Team:EPF Lausanne/Data
From 2014.igem.org
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To validate this hypothesis we set ourselves three intermediate objectives: | To validate this hypothesis we set ourselves three intermediate objectives: | ||
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- | <u>First intermediate objective:</u> | + | <u>First intermediate objective:</u> Explore if and how CpxR dimerizes in live E.Coli by analyzing the various orientations of CpxR - IFP1.4 fusions. |
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<u>Third intermediate objective:</u> Analyse the spatial dynamics of the functional CpxR - IFP1.4 fusion protein by microscopy. | <u>Third intermediate objective:</u> Analyse the spatial dynamics of the functional CpxR - IFP1.4 fusion protein by microscopy. | ||
- | </ | + | <br /><br /> |
+ | To validate these three objectives, we designed three experiments: | ||
+ | |||
+ | <br /><br /> | ||
+ | <u>First Experiment:</u> Build constructs with all the possible orientations between CpxR and IFP1.4 and monitor activation upon 50mM KCl stress activation | ||
+ | <br /><br /> | ||
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+ | <u>Second Experiment:</u> Induce signal activation by stressing C-termina CpxR - split IFP1.4 constructs with 50 mM KCl, and subsequently replacing the media with a 0 mM KCl solution | ||
+ | <br /><br /> | ||
+ | |||
+ | <u>Third Experiment:</u> Analyse the spatial dynamics of the functional CpxR - IFP1.4 fusion protein by microscopy. | ||
Revision as of 23:28, 11 October 2014
DATA
Bacterial Biosensors
General Objective: Develop a fast and specific biosensor allowing spatiotemporal analysis of stimuli
To achieve the objective mentioned above, we put forward the following hypothesis:
Hypothesis: Combining protein complementation techniques (split IFP1.4) to proteins going through dimerization (CpxR) upon activation due to a given stimuli (enveloppe stress) allows fast and specific spatiotemporal analysis of a stimuli.
To validate this hypothesis we set ourselves three intermediate objectives:
First intermediate objective: Explore if and how CpxR dimerizes in live E.Coli by analyzing the various orientations of CpxR - IFP1.4 fusions.
Second intermediate objective: Analyse the temporal dynamics of the functional CpxR - IFP1.4 fusion protein by change of media.
Third intermediate objective: Analyse the spatial dynamics of the functional CpxR - IFP1.4 fusion protein by microscopy.
To validate these three objectives, we designed three experiments:
First Experiment: Build constructs with all the possible orientations between CpxR and IFP1.4 and monitor activation upon 50mM KCl stress activation
Second Experiment: Induce signal activation by stressing C-termina CpxR - split IFP1.4 constructs with 50 mM KCl, and subsequently replacing the media with a 0 mM KCl solution
Third Experiment: Analyse the spatial dynamics of the functional CpxR - IFP1.4 fusion protein by microscopy.