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Team:TU Delft-Leiden/Modeling/CodeRepository
From 2014.igem.org
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| - | + | <h3>Curli Module</h3> | |
| - | + | <p><a href="https://static.igem.org/mediawiki/2014/b/be/TUDelft_2014_Curli_Server_celllevel.m">The curli gene and cell level code.</a></p> | |
| - | <h3> | + | <p><a href="https://static.igem.org/mediawiki/2014/9/90/TUDelft_2014_Colony_ComputePersistenceLength.m">Find the persistence length of a curli.</a></p> |
| - | + | <p><a href="https://static.igem.org/mediawiki/2014/b/b3/TUDelft_2014_Curli_Colony_FitDensity.m">Fit the density from the cell to the colony level.</a></p> | |
| - | <p><a href="https://static.igem.org/mediawiki/2014/ | + | <p><a href="https://static.igem.org/mediawiki/2014/d/dd/TUDelft_2014_Curli_colonylevel_Light.m">Calculate if there is percolation as function of time.</a></p> |
| - | <p><a href="https://static.igem.org/mediawiki/2014/ | + | <p><a href="https://static.igem.org/mediawiki/2014/2/2c/TUDelft_2014_Colony_Calculate_Resistance.m">Simulate an experiment on the colony level.</a></p> |
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| - | <h3> | + | <h3>Landmine Module</h3> |
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| - | <p><a href="https://static.igem.org/mediawiki/2014/ | + | <p><a href="https://static.igem.org/mediawiki/2014/5/51/Delft2014_StandardActivation.m">Standard Activation</a></p> |
| - | <p><a href="https://static.igem.org/mediawiki/2014/ | + | <p><a href="https://static.igem.org/mediawiki/2014/8/84/Delft2014_CooperativeActivation.m">Cooperative Activation</a></p> |
| - | <p><a href="https://static.igem.org/mediawiki/2014/ | + | <p><a href="https://static.igem.org/mediawiki/2014/f/f8/Delft2014_PromoterModel.m">Promoter Model Fitter</a></p> |
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Revision as of 16:50, 17 October 2014
Code Repository
On this page, links to the Matlab scripts we made for our modeling efforts are given. Right clicking the link and choosing "Save link as..." allows you to save the code to your computer.
Curli Module
The curli gene and cell level code.
Find the persistence length of a curli.
Fit the density from the cell to the colony level.
Calculate if there is percolation as function of time.
Simulate an experiment on the colony level.
EET Module
Flux Balance Analysis
Comparison with and without EET
EET Complex Assembly
EET Pathway Assembly Solver (Simple)
EET Pathway Assembly Solver (Simple) for varying d-ALA concentration
Landmine Module
