Team:Groningen/Template/MODULE/Notebook/secretion/week9

From 2014.igem.org

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September 22 - September 28
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September 29 - October 5
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<b>goal:</b> obtain the anti <i>Pseudomonas aeruginosa</i> system
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<b>goal:</b> Obtaining pLASs with 3-a assembly
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This week tried everything to assembly this system with the help of Gibson assembly. Every try failed miserably and at the end of the week it was decided to assemble this system with 3-A assembly
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Extra amounts of <i>dspB</i>, <i>dspB+HIS</i>, <i>aiiA</i>, <i>aiiA+HIS</i>,<i>aiiA+HIS</i>, <i>pLAS</i>, RBS, double terminator, pSB2k3, pSB1C3 and pSB1A3 were miniprepped to be used for the assembly
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1 ug of <i>aiiA</i>, <i>dspB</i>, <i>dspB+HIS</i> and <i>aiiA+HIS</i> with XbaI and PstI and 1 ug of RBS was cut with EcoRI and SpeI
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These were eventually ligated for 3 hours into pSB2K3 and transformed into <i>E. coli</i> NEB cells:
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<th>Name assembly</th><th>Upstream part</th><th>Downstream part</th><th>Backbone</th>
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<td>A1’</td><td>RBS</td><td><i>aiiA</i></td><td>pSB2K3</td>
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<td>A2’</td><td>RBS</td><td><i>dspB</i></td><td>pSB2K3</td>
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<td>A3’</td><td>RBS</td><td><i>dspB+HIS</i></td><td>pSB2K3</td>
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<td>A4’</td><td>RBS</td><td><i>aiiA+HIS</i></td><td>pSB2K3</td>
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Revision as of 20:48, 17 October 2014

September 29 - October 5
 
goal: Obtaining pLASs with 3-a assembly
 
Extra amounts of dspB, dspB+HIS, aiiA, aiiA+HIS,aiiA+HIS, pLAS, RBS, double terminator, pSB2k3, pSB1C3 and pSB1A3 were miniprepped to be used for the assembly
 
1 ug of aiiA, dspB, dspB+HIS and aiiA+HIS with XbaI and PstI and 1 ug of RBS was cut with EcoRI and SpeI
 
These were eventually ligated for 3 hours into pSB2K3 and transformed into E. coli NEB cells:
 
Name assemblyUpstream partDownstream partBackbone
A1’RBSaiiApSB2K3
A2’RBSdspBpSB2K3
A3’RBSdspB+HISpSB2K3
A4’RBSaiiA+HISpSB2K3