Team:Wageningen UR/project/greenhouse

From 2014.igem.org

(Difference between revisions)
Line 40: Line 40:
<section id="introduction">
<section id="introduction">
<h2>Introduction</h2>
<h2>Introduction</h2>
-
<p>Biological control of <i>Fusarium oxysporum</i> using other living organisms has been explored previously and identified <i>Pseudomonas spp.</i> as a possible control agent due to the production of growth inhibitory substances [1]. <i>Pseudomonas putida</i> is a root colonizing bacteria and is therefore expected to be found in the rhizosphere [2] where <i>F. oxysporum</i> attacks the plant. Engineering a bacterial platform for biological control of <i>F. oxysporum</i> based on <i>P. putida</i> therefore shows great potential.  
+
<p>Biological control of <i>Fusarium oxysporum</i> using other living organisms has been explored previously and identified <i>Pseudomonas spp.</i> as a possible control agent due to the production of growth inhibitory substances [1]. <i>Pseudomonas putida</i> is a root colonizing bacteria and is therefore expected to be found in the rhizosphere [2] where <i>F. oxysporum</i> attacks the plant. Engineering a bacterial platform for biological control of <i>Fusarium oxysporum f. sp. cubense</i> (Foc) based on <i>P. putida</i> therefore shows great potential.  
-
In our experiments, <i>P. putida</i> was genetically modified to overexpress four different fungal growth inhibitors (2,4-DAPG, DMDS & DMTS, pyoverdine and Chitinase) to prevent <i>F. oxysporum</i> from entering the roots of banana plants (see <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/fungal_inhibition">inhibition</a>). Functionality was tested  <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/fungal_inhibition#results"><i>in vitro</i></a> and <i>in vivo</i> by applying the control agent to the soil of pot grown banana plants (Figure 1). These plants were then infected with <i>F. oxysporum</i>. Adverse or beneficial effects of the active compounds produced by the genetically modified biological control agent on banana plants were investigated <i>in vivo</i>.</p>
+
In our experiments, <i>P. putida</i> was genetically modified to overexpress four different fungal growth inhibitors (2,4-DAPG, DMDS & DMTS, pyoverdine and Chitinase) to prevent Foc from entering the roots of banana plants (see <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/fungal_inhibition">inhibition</a>). Functionality was tested  <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/fungal_inhibition#results"><i>in vitro</i></a> and <i>in vivo</i> by applying the control agent to the soil of pot grown banana plants (Figure 1). These plants were then infected with Foc. Adverse or beneficial effects of the active compounds produced by the genetically modified biological control agent on banana plants were investigated <i>in vivo</i>.</p>
<figure>
<figure>
<img src="https://static.igem.org/mediawiki/2014/0/08/Wageningen_UR_greenhouse_banana_plants.JPG"width="80%"/> <figcaption style="font-size:11px;font-weight:bold">Figure 1: Banana plants in greenhouse. Plants are beeing labled and inoculated with four different strains of <i>P. putida</i> each producing a different fungal growth inhibitor.
<img src="https://static.igem.org/mediawiki/2014/0/08/Wageningen_UR_greenhouse_banana_plants.JPG"width="80%"/> <figcaption style="font-size:11px;font-weight:bold">Figure 1: Banana plants in greenhouse. Plants are beeing labled and inoculated with four different strains of <i>P. putida</i> each producing a different fungal growth inhibitor.
Line 49: Line 49:
<section id="application">
<section id="application">
<h2>Application</h2>
<h2>Application</h2>
-
<p>Four different organisms were tested for their functionality as biological control agents. Each organism produced a different active compound. Degree of wilt and fungal biomass of banana plants inoculated with <i>F. oxysporum</i> and the different biological control agents will be determined. Non-inoculated plants and plants solely inoculated with the biological control agent but not with <i>F. oxysporum</i> will serve as controls. Plants treated with the wild type <i>Pseudomonas putida</i> strain will serve as a control to confirm that the effects are based on the new or overexpressed active compounds. Possible positive or negative effects on growth will be tested by determining the above ground biomass of the banana plant after 4 weeks. Experiments will be conducted with three biological replicates.  
+
<p>Four different organisms were tested for their functionality as biological control agents. Each organism produced a different active compound. Degree of wilt and fungal biomass of banana plants inoculated with Foc and the different biological control agents will be determined. Non-inoculated plants and plants solely inoculated with the biological control agent but not with Foc will serve as controls. Plants treated with the wild type <i>Pseudomonas putida</i> strain will serve as a control to confirm that the effects are based on the new or overexpressed active compounds. Possible positive or negative effects on growth will be tested by determining the above ground biomass of the banana plant after 4 weeks. Experiments will be conducted with three biological replicates.  
There are seven treatments in total. Each treatment was coupled with a mock tratment.  
There are seven treatments in total. Each treatment was coupled with a mock tratment.  
-
Mock plants are plants that are not infected with <i>F. oxysporum</i>. Different treatments are listed below. </p>
+
Mock plants are plants that are not infected with Foc. Different treatments are listed below. </p>
<br/>
<br/>
<p>Treatments:</p><ol>
<p>Treatments:</p><ol>
Line 66: Line 66:
</ol>
</ol>
<br/>
<br/>
-
<p>To give the control agent the possibility of colonizing the rhizosphere before confronting the plant with  <i>F. oxysporum</i> the plants were inoculated with the different Pseudomonas putida constructs 48 hours prior to fungal inoculation. 5 ml of bacterial inoculum was applied by inserting it with a syringe close to the roots (at OD<sub>600</sub> of 0.25)(Figure 2). Two days later 5 ml of the fungal inoculum (spore-count of 1 million spores per ml) was applied likewise. Additionally, two maize kernels inoculated with  <i>F. oxysporum</i> were applied to the soil of each plant to conserve the inoculum within the pot. Since the production of the fungal growth inhibitors in this test organisms is induced by IPTG the plants are watered with a solution containing IPTG.</p>
+
<p>To give the control agent the possibility of colonizing the rhizosphere before confronting the plant with  Foc the plants were inoculated with the different Pseudomonas putida constructs 48 hours prior to fungal inoculation. 5 ml of bacterial inoculum was applied by inserting it with a syringe close to the roots (at OD<sub>600</sub> of 0.25)(Figure 2). Two days later 5 ml of the fungal inoculum (spore-count of 1 million spores per ml) was applied likewise. Additionally, two maize kernels inoculated with  Foc were applied to the soil of each plant to conserve the inoculum within the pot. Since the production of the fungal growth inhibitors in this test organisms is induced by IPTG the plants are watered with a solution containing IPTG.</p>
<figure>
<figure>
<img src="https://static.igem.org/mediawiki/2014/6/69/Wageningen_UR_greenhouse_injecting_plants.JPG"width="80%"/> <figcaption style="font-size:11px;font-weight:bold">Figure 2: Injecting banana plants in with <i>P. putida</i> inoculum
<img src="https://static.igem.org/mediawiki/2014/6/69/Wageningen_UR_greenhouse_injecting_plants.JPG"width="80%"/> <figcaption style="font-size:11px;font-weight:bold">Figure 2: Injecting banana plants in with <i>P. putida</i> inoculum

Revision as of 00:54, 17 October 2014

Wageningen UR iGEM 2014

Testing Pseudomonas putida in vivo on banana plants


Introduction

Biological control of Fusarium oxysporum using other living organisms has been explored previously and identified Pseudomonas spp. as a possible control agent due to the production of growth inhibitory substances [1]. Pseudomonas putida is a root colonizing bacteria and is therefore expected to be found in the rhizosphere [2] where F. oxysporum attacks the plant. Engineering a bacterial platform for biological control of Fusarium oxysporum f. sp. cubense (Foc) based on P. putida therefore shows great potential. In our experiments, P. putida was genetically modified to overexpress four different fungal growth inhibitors (2,4-DAPG, DMDS & DMTS, pyoverdine and Chitinase) to prevent Foc from entering the roots of banana plants (see inhibition). Functionality was tested in vitro and in vivo by applying the control agent to the soil of pot grown banana plants (Figure 1). These plants were then infected with Foc. Adverse or beneficial effects of the active compounds produced by the genetically modified biological control agent on banana plants were investigated in vivo.

Figure 1: Banana plants in greenhouse. Plants are beeing labled and inoculated with four different strains of P. putida each producing a different fungal growth inhibitor.

Application

Four different organisms were tested for their functionality as biological control agents. Each organism produced a different active compound. Degree of wilt and fungal biomass of banana plants inoculated with Foc and the different biological control agents will be determined. Non-inoculated plants and plants solely inoculated with the biological control agent but not with Foc will serve as controls. Plants treated with the wild type Pseudomonas putida strain will serve as a control to confirm that the effects are based on the new or overexpressed active compounds. Possible positive or negative effects on growth will be tested by determining the above ground biomass of the banana plant after 4 weeks. Experiments will be conducted with three biological replicates. There are seven treatments in total. Each treatment was coupled with a mock tratment. Mock plants are plants that are not infected with Foc. Different treatments are listed below.


Treatments:

  1. Wildtype P. putida KT2440
  2. P. putida producing 2,4-DAPG
  3. P. putida producing DMDS and DMTS
  4. P. putida producing pyoverdine
  5. P. putida producing chitinase
  6. Culture mix of number 1,2,3, and 4
  7. Water (control)

To give the control agent the possibility of colonizing the rhizosphere before confronting the plant with Foc the plants were inoculated with the different Pseudomonas putida constructs 48 hours prior to fungal inoculation. 5 ml of bacterial inoculum was applied by inserting it with a syringe close to the roots (at OD600 of 0.25)(Figure 2). Two days later 5 ml of the fungal inoculum (spore-count of 1 million spores per ml) was applied likewise. Additionally, two maize kernels inoculated with Foc were applied to the soil of each plant to conserve the inoculum within the pot. Since the production of the fungal growth inhibitors in this test organisms is induced by IPTG the plants are watered with a solution containing IPTG.

Figure 2: Injecting banana plants in with P. putida inoculum

Results


Future work


References

  1. Lemanceau P. Alabouvette C. (1991) Biological control of fusarium diseases by fluorescent Pseudomonas and non-pathogenic Fusarium. Crop Protection. Vol. 10 Issue 4: 279–286
  2. Espinosa-Urgel M, Kolter R, Ramos JL.(2002) Root colonization by Pseudomonas putida: love at first sight. Microbiology. Feb;148(Pt 2):341-3.