Team:TCU Taiwan/Parts

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Revision as of 14:32, 15 October 2014

 
Parts
  
Favorite parts
 
BBa_K1473005
 
Phagemid pBluescript is a special plasmid, it functions as a normal plasmid when transformed into bacteria. But when helper phage M13KO7 infect the bacteria, it will produce progeny M13 phage as vector for pBluescript. 

pBluescript contains a f1 ori while M13KO7 helper phage’s f1 ori has been knock-down. So after the infection of M13KO7, its genome can produce protein and replicate but these proteins will package pBluescript as their true “genome”. As a result, the progeny phage’s genome will only contains pBluescript’s MCS, they cannot make next generation.
Source : XVIVO/Barcroft USA 
BBa_K1473005
 
 
BBa_K1473009
 
Here we combined a CRISPR system(BBa_K1218011) with an inducible promoter(BBa_K914003). The CRISPR system contains a tracrRNA , a Cas9 protein and a minimal CRISPR array, it functions to knockout target gene. We give this system an inducible promoter so we can decided when to switch if on or off.
Source :Science

BBa_K1473009
 
 
 
Parts Sandbox
 
NameTypeDescriptionDesignerLength
  BBa_K1473001DNAgRNA 1 Shan, Zhe22
  BBa_K1473002DNAgRNA 2Shan, Zhe22
  BBa_K1473003DNAgRNA 3Shan, Zhe22
  BBa_K1473004DNAgRNA 4Shan, Zhe22
  BBa_K1473005Plasmid_Backbonephagemid pBluescript Shan, Zhe2929
  BBa_K1473006DNAgRNA for ampR 1Shan, Zhe22
  BBa_K1473007DNAgRNA for ampR 2Shan, Zhe22
  BBa_K1473008DNAgRNA for ampR 3Shan, Zhe22
 BBa_K1473009CodingpRha induced CRISPRShan, Zhe5011
  BBa_K1473010DNAgRNA for ampR 4Shan, Zhe22
  BBa_K1473011DNAgRNA for ampR 5Shan, Zhe22
  BBa_K1473012DNAgRNA for NeoR/kanR 1Shan, Zhe22
  BBa_K1473013DNAgRNA for NeoR/kanR 2Shan, Zhe22
  BBa_K1473014DNAgRNA for NeoR/kanR 3Shan, Zhe22
  BBa_K1473015DNAgRNA for NeoR/kanR 4Shan, Zhe22
  BBa_K1473016DNAgRNA for NeoR/kanR 5Shan, Zhe22
  BBa_K1473017DNAgRNA for tetR 1Shan, Zhe22
  BBa_K1473018DNAgRNA for tetR 2Shan, Zhe22
  BBa_K1473019DNAgRNA for tetR 3Shan, Zhe22
  BBa_K1473020DNAgRNA for tetR 4Shan, Zhe22
  BBa_K1473021DNAgRNA for tetR 5Shan, Zhe22
TCU_Taiwan 2014 iGEM Team Parts
gRNA
 
fig.1
   

We put a sacI restriction cutting site downstream to gRNA (not shown in sequence information) and ligated it back to pSB1C3 with correct prefix and surfix. Then we cut this recombinant plasmid with sacI and run gel electrophoresis for testing. As we can see in this image, because pSB1C3 only contains 1 sacI cutting site itself, so it would not be cut into 2 parts when no gRNA is ligated inside. But if there is, then sacI will cut this recombinant plasmid into 2 parts, whose lengths are 939 bp and 1159 bp. Obviously, we have successfully synthesized this gRNA.
 

Parts Submitted to the Registry

What information do I need to start putting my parts on the Registry?

An important aspect of the iGEM competition is the use and creation of standard biological parts. Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The "groupparts" tag will generate a table with all of the parts that your team adds to your team sandbox.

Note that if you want to document a part you need to document it on the Registry, not on your team wiki. Future teams and other users and are much more likely to find parts on the Registry than on your team wiki.

Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without a need to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.

When should you put parts into the Registry?

As soon as possible! We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better recall you will have of all details surrounding your parts. Remember you don't need to send us the DNA to create an entry for a part on the Registry. However, you must send us the sample/DNA before the Jamboree. Only parts for which you have sent us samples/DNA are eligible for awards and medal requirements.

The information needed to initially create a part on the Registry is:

  1. Part Name
  2. Part type
  3. Creator
  4. Sequence
  5. Short Description (60 characters on what the DNA does)
  6. Long Description (Longer description of what the DNA does)
  7. Design considerations

We encourage you to put up much more information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. Check out part BBa_K404003 for an excellent example of a highly characterized part.

You can add parts to the Registry at our Add a Part to the Registry link.

Parts Table
Any parts your team has created will appear in this table below:
<groupparts>iGEM013 TCU_Taiwan</groupparts>
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Team Members Project Parts Human Pratics Modeling Safety Notebook Attributions

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