Team:WashU StLouis
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- | < | + | <h1>Engineering <span style="font-style: italic;">E. coli</span> |
+ | to Fix Nitrogen and Regulating Transcription with Light<br> | ||
+ | </h1> | ||
+ | <p> </p> | ||
+ | <h3> Why are we doing this project? </h3> | ||
+ | <div style="text-align: left;">Synthetic biology is an | ||
+ | exciting area of research that aims to | ||
+ | genetically improve organisms to make them more efficient and hopefully | ||
+ | more useful to us as well. The human population in 1950 was 2.5 | ||
+ | billion, yet it is predicted to surpass 9 billion by 2050. Even | ||
+ | with population growth slowing, increasing life spans and standards of | ||
+ | living will soon tax our natural resources. One of the most concerning | ||
+ | is our food supply. The agriculture industry needs a revolution in | ||
+ | order to keep up with our expected growth rates. Currently about 80% of | ||
+ | chemically fixated nitrogen is used as agricultural fertilizers, the | ||
+ | majority in developed lands. Intracellular nitrogen fixation in | ||
+ | crops could help to sustain the burgeoning world population, especially | ||
+ | in areas with less fertile soil without taxing the planet’s waterways. | ||
+ | The exponential increase in nitrogen fertilizer has led to more runoff | ||
+ | into rivers and oceans. Fertilizers then provide nutrition for algal | ||
+ | blooms that result in hypoxia and form oceanic dead zones. These dead | ||
+ | zones lead to the death of marine species and have potentially large | ||
+ | economic consequences. <br> | ||
<br> | <br> | ||
- | + | The ramifications of nitrogen fertilizer runoff can be averted by | |
- | + | genetically engineering plant crops to fix their own nitrogen. Some | |
- | + | cyanobacteria fix nitrogen for nutritional needs, while most organisms | |
+ | can only acquire it from the food it consumes. Synthetic biology allows | ||
+ | us to transfer this ability to fix nitrogen to a heterologous host that | ||
+ | has many genetic tools, <span style="font-style: italic;">Escherichia | ||
+ | coli</span>, so that we can learn how to give single cell organisms, | ||
+ | and eventually chloroplasts the ability to create their own nitrogen | ||
+ | fertilizer.<br> | ||
<br> | <br> | ||
- | < | + | Diazotrophic (organisms that fix nitrogen) cyanobacteria such <span |
- | < | + | style="font-style: italic;">Nostoc |
- | < | + | Punctiforme</span> or <span style="font-style: italic;">Anabaena</span> |
- | + | use heterocysts (specialized nitrogen fixing | |
- | + | cells) to create a mini-anaerobic environment to aid nitrogen fixation. | |
- | + | However, <span style="font-style: italic;">Cyanothece</span> 51142, a | |
- | </ | + | non-heterocyst, fixes nitrogen in the same |
- | </td> | + | cell as photosynthesis by relying on a circadian metabolic process, |
+ | when there is less oxygen byproduct from photosynthesis. Our goal this | ||
+ | summer is to engineer the regulation of the proteins necessary for | ||
+ | nitrogen fixation so that they are highly repressed when activated by | ||
+ | broad spectrum light (such as the sun), and are highly active when | ||
+ | there is no light around, mimicking the cycle where photosynthesis | ||
+ | occurs during the day and nitrogen fixation occurs at night.<br> | ||
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+ | <div align="center"> <iframe | ||
+ | src="//www.youtube.com/embed/5B73_8vcENI" allowfullscreen="" | ||
+ | frameborder="0" height="360" width="640"></iframe> </div> | ||
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+ | <td style="width: 20%; text-align: center;"><a | ||
+ | href="http://info.flagcounter.com/4sbs"><img | ||
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+ | width="100%"> <a name="2"></a><!-- Content goes here --> | ||
+ | <h3> How does our project work?</h3> | ||
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+ | <td style="vertical-align: top; width: 30%;"><img | ||
+ | style="width: 100%;" alt="WashU project" | ||
+ | src="https://static.igem.org/mediawiki/2014/4/4e/WashU_Project_Overview.png"></td> | ||
+ | <td | ||
+ | style="vertical-align: middle; width: 70%; text-align: justify;">Our | ||
+ | team worked this summer on two projects towards a common purpose. <br> | ||
+ | Richard and Caroline worked in the Pakrasi lab under Dr. Pakrasi, with | ||
+ | Andrew Ng, Bert Berla, and Deng Liu as advisors on the getting nitrogen | ||
+ | fixation working in <span style="font-style: italic;">E. coli.</span> <br> | ||
+ | Benjamin and Jeffrey worked in the Moon lab under Dr. Moon, with Cheryl | ||
+ | Immethun as an advisor, and created a repressor system to turn off | ||
+ | transcription of a reporter protein in the light.<br> | ||
+ | <br> | ||
+ | For more information, please visit our <a | ||
+ | href="https://2014.igem.org/Team:WashU_StLouis/Project">project</a> tab.</td> | ||
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- | + | bgcolor="#ffffff" width="100%"><!-- Content goes here --> <a name="3"></a> | |
- | <!-- Content goes here --> | + | <h3> What did we accomplish? </h3> |
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- | <h3> What | + | style="text-align: left; width: 100%; margin-left: auto; margin-right: auto;" |
- | <p>There are two key components of our project: < | + | border="0" cellpadding="5" cellspacing="5"> |
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+ | <p style="text-align: justify;">There | ||
+ | are two key components of our | ||
+ | project: </p> | ||
+ | <p style="text-align: justify;">Richard | ||
+ | and Caroline have been working in the Pakrasi lab, and have | ||
+ | been using genes from cyanobacteria to get nitrogen fixation working in | ||
+ | <i> E. coli </i>. They are testing | ||
+ | nitrogen fixation by | ||
+ | running acetylene reduction assays and designing experiments to test | ||
+ | the optimal criteria (ie. <i> E. coli </i> strains, temperature, pH, | ||
+ | nitrogen source) to get maximum results. For more info, visit the <a | ||
+ | href="https://2014.igem.org/Team:WashU_StLouis/Project/nif">nitrogenase | ||
+ | </a>tab.<br> | ||
+ | </p> | ||
+ | <p style="text-align: justify;">Ben | ||
+ | and Jeffrey have been | ||
+ | working in the Moon lab, and have been busy cloning plasmids to create | ||
+ | a system that represses and expresses a fluorescent protein with the | ||
+ | presence and absence of light and running experiments to test the | ||
+ | induction levels compared to various positive and negative controls. | ||
+ | For more info, visit the <a | ||
+ | href="https://2014.igem.org/Team:WashU_StLouis/Project/light">light | ||
+ | regulation</a> tab.</p> | ||
+ | </td> | ||
+ | <td | ||
+ | style="vertical-align: top; width: 20%;"><img style="width: 100%;" | ||
+ | alt="nitrogenius" | ||
+ | src="https://static.igem.org/mediawiki/2014/7/70/WashU_nitrogenius_home.jpg"></td> | ||
+ | </tr> | ||
+ | </tbody> | ||
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<h3> Who will our project help?</h3> | <h3> Who will our project help?</h3> | ||
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+ | style="vertical-align: top; width: 20%; text-align: center;"><img | ||
+ | style="width: 100%;" alt="the world" | ||
+ | src="https://static.igem.org/mediawiki/2014/3/35/WashU_TheWorld.jpg">Image | ||
+ | from <a | ||
+ | href="http://blogs-images.forbes.com/actiontrumpseverything/files/2012/05/47311_Papel-de-Parede-Planeta-Terra_1600x12001.jpg">here</a><br> | ||
+ | </td> | ||
+ | <td | ||
+ | style="vertical-align: top; width: 80%;"> Our project is the first | ||
+ | step | ||
+ | of a much larger, much | ||
+ | more complex endeavor. Nitrogen overabundance and nitrogen depletion | ||
+ | are simultaneously big stumbling blocks in modern agriculture. The | ||
+ | solution to both of these problems would be to endow plants themselves | ||
+ | with the ability to fix nitrogen so that they could autonomously supply | ||
+ | their own nitrogen for proteins, DNA, etc. We are taking the first step | ||
+ | towards this ambitious goal by studying how the genes for nitrogen | ||
+ | fixation from cyanobacteria work in different environments and | ||
+ | constructing an artificial transcriptional system. We are currently | ||
+ | working in <i> E. coli </i> because it is easy to engineer, but the | ||
+ | next step would be to move into a cyanobacteria more closely related to | ||
+ | chloroplasts. We hope that by making these initial steps that we may be | ||
+ | helping to pave the way for future research that may put an end to | ||
+ | world hunger.</td> | ||
+ | </tr> | ||
+ | </tbody> | ||
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+ | <p style="text-align: left;"><br> | ||
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Revision as of 18:25, 17 October 2014
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