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Here we present Survey results and Modeling results (for Modeling results please scroll down the page)

Survey

14.10.2014
31 survey responses:

what survey answerers think that RNAi is

what they think that sh-miRs are

what they think that shRNAs are

what literature do they know about sh-miRs

what they find important in bioinformatic software

what they find important in sh-miR designer

how long will they wait for software response

survey answerers

their sex

and age

Modeling

We decided to pay more attention to model sh-miR molecules with different RNA 2D structure prediction software (we use RNAfold in our software). Here are our results:

analyzed sequence:
CTAAAGAAGGTATATTGCTGTTGACAGTGAGCGACTGUUUGUAUUCGCCCUAGCGCCTGTGAAGCCACAGATGGGGCGCUAUGGCGAAUACAAACATGCC
TACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCA
We always take first generated structure made with default options
If there is difference in algoruthm we always take RNA folding over DNA folding
mfold

RNAstructure

RNAfold

???

???

???

Team:AMU-Poznan/Modeling

From 2014.igem.org

Survey

Modeling