Team:UC-Santa Cruz-BioE/Notebook
From 2014.igem.org
(Difference between revisions)
Line 339: | Line 339: | ||
</div> | </div> | ||
<div class="edges";> | <div class="edges";> | ||
- | < | + | <div class="opa";> |
- | <li>Inoculated TSB with MR-1 (either from plate or glycerol stock) and grow overnight.</li> | + | <ul> |
- | <li>add glycerol to culture to final concentration of 80% glycerol.</li> | + | <li>1. Inoculated TSB with MR-1 (either from plate or glycerol stock) and grow overnight.</li> |
- | <li>place 1ml in 1.5ml freezer safe eppendorf tubes (do not fill eppendorfs with more than 1.5ml to allow for expansion by freezing).</li> | + | <li>2. add glycerol to culture to final concentration of 80% glycerol.</li> |
- | </ | + | <li>3. place 1ml in 1.5ml freezer safe eppendorf tubes (do not fill eppendorfs with more than 1.5ml to allow for expansion by freezing).</li> |
+ | </ul> | ||
+ | </div> | ||
</div> | </div> | ||
</div> | </div> | ||
Line 354: | Line 356: | ||
<div class="edges";> | <div class="edges";> | ||
<ul> | <ul> | ||
- | <li>cut two 3 inch PVC tubes .</li> | + | <li>1. cut two 3 inch PVC tubes .</li> |
- | <li>sandwich them with nafion cation exchange membrane between them.</li> | + | <li>2. sandwich them with nafion cation exchange membrane between them.</li> |
- | <li>add caulking around both sides of membrane-tube junction.</li> | + | <li>3. add caulking around both sides of membrane-tube junction.</li> |
- | <li>let dry for 15 minutes.</li> | + | <li>4. let dry for 15 minutes.</li> |
- | <li>repeat step 3 and 4.</li> | + | <li>5. repeat step 3 and 4.</li> |
- | <li>cut off excess membrane around junction.</li> | + | <li>6. cut off excess membrane around junction.</li> |
- | <li>add one more layer to seal up junction.</li> | + | <li>7. add one more layer to seal up junction.</li> |
- | <li>let dry overnight.</li> | + | <li>8. let dry overnight.</li> |
- | <li>cut 2.5in-3in x 12in of carbon cloth</li> | + | <li>9. cut 2.5in-3in x 12in of carbon cloth</li> |
- | <li>roll around tip of finger.</li> | + | <li>10. roll around tip of finger.</li> |
- | <li>weave titanium wire close to end edge of roll.</li> | + | <li>11. weave titanium wire close to end edge of roll.</li> |
- | <li>fold titanium wire up the length of the roll.</li> | + | <li>12 fold titanium wire up the length of the roll.</li> |
- | <li>twist excess wire around itself.</li> | + | <li>13. twist excess wire around itself.</li> |
- | <li>cut wire at .5in-1in.</li> | + | <li>14. cut wire at .5in-1in.</li> |
- | <li>push through stopper.</li> | + | <li>15. push through stopper.</li> |
- | <li>seal hole from wire with caulking.</li> | + | <li>16. seal hole from wire with caulking.</li> |
- | <li>let dry overnight. (two of these make up the cathode and the anode)</li> | + | <li>17. let dry overnight. (two of these make up the cathode and the anode)</li> |
- | <li>pour potassium ferricyanide in one chamber of the cell.</li> | + | <li>18. pour potassium ferricyanide in one chamber of the cell.</li> |
- | <li>carefully push stopper with carbon cloth to plug the chamber.</li> | + | <li>19. carefully push stopper with carbon cloth to plug the chamber.</li> |
- | <li>push hollow needle through stopper to let air out of chamber.</li> | + | <li>20. push hollow needle through stopper to let air out of chamber.</li> |
- | <li>pour overnight culture of MR-1 into other chamber.</li> | + | <li>21. pour overnight culture of MR-1 into other chamber.</li> |
- | <li>place glass slide in chamber.</li> | + | <li>22. place glass slide in chamber.</li> |
- | <li>carefully push stopper with carbon cloth to plug the chamber.</li> | + | <li>23. carefully push stopper with carbon cloth to plug the chamber.</li> |
- | <li>push new sterile hollow needle in stopper into air bubble in chamber to let out any CO2 bacteria will produce.</li> | + | <li>24. push new sterile hollow needle in stopper into air bubble in chamber to let out any CO2 bacteria will produce.</li> |
- | <li>open ExcelINX up on computer.</li> | + | <li>25. open ExcelINX up on computer.</li> |
- | <li>connect electrodes from DMM to cathode and anode (remember which channels are being used).</li> | + | <li>26. connect electrodes from DMM to cathode and anode (remember which channels are being used).</li> |
- | <li>start ExcelINX.</li> | + | <li>27. start ExcelINX.</li> |
</ul> | </ul> | ||
</div> | </div> |
Revision as of 20:14, 17 October 2014
Important Protocols
Glycerol Stock Preparation
- 1. Inoculated TSB with MR-1 (either from plate or glycerol stock) and grow overnight.
- 2. add glycerol to culture to final concentration of 80% glycerol.
- 3. place 1ml in 1.5ml freezer safe eppendorf tubes (do not fill eppendorfs with more than 1.5ml to allow for expansion by freezing).
Microbial Fuel Cell Assembly
- 1. cut two 3 inch PVC tubes .
- 2. sandwich them with nafion cation exchange membrane between them.
- 3. add caulking around both sides of membrane-tube junction.
- 4. let dry for 15 minutes.
- 5. repeat step 3 and 4.
- 6. cut off excess membrane around junction.
- 7. add one more layer to seal up junction.
- 8. let dry overnight.
- 9. cut 2.5in-3in x 12in of carbon cloth
- 10. roll around tip of finger.
- 11. weave titanium wire close to end edge of roll.
- 12 fold titanium wire up the length of the roll.
- 13. twist excess wire around itself.
- 14. cut wire at .5in-1in.
- 15. push through stopper.
- 16. seal hole from wire with caulking.
- 17. let dry overnight. (two of these make up the cathode and the anode)
- 18. pour potassium ferricyanide in one chamber of the cell.
- 19. carefully push stopper with carbon cloth to plug the chamber.
- 20. push hollow needle through stopper to let air out of chamber.
- 21. pour overnight culture of MR-1 into other chamber.
- 22. place glass slide in chamber.
- 23. carefully push stopper with carbon cloth to plug the chamber.
- 24. push new sterile hollow needle in stopper into air bubble in chamber to let out any CO2 bacteria will produce.
- 25. open ExcelINX up on computer.
- 26. connect electrodes from DMM to cathode and anode (remember which channels are being used).
- 27. start ExcelINX.