Template:Kyoto/Notebook/DMS
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+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0731" class="kyoto-jump"></a> | ||
+ | <h3>7/31</h3> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="kyoto-author">Nakamura and Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th>EcoR1/(µL)</th> | ||
+ | <th>Xba1/(µL)</th> | ||
+ | <th>Spe1/(µL)</th> | ||
+ | <th>Pst1/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th>BSA/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3/24 dddD PCR product</td> | ||
+ | <td>3.2</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>21.8</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>18.5</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>6.5</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3 control</td> | ||
+ | <td>6.2</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>2.8</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0801" class="kyoto-jump"></a> | ||
+ | <h3>8/1</h3> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="kyoto-author">Murata and Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>3/24 dddD PCR product E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>3/24 dddD PCR product E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>Blank</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>pSB1C3 E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>pSB1C3 E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>Blank</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>9</td> | ||
+ | <td>3/24 dddD PCR product control</td> | ||
+ | <tr> | ||
+ | <td>10</td> | ||
+ | <td>pSB1C3 control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PSB1C3</td> | ||
+ | <td>13.3</td> | ||
+ | <td>1.90</td> | ||
+ | <td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD</td> | ||
+ | <td>10.8</td> | ||
+ | <td>1.64</td> | ||
+ | <td>0.15</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="kyoto-author">Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>8/1 PSB1C3 gel extraction product 2047bp</td> | ||
+ | <td>1.5</td> | ||
+ | <td>8/1 dddD gel extraction product 2545bp</td> | ||
+ | <td>6.9</td> | ||
+ | <td>10xT4Ligase</td> | ||
+ | <td>2</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>8.6</td> | ||
+ | <td>20</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th colspan=2>CompetentCells/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | <th>Medium</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PSB1C3-dddD</td> | ||
+ | <td>3</td> | ||
+ | <td>コンピ名</td> | ||
+ | <td>30</td> | ||
+ | <td>33</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0802" class="kyoto-jump"></a> | ||
+ | <h3>8/2</h3> | ||
+ | |||
+ | <h4>PCR Cloning</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>dddD without Pre-Suf</th> | ||
+ | <th>2x KAPA HiFi Hotstart Ready Mix/(µL)</th> | ||
+ | <th>F Pre-dddD PCR product 62/(µL)</th> | ||
+ | <th>Rv Spe1-dddD PCR product 68/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pick up</td> | ||
+ | <td>12.5</td> | ||
+ | <td>0.75</td> | ||
+ | <td>0.75</td> | ||
+ | <td>11</td> | ||
+ | <td>25</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>95°C</td> | ||
+ | <td>98°C</td> | ||
+ | <td>65°C</td> | ||
+ | <td>72°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5min</td> | ||
+ | <td>20sec</td> | ||
+ | <td>15sec</td> | ||
+ | <td>50sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 25cycle</p> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <p>8/2 Pre-dddD-Suf PCR product</p> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="kyoto-author">Honda,Nakamura and Matsumoto</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>15</td> | ||
+ | <td>0.6</td> | ||
+ | <td>0.6</td> | ||
+ | <td>13.8</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94°C</td> | ||
+ | <td>94°C</td> | ||
+ | <td>55°C</td> | ||
+ | <td>68°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Number</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>pSB1C3-dddD(1)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>pSB1C3-dddD(2)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>pSB1C3-dddD(3)</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Concentration Measurement</h4> | ||
+ | <span class="kyoto-author">Nakamura and Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD PCR product</td> | ||
+ | <td>245</td> | ||
+ | <td>1.59</td> | ||
+ | <td>2.17</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="kyoto-author">Nakamura and Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th>EcoR1/(µL)</th> | ||
+ | <th>Xba1/(µL)</th> | ||
+ | <th>Spe1/(µL)</th> | ||
+ | <th>Pst1/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th>BSA/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/2 dddD PCR product</td> | ||
+ | <td>8.2</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>16.8</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/2 dddD PCR product control</td> | ||
+ | <td>0.41</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>8.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>12.7</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>12.3</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3 control</td> | ||
+ | <td>0.04</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>8.4</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0803" class="kyoto-jump"></a> | ||
+ | <h3>8/3</h3> | ||
+ | |||
+ | <h4>@</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>pSB1C3-dddD(1)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>pSB1C3-dddD(2)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>pSB1C3-dddD(3)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>1kb ladder (3µL)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>1kb ladder (1µL)</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="kyoto-author">Tatsui</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kb ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>Blank</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>pSB1C3 2070bp</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>Blank</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>pSB1C3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>Blank</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>8/2 dddD PCR product 2544bp</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>Blank</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>9</td> | ||
+ | <td>8/2 dddD PCR product</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>@</td> | ||
+ | <td>1.37</td> | ||
+ | <td>0.42</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD PCR product</td> | ||
+ | <td>35</td> | ||
+ | <td>1.54</td> | ||
+ | <td>0.85</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0804" class="kyoto-jump"></a> | ||
+ | <h3>8/4</h3> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>40</td> | ||
+ | <td>1.6</td> | ||
+ | <td>1.6</td> | ||
+ | <td>36.8</td> | ||
+ | <td>80</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94°C</td> | ||
+ | <td>94°C</td> | ||
+ | <td>55°C</td> | ||
+ | <td>68°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>1</th> | ||
+ | <th>dddD+pSB1C3(1)-1</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>dddD+pSB1C3(2)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>dddD+pSB1C3(2)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>pSB1C3 control-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>dddD+pSB1C3(1)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>dddD+pSB1C3(2)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>dddD+pSB1C3(2)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>pSB1C3 control-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>9</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>10</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <p>Unexpected bands are confirmed in former Electrophoresis, so contamination of MilliQ or Quicktaq is suspected. For confirming contamination, PCR and Electrophoresis are conducted. </p> | ||
+ | <p>* suspicious samples for contamination</p> | ||
+ | <p>(1)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>*Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>4.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>(2)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>4.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>(3)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>*MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>4.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>(4)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>*Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>*MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>4.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94°C</td> | ||
+ | <td>94°C</td> | ||
+ | <td>55°C</td> | ||
+ | <td>68°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>(1)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>(2)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>(3)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>(4)</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0818" class="kyoto-jump"></a> | ||
+ | <h3>8/18</h3> | ||
+ | <h4>PCR</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <p>For confirming contamination of VF2 and VR primers, we pour samples into new tubes and perform PCR and Electrophoresis.</p> | ||
+ | <p>(1)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>4.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>control(2)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>8/2 Pcon3/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.6</td> | ||
+ | <td>4.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>(3)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>4.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>(4)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>8/2 Pcon3/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.2</td> | ||
+ | <td>0.6</td> | ||
+ | <td>4.0</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94°C</td> | ||
+ | <td>94°C</td> | ||
+ | <td>55°C</td> | ||
+ | <td>68°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Number</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>(1)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>(2)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>(3)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>(4)</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th>EcoR1/(µL)</th> | ||
+ | <th>Xba1/(µL)</th> | ||
+ | <th>Spe1/(µL)</th> | ||
+ | <th>Pst1/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th>BSA/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD 8/2 PCR product</td> | ||
+ | <td>5.5</td> | ||
+ | <td>0.7</td> | ||
+ | <td>-</td> | ||
+ | <td>0.7</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>2</td> | ||
+ | <td>-</td> | ||
+ | <td>11.1</td> | ||
+ | <td>20</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD 8/2 PCR product control</td> | ||
+ | <td>0.41</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>8.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>12.7</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>8.4</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3 control</td> | ||
+ | <td>0.64</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>8.4</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>40</td> | ||
+ | <td>1.6</td> | ||
+ | <td>1.6</td> | ||
+ | <td>36.8</td> | ||
+ | <td>80</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94°C</td> | ||
+ | <td>94°C</td> | ||
+ | <td>55°C</td> | ||
+ | <td>68°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Number</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>dddD+pSB1C3(1)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>dddD+pSB1C3(2)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>dddD+pSB1C3(2)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>pSB1C3 control-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>dddD+pSB1C3(1)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>dddD+pSB1C3(2)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>dddD+pSB1C3(2)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>pSB1C3 control-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>9</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>dddD control</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>dddD E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>@</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>pSB1C3 control</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>pSB1C3 E,S</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <tdpSB1C3</td> | ||
+ | <td>105</td> | ||
+ | <td>1.30</td> | ||
+ | <td>0.85</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD</td> | ||
+ | <td>105</td> | ||
+ | <td>1.27</td> | ||
+ | <td>0.73</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0819" class="kyoto-jump"></a> | ||
+ | <h3>8/19</h3> | ||
+ | <h4>Ligation</h4> | ||
+ | <span class="kyoto-author">Honda,Li,Yamauchi</span> | ||
+ | <p>(1)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>3.6</td> | ||
+ | <td>dddD</td> | ||
+ | <td>1</td> | ||
+ | <td>2xBuffer</td> | ||
+ | <td>5.6</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>11.2</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>(2)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>3.6</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>2xBuffer</td> | ||
+ | <td>5.6</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>1</td> | ||
+ | <td>11.2</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <div> | ||
+ | |||
+ | <a name="0820" class="kyoto-jump"></a> | ||
+ | <h3>8/20</h3> | ||
+ | <h4>Transformation</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th colspan=2>CompetentCells/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | <th>Medium</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/19 Ligation (1)</td> | ||
+ | <td>11.2</td> | ||
+ | <td>@</td> | ||
+ | <td>50</td> | ||
+ | <td>61.2</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/19 Ligation (2)</td> | ||
+ | <td>11.2</td> | ||
+ | <td>@</td> | ||
+ | <td>50</td> | ||
+ | <td>61.2</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Ligation</h4> | ||
+ | <span class="kyoto-author">Nakamura,Honda</span> | ||
+ | <p>(1)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>10.8</td> | ||
+ | <td>dddD</td> | ||
+ | <td>3</td> | ||
+ | <td>2xBuffer</td> | ||
+ | <td>16.8</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>33.6</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>(2)</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3</td> | ||
+ | <td>10.8</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>2xBuffer</td> | ||
+ | <td>16.8</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>3</td> | ||
+ | <td>3</td> | ||
+ | <td>33.6</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Transformation</h4> | ||
+ | <span class="kyoto-author">Nakamura,Honda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th colspan=2>CompetentCells/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | <th>Medium</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD+pSB1C3</td> | ||
+ | <td>5</td> | ||
+ | <td>@</td> | ||
+ | <td>20</td> | ||
+ | <td>25</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>control</td> | ||
+ | <td>5</td> | ||
+ | <td>@</td> | ||
+ | <td>20</td> | ||
+ | <td>25</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>@</P> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0821" class="kyoto-jump"></a> | ||
+ | <h3>8/21</h3> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="kyoto-author">Honda,Nakamura</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>35</td> | ||
+ | <td>1.4</td> | ||
+ | <td>1.4</td> | ||
+ | <td>32.2</td> | ||
+ | <td>70</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94°C</td> | ||
+ | <td>94°C</td> | ||
+ | <td>55°C</td> | ||
+ | <td>68°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Number</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>8/20 dddD+pSB1C3(1)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>8/20 dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>8/20 dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>8/20 dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>8/20 dddD+pSB1C3(3)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>8/20 dddD+pSB1C3(3)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="kyoto-author">Nakamura</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Number</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>8/20 dddD+pSB1C3(1)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>8/20 dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>8/20 dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>8/20 dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>8/20 dddD+pSB1C3(3)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>8/20 dddD+pSB1C3(3)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="kyoto-author">Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>8/22 Mp(1) E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>8/22 Mp(1) E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>8/22 Mp(1) E,S</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>8/22 Mp(2) E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>8/22 Mp(2) E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>Blank</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>8/22 Mp(3) E,S</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>8/22 Mp(3) E,S</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0825" class="kyoto-jump"></a> | ||
+ | <h3>8/25</h3> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="kyoto-author">Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="kyoto-author">Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>8/22 Mp(1) E,S</td> | ||
+ | <td>1.3</td> | ||
+ | <td>8/18 dddD gel extraction product</td> | ||
+ | <td>0.81</td> | ||
+ | <td>2x Buffer</td> | ||
+ | <td>5</td> | ||
+ | <td>T4 Ligase</td> | ||
+ | <td>0.3</td> | ||
+ | <td>2.69</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/22 Mp(2) E+S</td> | ||
+ | <td>0.95</td> | ||
+ | <td>8/18 dddD gel extraction product</td> | ||
+ | <td>0.71</td> | ||
+ | <td>2x Buffer</td> | ||
+ | <td>5</td> | ||
+ | <td>T4 Ligase</td> | ||
+ | <td>0.3</td> | ||
+ | <td>3.04</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/22 Mp(3) E+S</td> | ||
+ | <td>0.69</td> | ||
+ | <td>8/18 dddD gel extraction product</td> | ||
+ | <td>0.71</td> | ||
+ | <td>2x Buffer</td> | ||
+ | <td>5</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>0.3</td> | ||
+ | <td>3.3</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <div> | ||
+ | |||
+ | <a name="0826" class="kyoto-jump"></a> | ||
+ | <h3>8/26</h3> | ||
+ | <h4>Transformation</h4> | ||
+ | <span class="kyoto-author">Nakamura,Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th colspan=2>CompetentCells/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | <th>Medium</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/25 Ligation (1)</td> | ||
+ | <td>10</td> | ||
+ | <td>@</td> | ||
+ | <td>50</td> | ||
+ | <td>60</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/25 Ligation(2)</td> | ||
+ | <td>10</td> | ||
+ | <td>@</td> | ||
+ | <td>50</td> | ||
+ | <td>60</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/25 Ligation(3)</td> | ||
+ | <td>10</td> | ||
+ | <td>@</td> | ||
+ | <td>30</td> | ||
+ | <td>40</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>@</p> | ||
+ | </div> | ||
+ | <div> | ||
+ | |||
+ | <a name="0827" class="kyoto-jump"></a> | ||
+ | <h3>8/27</h3> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>80</td> | ||
+ | <td>3.2</td> | ||
+ | <td>3.2</td> | ||
+ | <td>73.6</td> | ||
+ | <td>160</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94°C</td> | ||
+ | <td>94°C</td> | ||
+ | <td>55°C</td> | ||
+ | <td>68°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>2h20min</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Number</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>9</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>10</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>11</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>12</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>13</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>14</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>15</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>16</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="kyoto-author">Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>8/26 dddD+pSB1C3(1)-5</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>8/26 dddD+pSB1C3(2)-5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>9</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>10</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>11</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>12</td> | ||
+ | <td>8/26 dddD+pSB1C3(3)-5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>13</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>14</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <div> | ||
+ | |||
+ | <a name="0829" class="kyoto-jump"></a> | ||
+ | <h3>8/29</h3> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>25</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>95°C</td> | ||
+ | <td>98°C</td> | ||
+ | <td>65°C</td> | ||
+ | <td>72°C</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5min</td> | ||
+ | <td>20sec</td> | ||
+ | <td>15sec</td> | ||
+ | <td>50sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension @cycle</p> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/29 Pre-dddD-Suf PCR product</td> | ||
+ | <td>335</td> | ||
+ | <td>1.73</td> | ||
+ | <td>1.91</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th>EcoR1/(µL)</th> | ||
+ | <th>Xba1/(µL)</th> | ||
+ | <th>Spe1/(µL)</th> | ||
+ | <th>Pst1/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th>BSA/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/29 Pre-dddD-Suf PCR product</td> | ||
+ | <td>6.0</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>19</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/29 Pre-dddD-Suf Restriction Enzyme Digestion product</td> | ||
+ | <td>60</td> | ||
+ | <td>1.64</td> | ||
+ | <td>0.94</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3 E,S gel extraction product</td> | ||
+ | <td>4.7</td> | ||
+ | <td>dddD-pSB1C3</td> | ||
+ | <td>4</td> | ||
+ | <td>2x Buffer</td> | ||
+ | <td>9.7</td> | ||
+ | <td>T4 Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>19.4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3 E,S gel extraction product</td> | ||
+ | <td>4.7</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>2x Buffer</td> | ||
+ | <td>9.7</td> | ||
+ | <td>T4 Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>4</td> | ||
+ | <td>19.4</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th colspan=2>CompetentCells/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | <th>Medium</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD 8/29 ligation product</td> | ||
+ | <td>10</td> | ||
+ | <td>DH5a</td> | ||
+ | <td>40</td> | ||
+ | <td>50</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/29 ligation product control</td> | ||
+ | <td>10</td> | ||
+ | <td>DH5a</td> | ||
+ | <td>40</td> | ||
+ | <td>50</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>pSB1C3 control</td> | ||
+ | <td>1</td> | ||
+ | <td>DH5a</td> | ||
+ | <td>20</td> | ||
+ | <td>@</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
<!-- 警告:ここより下を消したら怒る --> | <!-- 警告:ここより下を消したら怒る --> | ||
</div> | </div> | ||
</html> | </html> |
Revision as of 21:14, 26 September 2014
7/31
Restriction Enzyme Digestion
Sample/(µL) | EcoR1/(µL) | Xba1/(µL) | Spe1/(µL) | Pst1/(µL) | Buffer/(µL) | BSA/(µL) | MilliQ/(µL) | Total/(µL) | ||
---|---|---|---|---|---|---|---|---|---|---|
3/24 dddD PCR product | 3.2 | 1 | - | 1 | - | H | 3 | - | 21.8 | 30 |
pSB1C3 | 18.5 | 1 | - | 1 | - | H | 3 | - | 6.5 | 30 |
pSB1C3 control | 6.2 | - | - | - | - | H | 1 | - | 2.8 | 10 |
8/1
Gel Extraction
Lane | Sample |
---|---|
1 | 1kbp ladder |
2 | 3/24 dddD PCR product E,S |
3 | 3/24 dddD PCR product E,S |
4 | Blank |
5 | pSB1C3 E,S |
6 | pSB1C3 E,S |
7 | Blank |
8 | 1kbp ladder |
9 | 3/24 dddD PCR product control |
10 | pSB1C3 control |
Sample | Concentration/(µg/mL) | 260/280 | 260/230 |
---|---|---|---|
PSB1C3 | 13.3 | 1.90 | - |
dddD | 10.8 | 1.64 | 0.15 |
Ligation
Vector/(µL) | Insert/(µL) | Buffer/(µL) | Ligase/(µL) | MilliQ/(µL) | Total/(µL) | ||||
---|---|---|---|---|---|---|---|---|---|
8/1 PSB1C3 gel extraction product 2047bp | 1.5 | 8/1 dddD gel extraction product 2545bp | 6.9 | 10xT4Ligase | 2 | T4Ligase | 1 | 8.6 | 20 |
Transformation
Sample/(µL) | CompetentCells/(µL) | Total/(µL) | Medium | ||
---|---|---|---|---|---|
PSB1C3-dddD | 3 | コンピ名 | 30 | 33 | SOC |
8/2
PCR Cloning
dddD without Pre-Suf | 2x KAPA HiFi Hotstart Ready Mix/(µL) | F Pre-dddD PCR product 62/(µL) | Rv Spe1-dddD PCR product 68/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|---|
pick up | 12.5 | 0.75 | 0.75 | 11 | 25 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
95°C | 98°C | 65°C | 72°C |
5min | 20sec | 15sec | 50sec |
Denature-Annealing-Extension 25cycle
DNA Purification
8/2 Pre-dddD-Suf PCR product
Colony PCR
Master Mix
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
15 | 0.6 | 0.6 | 13.8 | 30 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94°C | 94°C | 55°C | 68°C |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle
Number | Sample |
---|---|
1 | pSB1C3-dddD(1) |
2 | pSB1C3-dddD(2) |
3 | pSB1C3-dddD(3) |
Concentration Measurement
Sample | Concentration/(µg/mL) | 260/280 | 260/230 |
---|---|---|---|
dddD PCR product | 245 | 1.59 | 2.17 |
Restriction Enzyme Digestion
Sample/(µL) | EcoR1/(µL) | Xba1/(µL) | Spe1/(µL) | Pst1/(µL) | Buffer/(µL) | BSA/(µL) | MilliQ/(µL) | Total/(µL) | ||
---|---|---|---|---|---|---|---|---|---|---|
8/2 dddD PCR product | 8.2 | 1 | - | 1 | - | H | 3 | - | 16.8 | 30 |
8/2 dddD PCR product control | 0.41 | - | - | - | - | H | 1 | - | 8.6 | 10 |
pSB1C3 | 12.7 | 1 | - | 1 | - | H | 3 | - | 12.3 | 30 |
pSB1C3 control | 0.04 | - | - | - | - | H | 1 | - | 8.4 | 10 |
8/3
@
Lane | Sample |
---|---|
1 | pSB1C3-dddD(1) |
2 | pSB1C3-dddD(2) |
3 | pSB1C3-dddD(3) |
4 | 1kb ladder (3µL) |
5 | 1kb ladder (1µL) |
Gel Extraction
Lane | Sample |
---|---|
1 | 1kb ladder |
2 | Blank |
3 | pSB1C3 2070bp |
4 | Blank |
5 | pSB1C3 |
6 | Blank |
7 | 8/2 dddD PCR product 2544bp |
8 | Blank |
9 | 8/2 dddD PCR product |
Sample | Concentration/(µg/mL) | 260/280 | 260/230 |
---|---|---|---|
pSB1C3 | @ | 1.37 | 0.42 |
dddD PCR product | 35 | 1.54 | 0.85 |
8/4
Colony PCR
Master Mix
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
40 | 1.6 | 1.6 | 36.8 | 80 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94°C | 94°C | 55°C | 68°C |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle
1 | dddD+pSB1C3(1)-1 |
---|---|
2 | dddD+pSB1C3(1)-2 |
3 | dddD+pSB1C3(2)-1 |
4 | dddD+pSB1C3(2)-2 |
5 | dddD+pSB1C3(2)-3 |
6 | dddD+pSB1C3(2)-4 |
7 | pSB1C3 control-1 |
8 | control |
Electrophoresis
Lane | Sample |
---|---|
1 | 1kbp ladder |
2 | dddD+pSB1C3(1)-1 |
3 | dddD+pSB1C3(1)-2 |
4 | dddD+pSB1C3(2)-1 |
5 | dddD+pSB1C3(2)-2 |
6 | dddD+pSB1C3(2)-3 |
7 | dddD+pSB1C3(2)-4 |
8 | pSB1C3 control-1 |
9 | control |
10 | 1kbp ladder |
PCR
Unexpected bands are confirmed in former Electrophoresis, so contamination of MilliQ or Quicktaq is suspected. For confirming contamination, PCR and Electrophoresis are conducted.
* suspicious samples for contamination
(1)
*Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
5 | 0.2 | 0.2 | 4.6 | 10 |
(2)
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
5 | 0.2 | 0.2 | 4.6 | 10 |
(3)
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | *MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
5 | 0.2 | 0.2 | 4.6 | 10 |
(4)
*Quick Tag/(µL) | VF2/(µL) | VR/(µL) | *MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
5 | 0.2 | 0.2 | 4.6 | 10 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94°C | 94°C | 55°C | 68°C |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle
Electrophoresis
Lane | Sample |
---|---|
1 | 1kbp ladder |
2 | (1) |
3 | (2) |
4 | (3) |
5 | (4) |
8/18
PCR
For confirming contamination of VF2 and VR primers, we pour samples into new tubes and perform PCR and Electrophoresis.
(1)
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
5 | 0.2 | 0.2 | 4.6 | 10 |
control(2)
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | 8/2 Pcon3/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|---|
5 | 0.2 | 0.2 | 0.6 | 4.6 | 10 |
(3)
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
5 | 0.2 | 0.2 | 4.6 | 10 |
(4)
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | 8/2 Pcon3/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|---|
5 | 0.2 | 0.2 | 0.6 | 4.0 | 10 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94°C | 94°C | 55°C | 68°C |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle
Electrophoresis
Number | Sample |
---|---|
1 | 1kbp ladder |
2 | (1) |
3 | (2) |
4 | (3) |
5 | (4) |
Restriction Enzyme Digestion
Sample/(µL) | EcoR1/(µL) | Xba1/(µL) | Spe1/(µL) | Pst1/(µL) | Buffer/(µL) | BSA/(µL) | MilliQ/(µL) | Total/(µL) | ||
---|---|---|---|---|---|---|---|---|---|---|
dddD 8/2 PCR product | 5.5 | 0.7 | - | 0.7 | - | H | 2 | - | 11.1 | 20 |
dddD 8/2 PCR product control | 0.41 | - | - | - | - | H | 1 | - | 8.6 | 10 |
pSB1C3 | 12.7 | 1 | - | 1 | - | H | 3 | - | 8.4 | 10 |
pSB1C3 control | 0.64 | - | - | - | - | H | 1 | - | 8.4 | 10 |
Colony PCR
Master Mix
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
40 | 1.6 | 1.6 | 36.8 | 80 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94°C | 94°C | 55°C | 68°C |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle
Number | Sample |
---|---|
1 | dddD+pSB1C3(1)-1 |
2 | dddD+pSB1C3(1)-2 |
3 | dddD+pSB1C3(2)-1 |
4 | dddD+pSB1C3(2)-2 |
5 | dddD+pSB1C3(2)-3 |
6 | dddD+pSB1C3(2)-4 |
7 | pSB1C3 control-1 |
8 | control |
Electrophoresis
Lane | Sample |
---|---|
1 | 1kbp ladder |
2 | dddD+pSB1C3(1)-1 |
3 | dddD+pSB1C3(1)-2 |
4 | dddD+pSB1C3(2)-1 |
5 | dddD+pSB1C3(2)-2 |
6 | dddD+pSB1C3(2)-3 |
7 | dddD+pSB1C3(2)-4 |
8 | pSB1C3 control-1 |
9 | control |
Gel Extraction
Lane | Sample |
---|---|
1 | 1kbp ladder |
2 | dddD control |
3 | dddD E,S |
4 | @ |
5 | pSB1C3 control |
6 | pSB1C3 E,S |
Sample | Concentration/(µg/mL) | 260/280 | 260/230 |
---|---|---|---|
105 | 1.30 | 0.85 | |
dddD | 105 | 1.27 | 0.73 |
8/19
Ligation
(1)
Vector/(µL) | Insert/(µL) | Buffer/(µL) | Ligase/(µL) | MilliQ/(µL) | Total/(µL) | ||||
---|---|---|---|---|---|---|---|---|---|
pSB1C3 | 3.6 | dddD | 1 | 2xBuffer | 5.6 | T4Ligase | 1 | - | 11.2 |
(2)
Vector/(µL) | Insert/(µL) | Buffer/(µL) | Ligase/(µL) | MilliQ/(µL) | Total/(µL) | ||||
---|---|---|---|---|---|---|---|---|---|
pSB1C3 | 3.6 | - | - | 2xBuffer | 5.6 | T4Ligase | 1 | 1 | 11.2 |
8/20
Transformation
Sample/(µL) | CompetentCells/(µL) | Total/(µL) | Medium | ||
---|---|---|---|---|---|
8/19 Ligation (1) | 11.2 | @ | 50 | 61.2 | SOC |
8/19 Ligation (2) | 11.2 | @ | 50 | 61.2 | SOC |
Ligation
(1)
Vector/(µL) | Insert/(µL) | Buffer/(µL) | Ligase/(µL) | MilliQ/(µL) | Total/(µL) | ||||
---|---|---|---|---|---|---|---|---|---|
pSB1C3 | 10.8 | dddD | 3 | 2xBuffer | 16.8 | T4Ligase | 3 | - | 33.6 |
(2)
Vector/(µL) | Insert/(µL) | Buffer/(µL) | Ligase/(µL) | MilliQ/(µL) | Total/(µL) | ||||
---|---|---|---|---|---|---|---|---|---|
pSB1C3 | 10.8 | - | - | 2xBuffer | 16.8 | T4Ligase | 3 | 3 | 33.6 |
Transformation
Sample/(µL) | CompetentCells/(µL) | Total/(µL) | Medium | ||
---|---|---|---|---|---|
dddD+pSB1C3 | 5 | @ | 20 | 25 | SOC |
control | 5 | @ | 20 | 25 | SOC |
@
8/21
Colony PCR
Master Mix
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
35 | 1.4 | 1.4 | 32.2 | 70 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94°C | 94°C | 55°C | 68°C |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle