Team:Paris Bettencourt/Protocols
From 2014.igem.org
(Difference between revisions)
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<ul id="menu-accordeon"> | <ul id="menu-accordeon"> | ||
- | <li><a onclick="showprot('#prot1')"> | + | <li><a onclick="showprot('#prot1')">Heat Shock Transformation of <i>E. coli</i></a></li> |
- | <li><a onclick="showprot('#prot2')"> | + | <li><a onclick="showprot('#prot2')">CaCl2 Competent Cells</a></li> |
- | <li><a onclick="showprot('#prot3')"> | + | <li><a onclick="showprot('#prot3')">Electroporation</a></li> |
+ | <li><a onclick="showprot('#prot4')"> Miniprep </a></li> | ||
+ | <li><a onclick="showprot('#prot5')">PCR Purification</a></li> | ||
+ | <li><a onclick="showprot('#prot6')">Gel Purification</a></li> | ||
+ | <li><a onclick="showprot('#prot7')">Glycerol Stocks</a></li> | ||
+ | <li><a onclick="showprot('#prot8')">Colony PCR</a></li> | ||
</ul> | </ul> | ||
</div> | </div> | ||
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- | <div id="prot1" class="protocolactive"> | + | <div id="prot1" class="protocolactive"> |
+ | <h3> Heat Shock Transformation of <i>E. coli</i></h3> | ||
+ | <p>This protocol can be used to transform chemically competent (i.e. from CaCl2) with a miniprepped plasmid or a ligation product.</p> | ||
+ | <h5>Note: Never vortex competent cells. Mix cells by gentle shaking.</h5> | ||
+ | <p><ol> | ||
+ | <li>Thaw competent cells on ice. These can be prepared using the CaCl2 protocol.</li> | ||
+ | <li>Place 20 ul of cells in a pre-chilled Eppendorf tube. | ||
+ | <ul> | ||
+ | <li><u>For an Intact Vector:</u> Add 0.5 ul or less to the chilled cells</li> | ||
+ | <li><u>For a Ligation Product:</u> Add 2-3 ul to the chilled cells.</li> | ||
+ | </ul> | ||
+ | </li> | ||
+ | <li>Mix gently by flicking the tube.</li> | ||
+ | <li>Chill on ice for 10 minutes. <em>This step is optional, but can improve yields when transforming a ligation product.</em></li> | ||
+ | <li>Heat shock at 42 °C for 30 seconds.</li> | ||
+ | <li>Return to ice for 2 minutes.</li> | ||
+ | <li>Add 200 ul LB medium and recover the cells by shaking at 37 °C.<br /> | ||
+ | Another rich medium can substitute for the recovery.<br /> | ||
+ | The recovery time varies with the antibiotic selection.<br /> | ||
+ | Ampicillin: 15-30 minutes<br /> | ||
+ | Kanamycin or Spectinomycin: 30-60 minutes<br /> | ||
+ | Chloramphenicol: 60-120 minutes | ||
+ | </li> | ||
+ | <li>Plate out the cells on selective LB.<br /> | ||
+ | Use glass beads to spread the cells.<br /> | ||
+ | The volume of cells plated depends on what is being transformed.<br /> | ||
+ | <ul> | ||
+ | <li><u>For an Intact Vector:</u> High transformation efficiencies are expected. Plating out 10 ul of recovered cells should produce many colonies.</li> | ||
+ | <li><u>For a Ligation Product:</u> Lower transformation efficiencies are expected. Therefore you can plate the entire 200 ul volume of recovered cells.</li> | ||
+ | </ul> | ||
+ | Note: 200 ul is the maximum volume of liquid that an LB plate can absorb. | ||
+ | </li> | ||
+ | <li>Incubate at 37 °C. Transformants should appear within 12 hrs.</li> | ||
+ | </ol></p> | ||
+ | </div> | ||
+ | <div id="proton" class="protocol"> | ||
<h3>Titre</h3> | <h3>Titre</h3> | ||
<p>Text</p> | <p>Text</p> | ||
<h5>Note</h5> | <h5>Note</h5> | ||
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</ol> | </ol> | ||
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<div id="prot3" class="protocol"> | <div id="prot3" class="protocol"> | ||
+ | <h3>Titre</h3> | ||
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+ | <h5>Note</h5> | ||
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+ | </ol> | ||
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+ | <div id="prot4" class="protocol"> | ||
+ | <h3>Titre</h3> | ||
+ | <p>Text</p> | ||
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+ | <ol> | ||
+ | <li>Bla</li> | ||
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+ | </ol> | ||
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+ | <div id="prot5" class="protocol"> | ||
+ | <h3>Titre</h3> | ||
+ | <p>Text</p> | ||
+ | <h5>Note</h5> | ||
+ | <ol> | ||
+ | <li>Bla</li> | ||
+ | <li>BlaBla</li> | ||
+ | </ol> | ||
+ | </div> | ||
+ | <div id="prot6" class="protocol"> | ||
+ | <h3>Titre</h3> | ||
+ | <p>Text</p> | ||
+ | <h5>Note</h5> | ||
+ | <ol> | ||
+ | <li>Bla</li> | ||
+ | <li>BlaBla</li> | ||
+ | </ol> | ||
+ | </div> | ||
+ | <div id="prot7" class="protocol"> | ||
+ | <h3>Titre</h3> | ||
+ | <p>Text</p> | ||
+ | <h5>Note</h5> | ||
+ | <ol> | ||
+ | <li>Bla</li> | ||
+ | <li>BlaBla</li> | ||
+ | </ol> | ||
+ | </div> | ||
+ | <div id="prot8" class="protocol"> | ||
<h3>Titre</h3> | <h3>Titre</h3> | ||
<p>Text</p> | <p>Text</p> |
Revision as of 13:19, 19 August 2014
Heat Shock Transformation of E. coli
This protocol can be used to transform chemically competent (i.e. from CaCl2) with a miniprepped plasmid or a ligation product.
Note: Never vortex competent cells. Mix cells by gentle shaking.
- Thaw competent cells on ice. These can be prepared using the CaCl2 protocol.
- Place 20 ul of cells in a pre-chilled Eppendorf tube.
- For an Intact Vector: Add 0.5 ul or less to the chilled cells
- For a Ligation Product: Add 2-3 ul to the chilled cells.
- Mix gently by flicking the tube.
- Chill on ice for 10 minutes. This step is optional, but can improve yields when transforming a ligation product.
- Heat shock at 42 °C for 30 seconds.
- Return to ice for 2 minutes.
- Add 200 ul LB medium and recover the cells by shaking at 37 °C.
Another rich medium can substitute for the recovery.
The recovery time varies with the antibiotic selection.
Ampicillin: 15-30 minutes
Kanamycin or Spectinomycin: 30-60 minutes
Chloramphenicol: 60-120 minutes - Plate out the cells on selective LB.
Use glass beads to spread the cells.
The volume of cells plated depends on what is being transformed.
- For an Intact Vector: High transformation efficiencies are expected. Plating out 10 ul of recovered cells should produce many colonies.
- For a Ligation Product: Lower transformation efficiencies are expected. Therefore you can plate the entire 200 ul volume of recovered cells.
- Incubate at 37 °C. Transformants should appear within 12 hrs.
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