Team:Aberdeen Scotland/Parts/ 0000
From 2014.igem.org
(Difference between revisions)
(Created page with "<html> <head> <!-- Charset --> <meta charset="UTF-8"> <title>Team:Aberdeen Scotland/Parts - 2014.ogem.org</title> <!-- JavaScript --> <script src="https://2014.igem.org/T...") |
I.stansfield (Talk | contribs) |
||
Line 70: | Line 70: | ||
<!-- SECTION HEAD --> | <!-- SECTION HEAD --> | ||
<div class="t_overview"> | <div class="t_overview"> | ||
- | + | ||
- | + | ||
</div> <br class="clear"> <!-- END OF HEAD --> | </div> <br class="clear"> <!-- END OF HEAD --> | ||
<!-- PAGE CONTENT --> | <!-- PAGE CONTENT --> | ||
<div class="main_content"> | <div class="main_content"> | ||
- | < | + | |
- | + | ||
- | + | <h1>Our characterisation of existing BioBrick T9002: </h1> | |
- | + | <h1>GFP Producer Controlled by 3OC6HSL Receiver Device</h1> | |
- | + | <br> | |
- | + | <h3>Aims and Rationale</h3> | |
- | + | ||
+ | BioBrick BBa_T9002 on a pSB1C3 backbone is a composite part encoding a quorum sensing (QS) receiver driving expression of green fluorescent protein. T9002 was previously reported to exhibit increased GFP expression in the presence of AHL (N-acyl homoserine lactone). | ||
+ | <br> | ||
+ | <br> | ||
+ | We aimed to confirm GFP-expression responsiveness and dependence of AHL, and how the physical proximity of this QS receiver to any QS sender (producer of homoserine lactone) is facilitated by surface-binding affects quorum signalling. | ||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | <h3>Materials and Methods</h3> | ||
+ | |||
+ | T9002 <i>E. coli</i> transformants were grown in conjunction with other <i>E. coli</i> transformed with the AHL ‘Sender’ plasmid BBa_K1090000. BBa_K1090000 codes for AHL-synthesising enzymes, and also constitutively expresses RFP. | ||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | <b><i>Poly-L-lysine Cell Adhesion</i></b> | ||
+ | <br> | ||
+ | To investigate QS signalling, and how it is affected by binding of sender and receiver bacteria to a solid surface, we immobilised our cells on a surface coated with poly-lysine: | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | 1. 50μl 0.01% Poly-Lysine was added to each well of a 96 well glass-bottom Plate (Whatman), and incubated at room temperature for 2 hours | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | 2. Excess poly-lysine was removed and the plate washed three times with sterile water and allowed to dry at room temperature. | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | 3. <i>E. coli</i> cultures were grown overnight in a 37C shaking water bath, and diluted to an optical density-600nm(OD600) of 0.02. | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | 4. K1090000 ‘Sender’ transformants washed by centrifugation at 13000rpm for 1minute and resuspension in phosphate buffered saline (PBS), three times. | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | 5. Dual Sender-Receiver wells were diluted and combined in a colorimetric ratio to achieve a total OD600 of 0.02, with a range of 1:1 to 1:10,000,000 Sender:Receiver. 50μl total volume in Liquid Broth (LB) used per well. Incubated at 4C for 1 hour. | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | 6. Unbound cells removed by lightly shaking over waste and washed three times with Phosphate-Buffered Saline (PBS). 50μl fresh LB medium was added to each well. | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | 7. A FluoSTAR OPTIMA Fluoresence Plate Reader was used to measure Red(Excitation 544nm/Emission 612nm) and Green(Excitation 485nm/Emission 520nm) Fluorescence was recorded every 5 minutes for 7 hours; this incubates the samples at 37 degrees C and shakes (1mm double-orbital) for 30 seconds before each read. | ||
+ | |||
+ | <br><br> | ||
+ | <h3>Results</h3> | ||
+ | |||
+ | <b><i>K1090000 RFP expression</b></i> RFP expression of K1090000 transformed <i>E. coli</i> was compared against untransformed XL1-Blue <i>E. coli</i> negative control and an RFP pSB1C3 plasmid positive control. Analysis of red fluorescence using a fluorimeter plate reader clearly shows that K1090000 constitutively expressed moderate amounts of RFP (Figure 1). | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
<!-- PAGINATION --> | <!-- PAGINATION --> |
Revision as of 23:02, 17 October 2014
Our characterisation of existing BioBrick T9002:
GFP Producer Controlled by 3OC6HSL Receiver Device
Aims and Rationale
BioBrick BBa_T9002 on a pSB1C3 backbone is a composite part encoding a quorum sensing (QS) receiver driving expression of green fluorescent protein. T9002 was previously reported to exhibit increased GFP expression in the presence of AHL (N-acyl homoserine lactone).We aimed to confirm GFP-expression responsiveness and dependence of AHL, and how the physical proximity of this QS receiver to any QS sender (producer of homoserine lactone) is facilitated by surface-binding affects quorum signalling.
Materials and Methods
T9002 E. coli transformants were grown in conjunction with other E. coli transformed with the AHL ‘Sender’ plasmid BBa_K1090000. BBa_K1090000 codes for AHL-synthesising enzymes, and also constitutively expresses RFP.Poly-L-lysine Cell Adhesion
To investigate QS signalling, and how it is affected by binding of sender and receiver bacteria to a solid surface, we immobilised our cells on a surface coated with poly-lysine:
1. 50μl 0.01% Poly-Lysine was added to each well of a 96 well glass-bottom Plate (Whatman), and incubated at room temperature for 2 hours
2. Excess poly-lysine was removed and the plate washed three times with sterile water and allowed to dry at room temperature.
3. E. coli cultures were grown overnight in a 37C shaking water bath, and diluted to an optical density-600nm(OD600) of 0.02.
4. K1090000 ‘Sender’ transformants washed by centrifugation at 13000rpm for 1minute and resuspension in phosphate buffered saline (PBS), three times.
5. Dual Sender-Receiver wells were diluted and combined in a colorimetric ratio to achieve a total OD600 of 0.02, with a range of 1:1 to 1:10,000,000 Sender:Receiver. 50μl total volume in Liquid Broth (LB) used per well. Incubated at 4C for 1 hour.
6. Unbound cells removed by lightly shaking over waste and washed three times with Phosphate-Buffered Saline (PBS). 50μl fresh LB medium was added to each well.
7. A FluoSTAR OPTIMA Fluoresence Plate Reader was used to measure Red(Excitation 544nm/Emission 612nm) and Green(Excitation 485nm/Emission 520nm) Fluorescence was recorded every 5 minutes for 7 hours; this incubates the samples at 37 degrees C and shakes (1mm double-orbital) for 30 seconds before each read.