Team:Gifu/Notebook

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Click on a date to see our research activities on that day.

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AugustSeptember
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August

August 11th

Restriction Enzyme Digestion

samplerestriction enzymes
His-RFP with stop codonSpeI,EcoRI
5'-intron MSpeI,EcoRI
Lac-3'intron-RBSSpeI,EcoRI
His-RFP without stop codonXbaI,EcoRI
RBS-AmpSpeI,EcoRI

Ligation

  • EcoRI-His-RFP(with stop codon)-SpeI + XbaI-DT-Cm-EcoRI
  • EcoRI-5'intron M-SpeI + XbaI-DT-Cm-EcoRI
  • EcoRI-Lac-3'intron-RBS-SpeI + XbaI-His-RFP(without stop codon)-5'intron-DT-Cm-EcoRI
  • EcoRI-His-RFP(without stop codon)-SpeI + SpeI-Amp-EcoRI

Transformation

  • His-RFP(with stop codon)-DT-Cm
  • 5'intron M-DT-Cm
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm
  • His-RFP(without stop codon)-Amp

Densitometry

sampleconcentration(ng/µL)
His-RFP(with stop codon) EcoRI-SpeI162.6
5'intron M EcoRI-SpeI45.4
Lac-3'intron-RBS EcoRI-SpeI120.9
His-RFP(without stop codon) EcoRI-SpeI160.0
His-RFP(without stop codon)-5'intron-DT-Cm XbaI-EcoRI 174.0
Amp EcoRI-SpeI101.8

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August 12th

Colony PCR

  • His-RFP(with stop codon)-DT-Cm
  • 5'intron M-DT-Cm
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[1]turning red
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[2]turning pink
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[3]turning white
  • His-RFP(without stop codon)-Amp

Electrophoresis

  1. His-RFP(with stop codon)-DT
  2. His-RFP
  3. 5'intron M-DT
  4. 5'intron M
  5. Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[1]
  6. Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[2]
  7. Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[3]
  8. His-RFP(without stop codon)-5'intron-DT
  9. His-RFP(without stop codon)

Liquid Culture

  • His-RFP(with stop codon)-DT
  • 5'intron M-DT
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[1]
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[3]
  • His-RFP(without stop codon)
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    August 13th

    Miniprep

    PCR

        By use of KAPA HiFi DNA Polymerase
    • His-RFP(with stop codon)-DT-Cm
    • 5'intron M-DT-Cm
      By use of Taq DNA Polymerase
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[1]turning red
  • Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[3]turning white

Electrophoresis

Restriction Enzyme Digestion

Ligation

Transformation

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August 16th

Liquid Culture

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August 18th

Miniprep

Colony PCR

Densitometry

Ligation

Transformation

Analysis of DNA sequences

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August 19th

Colony PCR

Electrophoresis

Shaking Culture

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August 20th

Colony PCR

Same as August 19th Colony PCR.

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August 21th

Reagent Preparation

Protein Extraction

SDS-PAGE

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August 22th

Prorein Purification by use of Ni-NTA

SDS-PAGE

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August 23th

Prorein Purification by use of Ni-NTA

SDS-PAGE

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August 24th

Extraction of plasmid device

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August 25th

Extraction of plasmid device

SDS-PAGE

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August 26th

PCR

Restriction Enzyme Digestion

Densitometry

Ligation

Transformation

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August 27th

Colony PCR

Shaking Culture

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August 28th

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