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Team:AMU-Poznan/Modeling
From 2014.igem.org
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If there is difference in algoruthm we always take RNA folding over DNA folding</br> | If there is difference in algoruthm we always take RNA folding over DNA folding</br> | ||
mfold</br> | mfold</br> | ||
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RNAstructure</br> | RNAstructure</br> | ||
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RNAfold</br> | RNAfold</br> | ||
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Revision as of 09:51, 15 October 2014
Survey14.10.2014 31 survey responses: what survey answerers think that RNAi is 
what they think that sh-miRs are
what they think that shRNAs are
what literature do they know about sh-miRs
what they find important in bioinformatic software
what they find important in sh-miR designer
how long will they wait for software response
survey answerers
their sex
and age
ModelingWe decided to pay more attention to model sh-miR molecules with different RNA 2D structure prediction software (we use RNAfold in our software). Here are our results: analyzed sequence: CTAAAGAAGGTATATTGCTGTTGACAGTGAGCGACTGUUUGUAUUCGCCCUAGCGCCTGTGAAGCCACAGATGGGGCGCUAUGGCGAAUACAAACATGCCTACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCA We always take first generated structure made with default options If there is difference in algoruthm we always take RNA folding over DNA folding mfold
RNAstructure
RNAfold
???
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