Team:Paris Saclay/Notebook/July/30
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==Lab Work== | ==Lab Work== | ||
+ | |||
+ | ===C - Lemon scent=== | ||
+ | |||
+ | ====PCR of BBa_K762100==== | ||
+ | ''by Sean'' | ||
+ | |||
+ | Oligonucleotides used: iPS66, iPS67 | ||
+ | |||
+ | Oligonucleotides were diluted twice from 100µM to 50µM. | ||
+ | |||
+ | '''Protocol''' | ||
+ | |||
+ | Add into a PCR tube the following: | ||
+ | |||
+ | {| class="wikitable centre" width="50%" | ||
+ | |+ | ||
+ | |- | ||
+ | ! scope=col | Component | ||
+ | ! scope=col | For a total volume of 50μl | ||
+ | |- | ||
+ | |H<sub>2</sub>O | ||
+ | |35.5μl | ||
+ | |- | ||
+ | | Phusion buffer 5X | ||
+ | | 10μl | ||
+ | |- | ||
+ | | dNTPs | ||
+ | | 1μl | ||
+ | |- | ||
+ | | iPS66 | ||
+ | | 1μl | ||
+ | |- | ||
+ | | iPS67 | ||
+ | | 1μl | ||
+ | |- | ||
+ | | BBa_K762100 | ||
+ | | 1μl | ||
+ | |- | ||
+ | | Phusion DNA polymerase | ||
+ | | 0.25μl | ||
+ | |} | ||
+ | |||
+ | Tube was placed in PCR machine with the following parameters. | ||
+ | |||
+ | {| class="wikitable centre" width="80%" | ||
+ | |+ | ||
+ | |- | ||
+ | ! scope=col | Cycle step | ||
+ | ! scope=col | Temperature | ||
+ | ! scope=col | Time | ||
+ | ! scope=col | Cycle | ||
+ | |- | ||
+ | | width="25%" | | ||
+ | Initial denaturation | ||
+ | | width="25%" | | ||
+ | 98°C | ||
+ | | width="25%" | | ||
+ | 1 min | ||
+ | | width="25%" | | ||
+ | 1 | ||
+ | |- | ||
+ | | Denaturation | ||
+ | | 98°C | ||
+ | | 15 s | ||
+ | | 25 - 30 | ||
+ | |- | ||
+ | | Annealing | ||
+ | | variable | ||
+ | | 55°C | ||
+ | | 25 - 30 | ||
+ | |- | ||
+ | | Extension | ||
+ | | 72°C | ||
+ | | 45 s | ||
+ | | 25-30 | ||
+ | |- | ||
+ | | Final extension | ||
+ | | 72°C | ||
+ | | 10 min | ||
+ | | 1 | ||
+ | |- | ||
+ | | Final extension | ||
+ | | 8°C | ||
+ | | hold | ||
+ | | 1 | ||
+ | |} |
Revision as of 14:48, 30 July 2014
Contents |
Wednesday 30th July
Lab Work
C - Lemon scent
PCR of BBa_K762100
by Sean
Oligonucleotides used: iPS66, iPS67
Oligonucleotides were diluted twice from 100µM to 50µM.
Protocol
Add into a PCR tube the following:
Component | For a total volume of 50μl |
---|---|
H2O | 35.5μl |
Phusion buffer 5X | 10μl |
dNTPs | 1μl |
iPS66 | 1μl |
iPS67 | 1μl |
BBa_K762100 | 1μl |
Phusion DNA polymerase | 0.25μl |
Tube was placed in PCR machine with the following parameters.
Cycle step | Temperature | Time | Cycle |
---|---|---|---|
Initial denaturation |
98°C |
1 min |
1 |
Denaturation | 98°C | 15 s | 25 - 30 |
Annealing | variable | 55°C | 25 - 30 |
Extension | 72°C | 45 s | 25-30 |
Final extension | 72°C | 10 min | 1 |
Final extension | 8°C | hold | 1 |