Team:Gifu/Notebook

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Calender

Click on a date to see our research activities on that day.

August
MonTueWedThrFriSat Sun
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September
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October
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Glossary

His
alphabet
GFP
Green Fluorescence Protein
RFP
Red Fluorescent Protein
This is BBa_E1010.
5'-intron
5'-intron M
3'-intron
Lac
LacI regulated promoter.
This is BBa_R0010.
Amp
Ampicillin resistance gene
Cm
Chloramphenicol resistance gene.
This is pSB1C3.
RBS
Ribosome Binding Sites.
This is BBa_B0034.
DT
Double Terminator consisting of BBa_B0010 and BBa_B0012.
This is BBa_B0015.
EcoRI
Restriction site that is cut by EcoRI or restriction enzyme
XbaI
Restriction site that is cut by XbaI or restriction enzyme
SpeI
Restriction site that is cut by SpeI or restriction enzyme
PstI
Restriction site that is cut by PstI or restriction enzyme
TTHA0715
Cold shock protein with amino acid sequence cut by thrombin
TTHA0715 guanidine deposition
SmtA
circular RNA

Prologue -before August-

Parts amplification with PCR

  1. Lac
  2. RBS
  3. RFP
  4. DT
  5. Cm (pSB1C3)
  6. pSB1A3
  7. pSB1K3

T4 phage Multiplication with E.coli

DNA Extraction from T4 phage

August

August 11th

Restriction Enzyme Digestion

samplerestriction enzymes
His-RFP(with stop codon)SpeI,EcoRI
5'-intron MSpeI,EcoRI
Lac-3'intron-RBSSpeI,EcoRI
His-RFP(without stop codon)XbaI,EcoRI
RBS-AmpSpeI,EcoRI

Ligation

  1. EcoRI-His-RFP(with stop codon)-SpeI + XbaI-DT-Cm-EcoRI
  2. EcoRI-5'intron M-SpeI + XbaI-DT-Cm-EcoRI
  3. EcoRI-Lac-3'intron-RBS-SpeI + XbaI-His-RFP(without stop codon)-5'intron-DT-Cm-EcoRI
  4. EcoRI-His-RFP(without stop codon)-SpeI + SpeI-Amp-EcoRI

Transformation

  1. -His-RFP(with stop codon)-DT-Cm-
  2. -5'intron M-DT-Cm-
  3. -Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm-
  4. -His-RFP(without stop codon)-Amp-

Densitometry

sampleconcentration(ng/µL)
His-RFP(with stop codon) EcoRI-SpeI162.6
5'intron M EcoRI-SpeI45.4
Lac-3'intron-RBS EcoRI-SpeI120.9
His-RFP(without stop codon) EcoRI-SpeI160.0
His-RFP(without stop codon)-5'intron-DT-Cm XbaI-EcoRI 174.0
Amp EcoRI-SpeI101.8