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Team:Cambridge-JIC/Informatics
From 2014.igem.org
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<li>identify and characterise promoters, in particular looking for strong, inducible, tissue-specific or early development stage promoters. | <li>identify and characterise promoters, in particular looking for strong, inducible, tissue-specific or early development stage promoters. | ||
</ul> | </ul> | ||
| + | </p> | ||
| + | |||
| + | <h3> Codon usage optimisation </h3> | ||
| + | <p> | ||
| + | Our start point was the Marchantia genome and the Open Reading Frame (ORF) predicted with the Geneious software (<a href = "http://www.geneious.com/">http://www.geneious.com/</a>). | ||
</p> | </p> | ||
Revision as of 18:06, 23 July 2014
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Informatics
To introduce a novel chassis and make full advantage of its properties, we want to computationally analyse its genome in order to:
- optimise codon usage in our registry parts and to facilitate future synthetic biology work on Marchantia;
- identify and characterise promoters, in particular looking for strong, inducible, tissue-specific or early development stage promoters.
Codon usage optimisation
Our start point was the Marchantia genome and the Open Reading Frame (ORF) predicted with the Geneious software (http://www.geneious.com/).
