Team:Austin Texas/human practices

Human Practices

Caffeinated Coli

Figure 1. Map of coffee shops we visited.

Figure 2. Relative levels of caffeine in house coffee samples from around Austin.

A couple of weeks later, we presented this data set at the 2014 South by Southwest (SXSW) festival as part of the SXSW Create section, which focuses on maker/hacker/do-it-yourself science and technology. As part of this outreach, we explained our project and synthetic biology to a wide range of people (figure 3 [NEED] - poster). Many people who came by had little to no background in science or technology, and even most of the ones who did had not heard about synthetic biology. By discussing our experiments with bacteria and coffee, an interesting and easy to understand application, we were able to explain what synthetic biology is and how it can be used in a beneficial way. Occasionally, these conversations would branch out into wider topics of science and technology.

This included a follow up conversation with one of the owners of the "Brew & Brew", whose coffee seemed to have significantly more caffeine. The owners concluded, after discussing our project and the coffee brewing process, that the specific pot of coffee was probably just not fully drained, i.e. there was less water in the batch than normal, resulting in a higher caffeine/volume content. However, similar conversations were had between the entire team and the various coffee shops and baristas during the collection and presentation processes.

Measuring Caffeine Content

Standard growth curve of knockout strain grown with different amounts of caffeine.

The E. coli we used are a synthetic strain, previously made by the 2012 UT Austin iGEM team [Link/Reference 2012 team page!]. This strain lacks [...its normal guanine synthesis pathway], but contains a plasmid with a set of genes that enables the organism to synthesize guanine from xanthine and many of its derivatives, including caffeine. Without caffeine (or other xanthines), the strain cannot not grow. When caffeine is added, the strain grows normally until the caffeine is completely metabolized, at which point the cells can no longer synthesize guanine, and cease to grow. Thus, by looking at the relative growth of the strain with different samples of coffee and comparing it to a standard curve of growth in solutions with known amounts of caffeine, we could somewhat accurately measure the amount of caffeine in the coffee.

Cultures of knockout strain grown with collected coffee samples.

Needs more content, but that's a start.