Team:Freiburg/Content/Results/BioBrick

From 2014.igem.org

(Difference between revisions)
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<p>Here you can get an <a href="http://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=Freiburg">Overview</a> of our BioBricks. If you want to see more details especially for certain BioBricks, you can click on the BioBrick definition and explore the registry entries.
<p>Here you can get an <a href="http://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=Freiburg">Overview</a> of our BioBricks. If you want to see more details especially for certain BioBricks, you can click on the BioBrick definition and explore the registry entries.
<section>
<section>
-
<h4 id="Plasmid-BioBricks-mCAT-1"><a href="http://parts.igem.org/Part:BBa_K1470000">BBa_K1470000</a>: mCAT-1</h4>
+
<ul>
 +
<li><h4 id="Plasmid-BioBricks-mCAT-1"><a href="http://parts.igem.org/Part:BBa_K1470000">BBa_K1470000</a>: mCAT-1</h4>
<p>mCat-1 is the receptor we introduced to human cells to be able to infect them using the MuLV </p>
<p>mCat-1 is the receptor we introduced to human cells to be able to infect them using the MuLV </p>
</section>
</section>
<section>
<section>
-
<h4 id="Plasmid-BioBricks-PAC"><a href="http://parts.igem.org/Part:BBa_K1470001">BBa_K1470001</a>: Puromycin N-acetyl-transferase (PAC)</h4>
+
<li><h4 id="Plasmid-BioBricks-PAC"><a href="http://parts.igem.org/Part:BBa_K1470001">BBa_K1470001</a>: Puromycin N-acetyl-transferase (PAC)</h4>
<p>Puromycin N-acetyl-transferase is an enzyme which we used for selecting stable eucaryotic cell lines. Because of the blocked protein biosynthesis more than 99% of uninfected cells will be dead within two days. </p>
<p>Puromycin N-acetyl-transferase is an enzyme which we used for selecting stable eucaryotic cell lines. Because of the blocked protein biosynthesis more than 99% of uninfected cells will be dead within two days. </p>
</section>
</section>
<section>
<section>
-
<h4 id="Plasmid-BioBricks-Gal4BD"><a href="http://parts.igem.org/Part:BBa_K1470002">BBa_K1470002</a>: Galactose-induced gene 4 (Gal4BD)</h4>
+
<li><h4 id="Plasmid-BioBricks-Gal4BD"><a href="http://parts.igem.org/Part:BBa_K1470002">BBa_K1470002</a>: Galactose-induced gene 4 (Gal4BD)</h4>
<p>Galactose-induced gene 4 (Gal4BD) is used to investigate gene expression levels.</p>
<p>Galactose-induced gene 4 (Gal4BD) is used to investigate gene expression levels.</p>
</section>
</section>
<section>
<section>
-
<h4 id="Plasmid-BioBricks-WPRE"><a href="http://parts.igem.org/Part:BBa_K1470003">BBa_K1470003</a>: Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element (WPRE)</h4>
+
<li><h4 id="Plasmid-BioBricks-WPRE"><a href="http://parts.igem.org/Part:BBa_K1470003">BBa_K1470003</a>: Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element (WPRE)</h4>
<p>Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element (WPRE) is a regulatory RNA sequence, which promotes viral gene expression.</p>
<p>Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element (WPRE) is a regulatory RNA sequence, which promotes viral gene expression.</p>
</section>
</section>
<section>
<section>
-
<h4 id="Plasmid-BioBricks-SEAP"><a href="http://parts.igem.org/Part:BBa_K1470004">BBa_K1470004</a>: Secreted Alkaline Phosphatase (SEAP)</h4>
+
<li><h4 id="Plasmid-BioBricks-SEAP"><a href="http://parts.igem.org/Part:BBa_K1470004">BBa_K1470004</a>: Secreted Alkaline Phosphatase (SEAP)</h4>
<p>Secreted Alkaline Phosphatase (SEAP) is used in cell culture assays to quantify gene expression.</p>
<p>Secreted Alkaline Phosphatase (SEAP) is used in cell culture assays to quantify gene expression.</p>
</section>
</section>
<section>
<section>
-
<h4 id="Plasmid-BioBricks-ePDZ"><a href="http://parts.igem.org/Part:BBa_K1470005">BBa_K1470005</a>: engineered PDZ domain (ePDZ)</h4>
+
<li><h4 id="Plasmid-BioBricks-ePDZ"><a href="http://parts.igem.org/Part:BBa_K1470005">BBa_K1470005</a>: engineered PDZ domain (ePDZ)</h4>
<p>engineered PDZ domain (ePDZ) is an important part of the blue light system.</p>
<p>engineered PDZ domain (ePDZ) is an important part of the blue light system.</p>
</section>
</section>
<section>
<section>
-
<h4 id="Plasmid-BioBricks-pMIG"><a href="http://parts.igem.org/Part:BBa_K1470006">BBa_K1470006</a>: The Viral Vector (pMIG)</h4>
+
<li><h4 id="Plasmid-BioBricks-pMIG"><a href="http://parts.igem.org/Part:BBa_K1470006">BBa_K1470006</a>: The Viral Vector (pMIG)</h4>
<p>The Viral Vector (pMIG) is the plasmid which is used to tranfect Phoenix cells with the gene to be packed into viral particles. It contains two LTRs and a multiple cloning site. </p>
<p>The Viral Vector (pMIG) is the plasmid which is used to tranfect Phoenix cells with the gene to be packed into viral particles. It contains two LTRs and a multiple cloning site. </p>
</section>
</section>
<section>
<section>
-
<h4 id="Plasmid-BioBricks-Cas9-Nickase"><a href="http://parts.igem.org/Part:BBa_K1470007">BBa_K1470007</a>: Cas9-Nickase</h4>
+
<li><h4 id="Plasmid-BioBricks-Cas9-Nickase"><a href="http://parts.igem.org/Part:BBa_K1470007">BBa_K1470007</a>: Cas9-Nickase</h4>
<p>Cas9-Nickase is a Cas9 without iGEM restrction-sites but full catalytic activity.</p>
<p>Cas9-Nickase is a Cas9 without iGEM restrction-sites but full catalytic activity.</p>
</section>
</section>

Revision as of 00:53, 18 October 2014

The AcCELLerator

BioBricks

On this page, you will find our new designed BioBricks and also our plasmids used in the experiments.

Here you can get an Overview of our BioBricks. If you want to see more details especially for certain BioBricks, you can click on the BioBrick definition and explore the registry entries.

  • BBa_K1470000: mCAT-1

    mCat-1 is the receptor we introduced to human cells to be able to infect them using the MuLV

  • BBa_K1470001: Puromycin N-acetyl-transferase (PAC)

    Puromycin N-acetyl-transferase is an enzyme which we used for selecting stable eucaryotic cell lines. Because of the blocked protein biosynthesis more than 99% of uninfected cells will be dead within two days.

  • BBa_K1470002: Galactose-induced gene 4 (Gal4BD)

    Galactose-induced gene 4 (Gal4BD) is used to investigate gene expression levels.

  • BBa_K1470003: Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element (WPRE)

    Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element (WPRE) is a regulatory RNA sequence, which promotes viral gene expression.

  • BBa_K1470004: Secreted Alkaline Phosphatase (SEAP)

    Secreted Alkaline Phosphatase (SEAP) is used in cell culture assays to quantify gene expression.

  • BBa_K1470005: engineered PDZ domain (ePDZ)

    engineered PDZ domain (ePDZ) is an important part of the blue light system.

  • BBa_K1470006: The Viral Vector (pMIG)

    The Viral Vector (pMIG) is the plasmid which is used to tranfect Phoenix cells with the gene to be packed into viral particles. It contains two LTRs and a multiple cloning site.

  • BBa_K1470007: Cas9-Nickase

    Cas9-Nickase is a Cas9 without iGEM restrction-sites but full catalytic activity.

    • Plasmids

    mCat-1 Plasmids

    Constitutive Expression

    p14rz_003: pcDNA_SLC7A1_GFP

    • mCAT-1 fusion protein tagged with a C-terminal GFP (green fluorescent protein)
    • used for fluorescent imaging

    p14rz_004: pcDNA_SLC7A1_HA

    • mCAT-1 fusion protein tagged with a C-terminal HA (hemagglutinin)
    • used for Western Blot studies

    p14rz_005: pcDNA_SLC7A1_mCherry

    • mCAT-1 fusion protein tagged with a C-terminal mCherry fluorescent protein
    • used for fluorescent imaging

    p14rz_006: pcDNA_SLC7A1_HA_p2a_mCherry

    • mCAT-1 tagged with a C-terminal HA and mCherry
    • the HA and the mCherry are separated by a P2A sequence that results in 2 separate proteins, mCAT-1-HA and mCherry

    p14rz_007: pcDNA_SLC7A1_HA_mCherry

    • mCAT-1 tagged with a C-terminal HA and mCherry
    • the HA and the mCherry are linked by … resulting in a doubled tagged mCAT-1 fusion protein

    Red Light induced Gene Expression

    p14rz_010: TetO13_CMVmin_SLC7A1_HA_p2a_mCherry

    • inducible vector encoding mCAT-1 fusion protein under control of a modified Tet promoter (Ptet) harboring a spacer between the 13mer tetO operator and the minimal promoter (TetO13–CMVmin)
    • the HA and the mCherry are separated by a P2A sequence that results in 2 separate proteins, mCAT-1-HA and mCherry

    p14rz_011: TetO13_CMVmin_SLC7A1_HA_mCherry

    • inducible vector encoding mCAT-1 fusion protein under control of a modified Tet promoter (Ptet) harboring a spacer between the 13mer tetO operator and the minimal promoter (TetO13–CMVmin)
    • the HA and the mCherry are linked by … resulting in a doubled tagged mCAT-1 fusion protein

    Blue Light induced Gene Expression

    p14rz_008: Gal4_SLC7A1

    • inducible expression vector encoding mCAT-1 under control of a galactose-inducible promoter (Gal4UAS)
    • in the dark the expression of mCAT-1 gene is off
    • to induce expression of the mCAT-1 gene the … plasmid is/are needed

    p14rz_009: Gal4_SLC7A1_HA

    • inducible expression vector encoding the mCAT-1 fusion protein (tagged with a C-terminal HA) under control of a galactose-inducible promoter (Gal4UAS)
    • in the dark the expression of mCAT-1 gene is off
    • to induce expression of the mCAT-1 gene the … plasmid is/are needed

    Light System

    Blue Light

    p14ls_002: Gal4_mCherry

    • inducible expression vector encoding the reporter gene mCherry under control of a galactose-inducible promoter (Gal4UAS)
    • in the dark the expression of the reporter gene is off
    • to induce expression of mCherry the … plasmid is/are needed

    Viral Vector Plasmids

    image/svg+xml amp R pUC ori 3´LTR MCS psi_plus_pack 5´LTR PstI (1,463) NotI (1,435) EcoRI (1,426), 2 0 0 4 0 0 6 0 0 8 0 0 1 , 0 0 0 1 , 2 0 0 1 , 4 0 0 1 , 6 0 0 1 , 8 0 0 2 , 0 0 0 2 , 2 0 0 2 , 4 0 0 2 , 6 0 0 2 , 8 0 0 3 , 0 0 0 3 , 2 0 0 3 , 4 0 0 3 , 6 0 0 3 , 8 0 0 4 , 0 0 0 4 , 2 0 0 4 , 4 0 0 4 , 6 0 0 4 , 8 0 0 4 , 9 4 0 BBa_K1470006 (pMIG) 4,940 bp

    - retroviral expression vector with IRES-GFP cassette

    - the vector allows cloning of genes of interest within the iGEM cloning sites EcoRI-NotI-PstI

    Reporter Proteins???

    Foreign Plasmids

    Blue Light System

    pKM292

    • erstes
    • zweites
    • drittes

    pKM297

    • erstes
    • zweites
    • drittes

    Retrieved from "http://2014.igem.org/Team:Freiburg/Content/Results/BioBrick"