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Team:SYSU-Software/Tutorial
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Latest revision as of 21:25, 17 October 2014
Tutorial
FLAME (Framework-based Layout And Metacircuit design Engine) is an innovative kind of genetic circuit designer which combines an easy-to-use designation, different types of result viewing, succinct and effective math models and algorithms and wetlab experiment advises. It provides a brand new vision of genetic circuit designation.
The tutorial includes
I. Getting Started
A. Input Section
B. Output Section
C. Relationship Section (a. LOGIC GATE/b. TRUTH TABLE)
D. Others
II. Viewing Results
III. Simulating for Graph
IV. Experiment Advises
I. Getting Started
Create a genetic circuit base on your imagination
A. Input Section
1 Click the 
Button and Open the Material Box
2 Choose Input List
2.1 Click the Icon of the Inputs to Choose Your Input
2.2 Click the Icon of the Promoter to Choose the Pairing Promoter. You can also Search for Any Promoter that You Want.
2.3 Click the Icon of the Receptor to Choose the Pairing Receptor. You can also Search for Any Receptor that You Want.
2.4 Get Your Group of Material and Drag Them to the Canvas
B. Output Section
3 Choose Output List and Drag Your Ideal Output to the Canvas
C. Relationship Section (LOGIC GATE/TRUTH TABLE)
There Are 2 Ways to Choose the Relationship between Inputs and Outputs
a. Logic Gate
4 Choose the Design Frame List, Find Your Logic Relationship and Drag Your Ideal Output to the Canvas
b. Truth Table
5 Click 
Button if You Want to Connect Relationship by Truth Table
6 Configure the Truth Table as You Want
6a Click “+” or “-” to Manage the Number of Lines of the Truth Table
6b Use Sliders to Represent “Low” or “High”
6c Click Submit and Wait for a Recommendation of Logic Gate
7 Choose a Logic Gate
D. Others
8 Click the "+" Button to Add another Circuit
9 Click 
Button to Finish the Designation
II. Viewing Results
10 Switching Freely between Different Types of View
11 Using Scroll Bar 
to Zoom In or Zoom Out
III. Simulating for Graph
12 Click the Little Magnifier for More Detail and Click on the Blank to Switch between Dynamic Performance and Static Performance
13 Use Sliders to Make Adjustments
13a 
Adjust Concentration in Static Graph
13b 
Adjust Time Interval in Dynamic Graph
14 
Adjust the Type of RBS
15 Click on 
the Button to Switch to Another Circuit
IV. Experiment Advises
16 Click on the Button to Get Experiment Advises Step by Step
17 Click 
to Navigate through the Whole Software.
Email: sysusoftware@126.com
Address: 135# Xingang Rd(W.), Sun Yat-sen University, Guangzhou, China
