Team:Freiburg/Content/Results/Vector
From 2014.igem.org
The Vector
Introduction
One important part in our system is the viral vector we use for transferring genes into target cells. We succeed to stably integrate our gene of interest into the genome of mammalian target cells by using a vector derived from the murine leukemia virus. The advantages of this vector are: its specificity for murine cells, making the viral work safe and easy; a very high efficiency for infection; and the ability of stable gene transfer into target genomes. Here we present results on these three qualities of our viral vector and how we optimized virus production and cell infection.
Stable integration of target genes into the genome
Our viral vector derives from the murine leukemia virus and since this virus is a retrovirus, it stably integrates our gene of interest into the target genomes. Hereby, any gene of interest can be delivered. So as to demonstrate this we transferred different genes for fluorescence proteins into murine cell lines.
In addition, we demonstrated the capability of stable gene integration by creating an EGFP cell line by infecting murine cells with our viral vector. Two days after virus infection, we selected for cells displaying green fluorescence by a cell sorter. Afterwards, we analyzed the EGFP cell line for several weeks by flow cytometry. Sustained expression of EGFP indicates stable integration into the genome of the original cell line.
For optimal integration of the target gene, it was tested how long the viral vector need for transducing murine cells. The results indicate that a high infection rate was already reached after incubating the cells for five hours with the viral particles.
In order to sort the cells stable integrated the gene of interest into the genome, the viral vector contains a marker like the gene for a fluorophore. We tested the expression rate of EGFP in pMIG constructs containing only the marker in comparison to constructs containing the stably transferred target gene in combination with the marker. In the construct combining the target gene with the marker, EGFP expression is apparently lower explainable by the lower binding capacity of the internal ribosomal entry site (IRES).
With our viral vector any gene of interest can be delivered thereby generating new stable cell lines. The advantages of generating cell lines with our vector are its efficiency and its specificity making handling easy and safe!
High efficiency
The vector we use transfers genes into target genomes. We increased the efficiency in cell targeting and gene transfer to reach an infection rate of over 80% in murine cell lines and high infection rates in other cell lines expressing the murine CAT-1 receptor.
Protocols for virus production and target cell transduction were optimized. As producer cell line for viral particles we took Phoenix cells containing plasmids with viral genes. Before transfection with the pMIG, we split Phoenix cells several times to increase viability and bring them into the exponential growth phase during production on the viral vector. In addition, supernatant containing the vector were harvest at distinct time points optimized for optimal viral titer. Target cells were infected by viral supernatant with Polybrene which increases the probability for particle to reach their target cells. Since murine leukemia viruses only infect dividing cells, the growth phase of the target cells were adjusted to the time point of infection.
Under these optimized conditions, the efficiency for infecting murine cell lines with our viral vector was over 80%. Since we had only 16% transduction efficiency at the beginning of the project, we would consider this a significant advance. To our knowledge, an optimized infection protocol with murine leukemia virus has not been published to date. The exact procedure can be found here (link).
Since, the viral titer plays an important role in the infection rate of target cells, we diluted and concentrated our viral vector. Concentration was reached by incubation the viral supernatant with Polybrene as well as with Chondroitin sulfat leading to formation of complexes. The complexes were big enough for pelleting by normal centrifugation. Pellets contained the viral particles and were resolved in a small volume of growth medium. Infecting murine cells with the concentrated vector lead to a higher infection rate compared to the unconcentrated virus or the diluted virus. However, infecting cells with a too highly concentrated virus would harms them and lead to cell death.