Team:Bordeaux/NotebookJune23

From 2014.igem.org

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<ul class="day-detail">
<ul class="day-detail">
<li>PCR of ELP-40 and ELP-60<br>
<li>PCR of ELP-40 and ELP-60<br>
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<div style="margin-left:95px ;"> => Dilution primer 100µM => 10µM<br>
+
<div style="margin-left:85px ;"> => Dilution primer 100µM => 10µM<br>
Primer forward: 1µl primer + 9µl H2O (Tm=58°C)<br>
Primer forward: 1µl primer + 9µl H2O (Tm=58°C)<br>
Primer reverse: 1µl primer + 9µl H2O (Tm=68°C)</div>
Primer reverse: 1µl primer + 9µl H2O (Tm=68°C)</div>
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Thermal cycler : <br>
Thermal cycler : <br>
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<div style="margin-left:25px ;">
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<div style="margin-left:55px ;">
3min 95°C<br>
3min 95°C<br>
30sec 95°C </div><br>
30sec 95°C </div><br>
25 cycles 30sec at all temperatures tested<br>
25 cycles 30sec at all temperatures tested<br>
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<div style="margin-left:25px ;">   
+
<div style="margin-left:55px ;">   
3sec 72°C<br>
3sec 72°C<br>
5min 72°C</div>
5min 72°C</div>

Revision as of 23:42, 17 October 2014

23rd June

Molecular biology

  • PCR of ELP-40 and ELP-60
    => Dilution primer 100µM => 10µM
    Primer forward: 1µl primer + 9µl H2O (Tm=58°C)
    Primer reverse: 1µl primer + 9µl H2O (Tm=68°C)

    Test of different hybridation temperature for PCR: 59°C 61°C 63°C 65°C 68°C

    Mix for 11 tubes
    H2O 357,5 µl
    Buffer 5X 110 µl
    Primer 27,5 µl
    dNTP 11µl

    Thermal cycler :
    3min 95°C
    30sec 95°C

    25 cycles 30sec at all temperatures tested
    3sec 72°C
    5min 72°C


  • Digestion cloning 1 (psB6A1) miniprep of 10/06/14 and VPGXG-20 (PCR of 10/06/14)
    Digestion plasmid Digestion insert
    H2O 7,5µl 7,5µl
    10X buffer 4 2µl 2µl
    XbaI 0,25µl 0,25µL
    EcoRI 0,25µl 0,25µl
    DNA 10µl 10µl

    With DNA = 6μl vector + 4μl H2O
    With DNA= 0.56μl Miniprep product + 9,44μl H2O


  • Digestion vector psB6A1 :
    Digestion plasmid
    H2O 7,5µl
    10X buffer 4 2µl
    XbaI 0,25µl
    EcoRI 0,25µl
    DNA 10µl

  • Digestion psB1C3 and PCR 40 and 60
    OD PCR tube 40= 282,5 ng/μl
    OD PCR tube 60= 366,3 ng/μl
    Tube 40 = 0,88 DNA +9,12µl H2O
    Tube 60 = 2,5 DNA + 7,5 µl H2O


  • Production
    We want to do a preculture test to have a better production.