Team:TU Delft-Leiden/Modeling/CodeRepository

From 2014.igem.org

(Difference between revisions)

Revision as of 15:33, 11 October 2014

Code Repository

On this page, links to the Matlab scripts we made for our modeling efforts are given. Right clicking the link and choosing "Save link as..." allows you to save the code to your computer.

Landmine Module

Standard Activation

Cooperative Activation

Promoter Model Fitter

EET Module

Flux Balance Analysis

FBA Constructed Model

Comparison with and without EET

FBA

FBA Uptake without EET

FVA

Phase Plane Analysis FBA

Phase Plane Analysis FVA

Robustness Analysis EET

Robustness Analysis Uptake

EET Complex Assembly

EET Pathway Assembly

EET Pathway Assembly Solver

EET Pathway Assembly (Simple)

EET Pathway Assembly Solver (Simple)

EET Pathway Assembly Solver (Simple) for varying d-ALA concentration

@@ Line 11: / Line 11: @@
 <h2> Code Repository </h2>
-<p>On this page, links to the Matlab scripts we made for our modeling efforts are given. Right clicking the link and choosing "Save link as..." allows you to save the code to your computer. </p>
+<p>
+On this page, links to the Matlab scripts we made for our modeling efforts are given. Right clicking the link and choosing "Save link as..." allows you to save the code to your computer.
+</p>
 <br>
@@ Line 19: / Line 22: @@
 <p><a href="https://static.igem.org/mediawiki/2014/8/84/Delft2014_CooperativeActivation.m">Cooperative Activation</a></p>
 <p><a href="https://static.igem.org/mediawiki/2014/f/f8/Delft2014_PromoterModel.m">Promoter Model Fitter</a></p>
 <br>
 <h3>EET Module</h3>
 <h4>Flux Balance Analysis </h4>
+<p><a href="https://2014.igem.org/File:FBA_constructed_model.zip">FBA Constructed Model</a></p>
+<p><a href="https://2014.igem.org/File:Comp_with_without_EET.m">Comparison with and without EET</a></p>
+<p><a href="https://2014.igem.org/File:FBA.m">FBA</a></p>
+<p><a href="https://2014.igem.org/File:FBA_Uptake_without_EET.m">FBA Uptake without EET</a></p>
+<p><a href="https://2014.igem.org/File:FVA.m">FVA</a></p>
+<p><a href="https://2014.igem.org/File:Phase_Plane_Analysis.m">Phase Plane Analysis FBA</a></p>
+<p><a href="https://2014.igem.org/File:Phase_Plane_Analysis_Min_Max.m">Phase Plane Analysis FVA</a></p>
+<p><a href="https://2014.igem.org/File:Robustness_Analysis_EET.m">Robustness Analysis EET</a></p>
+<p><a href="https://2014.igem.org/File:Robustness_Analysis_Uptake.m">Robustness Analysis Uptake</a></p>
 <br>
 <h4>EET Complex Assembly </h4>
 <p><a href="https://static.igem.org/mediawiki/2014/6/60/Delft2014_EETpathway_assembly.m">EET Pathway Assembly</a></p>
@@ Line 31: / Line 46: @@
 <p><a href="https://static.igem.org/mediawiki/2014/8/84/Delft2014_EETpathway_assembly_simple_solver.m">EET Pathway Assembly Solver (Simple)</a></p>
 <p><a href="https://static.igem.org/mediawiki/2014/7/7e/Delft2014_EETvsdALA.m.m">EET Pathway Assembly Solver (Simple) for varying d-ALA concentration</a></p>
 <br>