Team:Yale/Results
From 2014.igem.org
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<li><strong>Strains, Plasmids, and Reagents:</strong> | <li><strong>Strains, Plasmids, and Reagents:</strong> | ||
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<p>A second promoter, P<sub>LtetO</sub>, which is induced by ATC, will express the taRNA capable of interacting with the crRNA and releasing the RBS for docking of the T7 RNA polymerase. This will expose the RBS and allow for translation of T7 RNA Polymerase. Once the T7 RNA Polymerase is expressed, it can then bind to the T7 Promoter and lead to the expression of the gene of interest, such as LL-37. The ribo-regulated T7 RNA Polymerase (formally known as α12c) and the TolC selection marker will be ultimately incorporated into a conjugative plasmid and into the genome of <i>E. coli</i> to control for copy number. In this way, the cell can better regulate protein expression. A second pZ plasmid will contain the gene of interest expressed by a T7 promoter. Finally, the third plasmid will contain the OTS. | <p>A second promoter, P<sub>LtetO</sub>, which is induced by ATC, will express the taRNA capable of interacting with the crRNA and releasing the RBS for docking of the T7 RNA polymerase. This will expose the RBS and allow for translation of T7 RNA Polymerase. Once the T7 RNA Polymerase is expressed, it can then bind to the T7 Promoter and lead to the expression of the gene of interest, such as LL-37. The ribo-regulated T7 RNA Polymerase (formally known as α12c) and the TolC selection marker will be ultimately incorporated into a conjugative plasmid and into the genome of <i>E. coli</i> to control for copy number. In this way, the cell can better regulate protein expression. A second pZ plasmid will contain the gene of interest expressed by a T7 promoter. Finally, the third plasmid will contain the OTS. | ||
<p>The benefit of this type of system is that it is robust and can be easily re-engineered, portable in the form of plasmids, compatible across multiple <i>E. coli</i> strains, and efficient in that it does not require the cell to expend more energy on the constitutive synthesis of another protein. We hypothesize that by utilizing these two levels of control, we will be able to reduce the expression of T7 RNA polymerase and produce a system with zero basal expression of the gene of interest.</p></ul> | <p>The benefit of this type of system is that it is robust and can be easily re-engineered, portable in the form of plasmids, compatible across multiple <i>E. coli</i> strains, and efficient in that it does not require the cell to expend more energy on the constitutive synthesis of another protein. We hypothesize that by utilizing these two levels of control, we will be able to reduce the expression of T7 RNA polymerase and produce a system with zero basal expression of the gene of interest.</p></ul> | ||
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+ | <h1>Adhesion Testing </h1> | ||
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+ | <ol type="I"><li><strong>T7 Riboregulation System: </strong><ul style="list-style-type:square"> | ||
- | + | <ul><li><strong>Mass Retention of MAPs Under Stress</strong> | |
<p>Preliminary proof of concept testing was conducted on a commercially available MAP-based product known as Cell-Tak <sup>TM</sup>. Cell-Tak<sup>TM</sup> is designed to facilitate cell adhesion to normally non-biocompatible surfaces such as microscope slides and petri dishes. We deposited ~20 µg films of Cell-Tak onto borosilicate substrates and proceeded to erode them under deionized H<sub>2</sub>O and 5% acetic acid. The results from this experiment are presented below and illustrate the design of our assay to test a variety of solvent and erosion conditions on MAP films. A balance that can read to uncertainties of 1 µg was used to determine the mass of protein remaining. An exponential decay curve was fitted to these experiments giving decay rates of 0.002 µg/pass and 0.046 µg/pass for deionized H<sub>2</sub>O and 5% acetic acid, respectively. As lower pH reverses the coordination of L-DOPA, it is expected that the acidic conditions engender the higher rate of decay. This experiment presents a preliminary result that validates our ability to apply erosion onto MAP-coated surfaces. We intend to apply a similar protocol to metal and plastic surfaces as well as erode surfaces under different pH conditions to provide a more comprehensive picture of the optimal conditions for mussel adhesion. | <p>Preliminary proof of concept testing was conducted on a commercially available MAP-based product known as Cell-Tak <sup>TM</sup>. Cell-Tak<sup>TM</sup> is designed to facilitate cell adhesion to normally non-biocompatible surfaces such as microscope slides and petri dishes. We deposited ~20 µg films of Cell-Tak onto borosilicate substrates and proceeded to erode them under deionized H<sub>2</sub>O and 5% acetic acid. The results from this experiment are presented below and illustrate the design of our assay to test a variety of solvent and erosion conditions on MAP films. A balance that can read to uncertainties of 1 µg was used to determine the mass of protein remaining. An exponential decay curve was fitted to these experiments giving decay rates of 0.002 µg/pass and 0.046 µg/pass for deionized H<sub>2</sub>O and 5% acetic acid, respectively. As lower pH reverses the coordination of L-DOPA, it is expected that the acidic conditions engender the higher rate of decay. This experiment presents a preliminary result that validates our ability to apply erosion onto MAP-coated surfaces. We intend to apply a similar protocol to metal and plastic surfaces as well as erode surfaces under different pH conditions to provide a more comprehensive picture of the optimal conditions for mussel adhesion. | ||
<center><img src="https://static.igem.org/mediawiki/2014/a/aa/Erosion_Fig_iGEMwiki.png" height = 300 width = auto></center> | <center><img src="https://static.igem.org/mediawiki/2014/a/aa/Erosion_Fig_iGEMwiki.png" height = 300 width = auto></center> |
Revision as of 02:27, 18 October 2014
Results |
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Experimental Design
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Adhesion Testing
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