Team:UIUC Illinois/Software/Evolvalvability

From 2014.igem.org

(Difference between revisions)
Line 11: Line 11:
<div id="page">
<div id="page">
<div>
<div>
-
<h2> Having trouble with finding the best enzymes for your cut sites? </h2>
+
<h2> Do you fear that your plasmid will be lost by mutation? </h2>
-
   <h2>Here is our <font color= "red">cutsultant</font> software that will potentially suggest you the optimal enzyme! </h2>
+
   <h2>Here is our <font color= "red">EvoAnalyzer</font> software that will predict mutational tolerance of plasmid in K12 E.Coli strain!! </h2>
<div class="leftparagraph">
<div class="leftparagraph">

Revision as of 04:25, 17 October 2014


Do you fear that your plasmid will be lost by mutation?

Here is our EvoAnalyzer software that will predict mutational tolerance of plasmid in K12 E.Coli strain!!

Description: Currently there are few websites that give you only cut sites, however we heard that many synthetic biologists struggle with obtaining optimized enzymes Cutsultant is a python script created to expedite the process of finding restriction enzymes that produce the most optimal digestions. Using Biopython's restriction enzyme package, as well as user-inputted sequences and available restriction enzymes Cutsultant can use one or two sequences (typically a plasmid and/or a plasmid with an insert) and generate lists of enzymes that produce an optimal cut based on a a few parameters, such as number of cuts, minimum band length, maximum band length, and differentiability of bands.