Finished the first draft of the model, will leave it until we have real data to feed back into the system. The model is very robust and allows any user to input a large variety of parameters and scenarios that could be realistically expected in the laboratory results. The output of the model is the colour that you can expect over time (the outputs of the real system will be from a combination of mCherry and GFP).

The way that I finally got the model to work was by returning to the ODE15s function in Matlab

Today was spent trying to get the

The morning was spent with Glen and Fran (who are working on part B) discussing exactly what network of activation and repression we were trying to categorize and turning it from Snapgene files (that the Biochemists understand) into a series of possible repression and activation scenarios. Then