Team:SJTU-Software/Project/Tutorial

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Tutorial

“Easy BBK(An Easy Biobrick Blueprint’s pacKage)” has four main function: “search”, “compare”, “present”, and “upload”. This part will guide users about how to use this software tool.



2.2.1 How to start EASY BBK

Software environment: Java SE Development Kit 6 and later version.
1. Download EASY BBK from github
2. Download the latest JDK from http://www.oracle.com/technetwork/java/javase/downloads/index.html

3. Double click the Easybbk.jar and start Easybbk



2.2.2 Home Page

1/2. Click each icon to enter each function

2.2.3 Search

1. Go back to home page
2. Input keyword or sequence
3. Search by keyword
4. Search by sequence
5. Display advanced search conditions

1. Adjust the weight of the 4 properties to make them add up to 100
2. Click “Confirm” before starting search by keyword or sequence

1. Forward or Back to previous or next page
2. Display detail information of the biobrick
3. Click to view the main page of the biobrick on iGEM Registry
4. Check to add the biobrick to “compare”
5. Click to view the result most related to the biobrick on Google Scholar
6. Go to the previous page of search results
7. Go to the next page of search results
8. After biobricks being added from “search”, click to go to “compare” the biobricks

2.2.4 Compare

1. Remove the biobrick below from “Compare”
2. Click to view the main page of the biobrick on iGEM Registry
3. After biobricks being viewed in “compare”, click to go back to “search” results

2.2.5 Present

2.2.5.1 General introduction of Present Page

1. Basic Functions
2. Components on backbone
3. Proteins, plasmid, bacteriophage and chassis
4. Relation between biobricks
5. Backbone
6. Style settings of lines above
7. Bio-system drawing panel
8. Status bar

Basic Functions

1. Discard previous work and create a new bio-system
2. Open previously saved XML file
3. Save the drawn bio-system as an XML file to further edit next time
4. Export the picture of the bio-system as .jpg, .bmp or .png file.
5. Add text to the drawing panel
6. Change the font, size and color of the text
7. Delete components on drawing panel
8. Undo
9. Redo



Upload

Here, users could not only upload their self-created biobricks to our database, but also submit their form filled out in our software to the Registry to upload their self-created biobricks.



Compare

Multiple biobricks can be selected and compared. You can search and get multiple (up to three) biobricks, and compare them side by side.



SJTU-Software

Shanghai Jiao Tong University

800, Dongchuan Road

200240 Shanghai, China

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