Team:TU Delft-Leiden/Modeling/CodeRepository

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Code Repository

On this page, links to the Matlab scripts we made for our modeling efforts are given. Right clicking the link and choosing "Save link as..." allows you to save the code to your computer.

Landmine Module

Standard Activation

Cooperative Activation

Promoter Model Fitter

EET Module

Flux Balance Analysis

FBA Constructed Model

Comparison with and without EET

FBA

FBA Uptake without EET

Robustness Analysis EET

Robustness Analysis Uptake

FVA

Phase Plane Analysis FBA

Phase Plane Analysis FVA

EET Complex Assembly

EET Pathway Assembly

EET Pathway Assembly Solver

EET Pathway Assembly (Simple)

EET Pathway Assembly Solver (Simple)

EET Pathway Assembly Solver (Simple) for varying d-ALA concentration