Team:Aix-Marseille/Notebook serA
From 2014.igem.org
Notebook: SerA
Week 9 : 08/25/2014 ➡ 08/31/2014
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Clean-up of PCR product number 82 and 83 from 8-8-14 (50µL)
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SOE reaction (= overlap PCR):
Mix:
- PCR product 82= 3µL
- PCR product 83 = 3µL
- dNTP 10mM = 2µL
- Q5 buffer = 8µL
- Q5 polymerase = 0,5µL
- H2O qsp 40µL
Program:
- 98°C 2’
- 98°C 20”
- 45°C 25”
- 72°C 1’
- 72°C 10’
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PCR2: Second PCR round to amplification of serA from the SOE product (26-08-14) with primers 5 and 6, using the iGEM PCR protocol with Q5 polymerase. The temperature of annealing is 60°C
Result: the amplification of serA is good. Clean-up of serA (PCR2) and elution with 45µL of water.
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Digestion of pSB1A3 and pSB1C3 during 1h30 at 37°C. Then, inactivation of enzymes during 20’ at 80°C
Mix:
- 10µL of plasmid
- 1µL EcoRI
- 1µL PstI
- 5µL Buffer 2.1
- 33 µL H2O
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Digestion of the insert (serA) during 1h at 37°C. Then inactivation of enzymes during 20’ at 80°C
Mix:
- 20µL of serA
- 1µL EcoRI
- 1µL PstI
- 5µL Buffer 2.1
- 13 µL H2O
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NEB ligation:
- 2µL of digested plasmid
- 2µL of digested serA insert
- 2µL ligase buffer
- 1µL ligase (NEB)
- 13 µL H2O
Incubation overnight at 16°C
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Transformation of 90µL of DH5α super competent cells with 10µL of ligation (pSB1C3-SerA or pSB1A2-SerA). The selective medium is LB + Ampicillin (Ap) 100µg/mL or LB + Chloramphenicol (Cm) 30µg/mL
pSB1C3-SerA-1 seemed good. It was sent to sequencing. It’s OK