"
Team:Paris Bettencourt/Bibliograpy
From 2014.igem.org
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Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae. </p> | Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae. </p> | ||
| - | <br><br><br><p class=text2 "margin-top:-40px;"><a href="http://www.ingentaconnect.com/content/iafp/jfp/2004/00000067/00000005/art00024">Cho, M. J., Buescher, R. W., Johnson, M., & Janes, M. (2004). Inactivation of pathogenic bacteria by cucumber volatiles (E, Z)-2, 6-nonadienal and (E)-2-nonenal. Journal of Food Protection®, 67(5), 1014-1016.</br></br> | + | <br><br><br><p class=text2 "margin-top:-40px;"><a target="blank" href="http://www.ingentaconnect.com/content/iafp/jfp/2004/00000067/00000005/art00024">Cho, M. J., Buescher, R. W., Johnson, M., & Janes, M. (2004). Inactivation of pathogenic bacteria by cucumber volatiles (E, Z)-2, 6-nonadienal and (E)-2-nonenal. Journal of Food Protection®, 67(5), 1014-1016.</br></br> |
| - | <a href="http://www.springer.com/food+science/book/978-3-540-69933-0">Grosch, W., and P. Schieberle. "Aroma Compounds." Food Chemistry. By H. D. Belitz. N.p.: Springer, 2009. 340-402. Print.</a> </p> | + | <a target="blank" href="http://www.springer.com/food+science/book/978-3-540-69933-0">Grosch, W., and P. Schieberle. "Aroma Compounds." Food Chemistry. By H. D. Belitz. N.p.: Springer, 2009. 340-402. Print.</a> </p> |
<h6 id="Teen">Teen spirit</h6> | <h6 id="Teen">Teen spirit</h6> | ||
| - | <p class=text1><a href="http://www.nature.com/jid/journal/v116/n4/full/5601027a.html">Haze, S., Gozu, Y., Nakamura, S., Kohno, Y., Sawano, K., Ohta, H., & Yamazaki, K. (2001). 2-Nonenal newly found in human body odor tends to increase with aging.<i> Journal of investigative dermatology</i>, 116(4), 520-524.</br></br> | + | <p class=text1><a target="blank" href="http://www.nature.com/jid/journal/v116/n4/full/5601027a.html">Haze, S., Gozu, Y., Nakamura, S., Kohno, Y., Sawano, K., Ohta, H., & Yamazaki, K. (2001). 2-Nonenal newly found in human body odor tends to increase with aging.<i> Journal of investigative dermatology</i>, 116(4), 520-524.</br></br> |
| - | <a href="http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0038110&representation=PDF">Mitro, S., Gordon, A. R., Olsson, M. J., & Lundström, J. N. (2012). The smell of age: perception and discrimination of body odors of different ages. PloS one, 7(5), e38110.</a> | + | <a target="blank" href="http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0038110&representation=PDF">Mitro, S., Gordon, A. R., Olsson, M. J., & Lundström, J. N. (2012). The smell of age: perception and discrimination of body odors of different ages. PloS one, 7(5), e38110.</a> |
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<br><br><br><p class=text2 "margin-top:-40px;"> | <br><br><br><p class=text2 "margin-top:-40px;"> | ||
| - | <a href="http://hmg.oxfordjournals.org/content/7/5/839.full.pdf+html">Treacy, E. P., Akerman, B. R., Chow, L. M. L., Youil, R., Bibeau, C., Lin, J., ... & Forrest, S. M. (1998). Mutations of the flavin-containing monooxygenase gene (FMO3) cause trimethylaminuria, a defect in detoxication. <i>Human molecular genetics</i>, 7(5), 839-845.</br></br> | + | <a target="blank" href="http://hmg.oxfordjournals.org/content/7/5/839.full.pdf+html">Treacy, E. P., Akerman, B. R., Chow, L. M. L., Youil, R., Bibeau, C., Lin, J., ... & Forrest, S. M. (1998). Mutations of the flavin-containing monooxygenase gene (FMO3) cause trimethylaminuria, a defect in detoxication. <i>Human molecular genetics</i>, 7(5), 839-845.</br></br> |
| - | <a href="http://ac.els-cdn.com/S0278691504001632/1-s2.0-S0278691504001632-main.pdf?_tid=55d68548-512e-11e4-840e-00000aab0f6c&acdnat=1413022197_3dd78b6d49e064bee1fb20887950b1d1">Kenyon, S., Carmichael, P. L., Khalaque, S., Panchal, S., Waring, R., Harris, R., ... & Mitchell, S. C. (2004). The passage of trimethylamine across rat and human skin.<i> Food and chemical toxicology</i>, 42(10), 1619-1628.</br></br> | + | <a target="blank" href="http://ac.els-cdn.com/S0278691504001632/1-s2.0-S0278691504001632-main.pdf?_tid=55d68548-512e-11e4-840e-00000aab0f6c&acdnat=1413022197_3dd78b6d49e064bee1fb20887950b1d1">Kenyon, S., Carmichael, P. L., Khalaque, S., Panchal, S., Waring, R., Harris, R., ... & Mitchell, S. C. (2004). The passage of trimethylamine across rat and human skin.<i> Food and chemical toxicology</i>, 42(10), 1619-1628.</br></br> |
| - | <a href="http://www.sciencedirect.com/science/article/pii/S0006291X03010878">Choi, H. S., Kim, J. K., Cho, E. H., Kim, Y. C., Kim, J. I., & Kim, S. W. (2003). A novel flavin-containing monooxygenase from<i> Methylophaga</i> sp. strain SK1 and its indigo synthesis in<i> Escherichia coli</i>. Biochemical and biophysical research communications, 306(4), 930-936.</br></br> | + | <a target="blank" href="http://www.sciencedirect.com/science/article/pii/S0006291X03010878">Choi, H. S., Kim, J. K., Cho, E. H., Kim, Y. C., Kim, J. I., & Kim, S. W. (2003). A novel flavin-containing monooxygenase from<i> Methylophaga</i> sp. strain SK1 and its indigo synthesis in<i> Escherichia coli</i>. Biochemical and biophysical research communications, 306(4), 930-936.</br></br> |
<a href="http://www.ncbi.nlm.nih.gov/pubmed/11259343">Mitchell, S. C., & Smith, R. L. (2001). Trimethylaminuria: the fish malodor syndrome. <i>Drug Metabolism and Disposition</i>, 29(4), 517-521.</br></br> | <a href="http://www.ncbi.nlm.nih.gov/pubmed/11259343">Mitchell, S. C., & Smith, R. L. (2001). Trimethylaminuria: the fish malodor syndrome. <i>Drug Metabolism and Disposition</i>, 29(4), 517-521.</br></br> | ||
| - | <a href="http://seva.cnb.csic.es/SEVA/Welcome.html">Standar European Vector Architecture, http://seva.cnb.csic.es/SEVA/Welcome.html, 2014</br></br> | + | <a target="blank" href="http://seva.cnb.csic.es/SEVA/Welcome.html">Standar European Vector Architecture, http://seva.cnb.csic.es/SEVA/Welcome.html, 2014</br></br> |
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<h6>Something fishy</h6> | <h6>Something fishy</h6> | ||
| - | <p class=text1><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3535645/pdf/pnas.201215689.pdf">Craciun, S., & Balskus, E. P. (2012). Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme.<i> Proceedings of the National Academy of Sciences</i>, 109(52), 21307-21312.</br></br> | + | <p class=text1><a target="blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3535645/pdf/pnas.201215689.pdf">Craciun, S., & Balskus, E. P. (2012). Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme.<i> Proceedings of the National Academy of Sciences</i>, 109(52), 21307-21312.</br></br> |
| - | <a href="http://www.jbc.org/content/237/4/1309.full.pdf">Baker, J. R., & Chaykin, S. (1962). The biosynthesis of trimethylamine-N-oxide. <i>J. biol. Chem</i>, 237, 1309-1313.</br></br> | + | <a target="blank" href="http://www.jbc.org/content/237/4/1309.full.pdf">Baker, J. R., & Chaykin, S. (1962). The biosynthesis of trimethylamine-N-oxide. <i>J. biol. Chem</i>, 237, 1309-1313.</br></br> |
| - | <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3052392/pdf/cbr_32_1_033.pdf">Richard J Mackay et al. (2011), Mackay, R. J., McEntyre, C. J., Henderson, C., Lever, M., & George, P. M. (2011). Trimethylaminuria: causes and diagnosis of a socially distressing condition. <i>The Clinical Biochemist Reviews</i>, 32(1), 33.</i></br></br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3052392/pdf/cbr_32_1_033.pdf">Richard J Mackay et al. (2011), Mackay, R. J., McEntyre, C. J., Henderson, C., Lever, M., & George, P. M. (2011). Trimethylaminuria: causes and diagnosis of a socially distressing condition. <i>The Clinical Biochemist Reviews</i>, 32(1), 33.</i></br></br> |
| - | <a href="http://www.pnas.org/content/108/43/17791.full.pdf+html">Chen, Y., Patel, N. A., Crombie, A., Scrivens, J. H., & Murrell, J. C. (2011). Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. <i>Proceedings of the National Academy of Sciences</i>, 108(43), 17791-17796.</br></br> | + | <a target="blank" href="http://www.pnas.org/content/108/43/17791.full.pdf+html">Chen, Y., Patel, N. A., Crombie, A., Scrivens, J. H., & Murrell, J. C. (2011). Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. <i>Proceedings of the National Academy of Sciences</i>, 108(43), 17791-17796.</br></br> |
| - | <a href="http://www.nature.com/clpt/journal/v42/n5/pdf/clpt1987201a.pdf">Al-Waiz, M., Ayesh, R., Mitchell, S. C., Idle, J. R., & Smith, R. L. (1987). A genetic polymorphism of the N-oxidation of trimethylamine in humans.<i> Clinical Pharmacology & Therapeutics</i>, 42(5), 588-594.</a></p> | + | <a target="blank" href="http://www.nature.com/clpt/journal/v42/n5/pdf/clpt1987201a.pdf">Al-Waiz, M., Ayesh, R., Mitchell, S. C., Idle, J. R., & Smith, R. L. (1987). A genetic polymorphism of the N-oxidation of trimethylamine in humans.<i> Clinical Pharmacology & Therapeutics</i>, 42(5), 588-594.</a></p> |
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<h6>Goody two shoes</h6> | <h6>Goody two shoes</h6> | ||
<p class=text1> | <p class=text1> | ||
| - | <a href="http://www.nrcresearchpress.com/doi/abs/10.1139/w05-130">Ara K, Hama M, Akiba S, Koike K, Okisaka K, Hagura T, Kamiya T, Tomita F. (2005). Foot odor due to microbial metabolism and its control. <i>Canadian Journal of Microbiology </i>52(4): 357-364, 10.1139/w05-130 </br></br> | + | <a target="blank" href="http://www.nrcresearchpress.com/doi/abs/10.1139/w05-130">Ara K, Hama M, Akiba S, Koike K, Okisaka K, Hagura T, Kamiya T, Tomita F. (2005). Foot odor due to microbial metabolism and its control. <i>Canadian Journal of Microbiology </i>52(4): 357-364, 10.1139/w05-130 </br></br> |
| - | <a href="http://www.sciencedirect.com/science/article/pii/S0167701214001262">Chris Callewaert, Benjamin Buysschaert, Els Vossen, Veerle Fievez, Tom Van de Wiele, Nico Boon. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. <i>Journal of Microbiological Methods</i> | + | <a target="blank" href="http://www.sciencedirect.com/science/article/pii/S0167701214001262">Chris Callewaert, Benjamin Buysschaert, Els Vossen, Veerle Fievez, Tom Van de Wiele, Nico Boon. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. <i>Journal of Microbiological Methods</i> |
Volume 103, 6–8 </br></br> | Volume 103, 6–8 </br></br> | ||
| - | <a href="http://www.ncbi.nlm.nih.gov/pubmed/12682299">Kobayashi K, Ehrlich SD, Albertini A. (2003). Essential Bacillus subtilis genes. <i>Proceeding of National Academy of Science U S A</i> vol. 100 no. 8 > 4678–4683, doi: 10.1073/pnas.0730515100 </br></br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/12682299">Kobayashi K, Ehrlich SD, Albertini A. (2003). Essential Bacillus subtilis genes. <i>Proceeding of National Academy of Science U S A</i> vol. 100 no. 8 > 4678–4683, doi: 10.1073/pnas.0730515100 </br></br> |
| - | <a href="http://www.ncbi.nlm.nih.gov/pubmed/20599493">Christopher J. Harvey, Ryan F. LeBouf, Aleksandr B. Stefaniak. (2010). Formulation and stability of a novel artificial human sweat under conditions of storage and use.<i>Toxicol In Vitro</i> 24(6):1790-6. doi: 10.1016/j.tiv.2010.06.016 </br></br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/20599493">Christopher J. Harvey, Ryan F. LeBouf, Aleksandr B. Stefaniak. (2010). Formulation and stability of a novel artificial human sweat under conditions of storage and use.<i>Toxicol In Vitro</i> 24(6):1790-6. doi: 10.1016/j.tiv.2010.06.016 </br></br> |
| - | <a href="http://www.ncbi.nlm.nih.gov/pubmed/9384377">Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessières P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A.(1997). The complete genome sequence of the gram-positive bacterium Bacillus subtilis. <i>Nature</i> 20;390(6657):249-56</a> </br></br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/9384377">Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessières P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A.(1997). The complete genome sequence of the gram-positive bacterium Bacillus subtilis. <i>Nature</i> 20;390(6657):249-56</a> </br></br> |
</br></br> | </br></br> | ||
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<h6>Don't sweat it</h6> | <h6>Don't sweat it</h6> | ||
<p class=text1> | <p class=text1> | ||
| - | <a href=" http://www.ncbi.nlm.nih.gov/pubmed/12468539">Natsch A, Gfeller H, Gygax P, Schmid J, Acuna G. A specific bacterial aminoacylase cleaves odorant precursors secreted in the human axilla. J Biol Chem. 2003 Feb 21;278(8):5718-27. Epub 2002 Dec 4. PubMed PMID: 12468539.</a></br></br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/12468539">Natsch A, Gfeller H, Gygax P, Schmid J, Acuna G. A specific bacterial aminoacylase cleaves odorant precursors secreted in the human axilla. J Biol Chem. 2003 Feb 21;278(8):5718-27. Epub 2002 Dec 4. PubMed PMID: 12468539.</a></br></br> |
| - | <a href=" http://www.ncbi.nlm.nih.gov/pubmed/7288207">Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668</a></br></br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/7288207">Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668</a></br></br> |
| - | <a href=" http://www.ncbi.nlm.nih.gov/pubmed/12468539">Leyden JJ, McGinley KJ, Hölzle E, Labows JN, Kligman AM. The microbiology of the human axilla and its relationship to axillary odor. J Invest Dermatol. 1981 Nov;77(5):413-6. PubMed PMID: 7288207.</a></br></br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/12468539">Leyden JJ, McGinley KJ, Hölzle E, Labows JN, Kligman AM. The microbiology of the human axilla and its relationship to axillary odor. J Invest Dermatol. 1981 Nov;77(5):413-6. PubMed PMID: 7288207.</a></br></br> |
Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae. </p> | Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae. </p> | ||
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<br><br><br><br> | <br><br><br><br> | ||
<p class=text2> | <p class=text2> | ||
| - | <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3346182/" >Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 2012. </a><br><br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3346182/" >Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 2012. </a><br><br> |
| - | <a href="http://www.sbg.bio.ic.ac.uk/~phyre2/html/nprot.2009.2.pdf" >Kelley LA and Sternberg MJE. Protein structure prediction on the web: a case study using the Phyre server. Nature Protocols 4, 363 - 371 (2009). </a> <br><br> | + | <a target="blank" href="http://www.sbg.bio.ic.ac.uk/~phyre2/html/nprot.2009.2.pdf" >Kelley LA and Sternberg MJE. Protein structure prediction on the web: a case study using the Phyre server. Nature Protocols 4, 363 - 371 (2009). </a> <br><br> |
| - | <a href="http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1923.html" >Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012, 9:357-359.</a> <br><br> | + | <a target="blank" href="http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1923.html" >Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012, 9:357-359.</a> <br><br> |
</p> | </p> | ||
<h6>Bioinformatics</h6> | <h6>Bioinformatics</h6> | ||
<p class=text1> | <p class=text1> | ||
| - | <a href="http://www.ncbi.nlm.nih.gov/pubmed/22719234" >Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. "Metabolic reconstruction for metagenomic data and its application to the human microbiome." PLoS Comput Biol. 2012 Jun;8(6):e1002358</a> <br><br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/22719234" >Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. "Metabolic reconstruction for metagenomic data and its application to the human microbiome." PLoS Comput Biol. 2012 Jun;8(6):e1002358</a> <br><br> |
| - | <a href="http://consurf.tau.ac.il/ConSurf_2013_reprint.pdf" >Celniker G., Nimrod G., Ashkenazy H., Glaser F., Martz E., Mayrose I., Pupko T., and Ben-Tal N. 2013. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function Isr. J. Chem. 2013 March 10, doi: 10.1002/ijch.201200096</a> <br><br> | + | <a target="blank" href="http://consurf.tau.ac.il/ConSurf_2013_reprint.pdf" >Celniker G., Nimrod G., Ashkenazy H., Glaser F., Martz E., Mayrose I., Pupko T., and Ben-Tal N. 2013. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function Isr. J. Chem. 2013 March 10, doi: 10.1002/ijch.201200096</a> <br><br> |
| - | <a href="http://www.ncbi.nlm.nih.gov/pubmed/23566668" >Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668. </a> <br><br> | + | <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/23566668" >Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668. </a> <br><br> |
</p> | </p> | ||
Revision as of 23:04, 17 October 2014
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Smell The Roses
Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae.
Cho, M. J., Buescher, R. W., Johnson, M., & Janes, M. (2004). Inactivation of pathogenic bacteria by cucumber volatiles (E, Z)-2, 6-nonadienal and (E)-2-nonenal. Journal of Food Protection®, 67(5), 1014-1016. Grosch, W., and P. Schieberle. "Aroma Compounds." Food Chemistry. By H. D. Belitz. N.p.: Springer, 2009. 340-402. Print.
Teen spirit
Haze, S., Gozu, Y., Nakamura, S., Kohno, Y., Sawano, K., Ohta, H., & Yamazaki, K. (2001). 2-Nonenal newly found in human body odor tends to increase with aging. Journal of investigative dermatology, 116(4), 520-524. Mitro, S., Gordon, A. R., Olsson, M. J., & Lundström, J. N. (2012). The smell of age: perception and discrimination of body odors of different ages. PloS one, 7(5), e38110.
Treacy, E. P., Akerman, B. R., Chow, L. M. L., Youil, R., Bibeau, C., Lin, J., ... & Forrest, S. M. (1998). Mutations of the flavin-containing monooxygenase gene (FMO3) cause trimethylaminuria, a defect in detoxication. Human molecular genetics, 7(5), 839-845. Kenyon, S., Carmichael, P. L., Khalaque, S., Panchal, S., Waring, R., Harris, R., ... & Mitchell, S. C. (2004). The passage of trimethylamine across rat and human skin. Food and chemical toxicology, 42(10), 1619-1628. Choi, H. S., Kim, J. K., Cho, E. H., Kim, Y. C., Kim, J. I., & Kim, S. W. (2003). A novel flavin-containing monooxygenase from Methylophaga sp. strain SK1 and its indigo synthesis in Escherichia coli. Biochemical and biophysical research communications, 306(4), 930-936. Mitchell, S. C., & Smith, R. L. (2001). Trimethylaminuria: the fish malodor syndrome. Drug Metabolism and Disposition, 29(4), 517-521. Standar European Vector Architecture, http://seva.cnb.csic.es/SEVA/Welcome.html, 2014
Something fishy
Craciun, S., & Balskus, E. P. (2012). Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme. Proceedings of the National Academy of Sciences, 109(52), 21307-21312. Baker, J. R., & Chaykin, S. (1962). The biosynthesis of trimethylamine-N-oxide. J. biol. Chem, 237, 1309-1313. Richard J Mackay et al. (2011), Mackay, R. J., McEntyre, C. J., Henderson, C., Lever, M., & George, P. M. (2011). Trimethylaminuria: causes and diagnosis of a socially distressing condition. The Clinical Biochemist Reviews, 32(1), 33. Chen, Y., Patel, N. A., Crombie, A., Scrivens, J. H., & Murrell, J. C. (2011). Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, 108(43), 17791-17796. Al-Waiz, M., Ayesh, R., Mitchell, S. C., Idle, J. R., & Smith, R. L. (1987). A genetic polymorphism of the N-oxidation of trimethylamine in humans. Clinical Pharmacology & Therapeutics, 42(5), 588-594.
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Goody two shoes
Ara K, Hama M, Akiba S, Koike K, Okisaka K, Hagura T, Kamiya T, Tomita F. (2005). Foot odor due to microbial metabolism and its control. Canadian Journal of Microbiology 52(4): 357-364, 10.1139/w05-130
Chris Callewaert, Benjamin Buysschaert, Els Vossen, Veerle Fievez, Tom Van de Wiele, Nico Boon. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. Journal of Microbiological Methods
Volume 103, 6–8
Kobayashi K, Ehrlich SD, Albertini A. (2003). Essential Bacillus subtilis genes. Proceeding of National Academy of Science U S A vol. 100 no. 8 > 4678–4683, doi: 10.1073/pnas.0730515100
Christopher J. Harvey, Ryan F. LeBouf, Aleksandr B. Stefaniak. (2010). Formulation and stability of a novel artificial human sweat under conditions of storage and use.Toxicol In Vitro 24(6):1790-6. doi: 10.1016/j.tiv.2010.06.016
Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessières P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A.(1997). The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 20;390(6657):249-56
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Don't sweat it
Natsch A, Gfeller H, Gygax P, Schmid J, Acuna G. A specific bacterial aminoacylase cleaves odorant precursors secreted in the human axilla. J Biol Chem. 2003 Feb 21;278(8):5718-27. Epub 2002 Dec 4. PubMed PMID: 12468539. Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668 Leyden JJ, McGinley KJ, Hölzle E, Labows JN, Kligman AM. The microbiology of the human axilla and its relationship to axillary odor. J Invest Dermatol. 1981 Nov;77(5):413-6. PubMed PMID: 7288207. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque vitae.
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Design practice
Jaquet, C (2010). Philosophie de l'odorat. PUF. Corbin, A (2008). Le miasme et la jonquille : L'odorat et l'imaginaire social aux XVIIIe et XIXe siècles. Champs Histoire. Flammarion. Classen, C (1994). The Cultural History of Smell. Routledge. Chaumier Serge (2003). L'Odeur du baiser, in A Fleur de peau. Payot
Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 2012.
Kelley LA and Sternberg MJE. Protein structure prediction on the web: a case study using the Phyre server. Nature Protocols 4, 363 - 371 (2009).
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012, 9:357-359.
Bioinformatics
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. "Metabolic reconstruction for metagenomic data and its application to the human microbiome." PLoS Comput Biol. 2012 Jun;8(6):e1002358
Celniker G., Nimrod G., Ashkenazy H., Glaser F., Martz E., Mayrose I., Pupko T., and Ben-Tal N. 2013. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function Isr. J. Chem. 2013 March 10, doi: 10.1002/ijch.201200096
Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668.
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