Team:BYU Provo/Project

From 2014.igem.org

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<h1>Project: Biofilm Annihilation</h1>
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<h3>Project Background: </h3>
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<p>Biofilm production by bacteria is a major concern in ASPs (activated sludge processors). The buildup of these bacteria in these processors inhibits the helpful bacteria from being able to effectively break down several components. Of main concern are the biofilms of bacteria such as Nocardia spp., Thiothrix spp., Sphaerotilus natans, and several others. In order to solve this issue we cloned the genes for alpha Amylase and DispersinB, both which break down the polysaccharide matrix of biofilms, as well as the gene for Aiia, a quorum-sensor blocker, into Nitrosospira multiformis, one of the helpful bacteria in the activated sludge processors. Attached to these genes in their respective chassis is a signaling sequence which dictates the expression of these gene products extracellularly. With the expression of these genes outside the cells there should be a significant decrease in the amount of biofilm buildup by these biofilm-creating bacteria and bacteria such as N. multiformis will be less restricted in breaking down the interested components of ASPs.
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<h3>Biofilm Team:</h3>
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<p>Cam Zenger, Jared McOmber, and Jordan Berg</p>
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<p>The focus of the biofilm team was to insert the genes for Alpha Amylase, DispersinB, and Aiia with a signaling sequence for extracellular expression into the pSB1C3 chassis and to assay the efficacy of these genes in biofilm reduction in ASPs. Additionally, site-directed mutagenesis was performed on alpha Amylase to remove the PstI restriction site found within the gene.</p>
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Revision as of 22:48, 28 July 2014



WELCOME TO iGEM 2014!

Your team has been approved and you are ready to start the iGEM season!
On this page you can document your project, introduce your team members, document your progress
and share your iGEM experience with the rest of the world!


Click here to edit this page!

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Project Description

Content

We are working to optimize the wastewater treatment process. Currently we are addressing some of the difficulties faced by the working microbial community in the bioreactor. These include: the buildup of biofilm, the destruction of the "working class" bacteria by phage, antibiotic discharge into the wastewater, and nitrate production. We will be building our machine in the bioreactor bacterium N.multiformis and optimizing it to address the aforementioned obstacles.


References

iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you though about your project and what works inspired you.

You can use these subtopics to further explain your project

  1. Overall project summary
  2. Project Details
  3. Materials and Methods
  4. The Experiments
  5. Results
  6. Data analysis
  7. Conclusions

It's important for teams to describe all the creativity that goes into an iGEM project, along with all the great ideas your team will come up with over the course of your work.

It's also important to clearly describe your achievements so that judges will know what you tried to do and where you succeeded. Please write your project page such that what you achieved is easy to distinguish from what you attempted.

Project: Biofilm Annihilation

Project Background:

Biofilm production by bacteria is a major concern in ASPs (activated sludge processors). The buildup of these bacteria in these processors inhibits the helpful bacteria from being able to effectively break down several components. Of main concern are the biofilms of bacteria such as Nocardia spp., Thiothrix spp., Sphaerotilus natans, and several others. In order to solve this issue we cloned the genes for alpha Amylase and DispersinB, both which break down the polysaccharide matrix of biofilms, as well as the gene for Aiia, a quorum-sensor blocker, into Nitrosospira multiformis, one of the helpful bacteria in the activated sludge processors. Attached to these genes in their respective chassis is a signaling sequence which dictates the expression of these gene products extracellularly. With the expression of these genes outside the cells there should be a significant decrease in the amount of biofilm buildup by these biofilm-creating bacteria and bacteria such as N. multiformis will be less restricted in breaking down the interested components of ASPs.

Biofilm Team:

Cam Zenger, Jared McOmber, and Jordan Berg

The focus of the biofilm team was to insert the genes for Alpha Amylase, DispersinB, and Aiia with a signaling sequence for extracellular expression into the pSB1C3 chassis and to assay the efficacy of these genes in biofilm reduction in ASPs. Additionally, site-directed mutagenesis was performed on alpha Amylase to remove the PstI restriction site found within the gene.





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