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Team:UANL Mty-Mexico/wetlab/mini project
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| + | Then, we started to prove our synthetic part (K1140006) with the set generators TetR. The results are shown in the next table. | ||
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| + | <center><table style="width:40%"> | ||
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| + | <th align="center"> Table 2. Repression over K1480002</th> | ||
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| + | <table style="width:80%"> | ||
| + | <th align="left"> </th> | ||
| + | <th align="left"> Without repressor</th> | ||
| + | <th align="left"> With K1480003</th> | ||
| + | <th align="left"> With K145201</th> | ||
| + | <th align="left"> With K1480004</th> | ||
| + | <th align="left"> With K1480005</th> | ||
| + | </tr> | ||
| + | <tr> <td> </td> <td> 2770</td> <td> 852 </td> <td>868</td> <td>731</td> <td>738 </td> </tr> | ||
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| + | <tr> <td> </td> <td> 2621 </td> <td> 827</td> <td> 766</td> <td> 780</td> <td> 673</td> </tr> | ||
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| + | <tr> <td> </td> <td> 3294 </td> <td> 866</td> <td> 1212</td> <td> 898</td> <td>655 </td> </tr> | ||
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| + | <tr> <td> </td> <td> 3492</td> <td> 946</td> <td>742 </td> <td>813 </td> <td>746 </td> </tr> | ||
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| + | <tr> <td> </td> <td> 3038 </td> <td> 725</td> <td> </td> <td>608 </td> <td> 450</td> </tr> | ||
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| + | <tr> <td> </td> <td> 2710</td> <td> 776</td> <td> 744</td> <td>827 </td> <td> 516 </td> </tr> | ||
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| + | <tr> <td> </td> <td> 1671 </td> <td> 620</td> <td>536 </td> <td> 566</td> <td> NG* </td> </tr> | ||
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| + | <tr> <td> Mean </td> <td>2799.9 </td> <td>801.9 </td> <td>868.8 </td> <td>746.6 </td> <td> 630.0 </td> </tr> | ||
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| + | <tr> <td> SD </td> <td> 590.9 </td> <td> 106.3 </td> <td> 254.7 </td> <td> 120.6 </td> <td> 121.1 </td> </tr> | ||
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Revision as of 19:31, 17 October 2014
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Introduction It is know that TetR (like others transcriptional repressors) can allow a basal expression. Because of that, it would be a good idea to reduce that basal expression using a molecular tool which does not cause noise to circuits and systems. The last year our team participated with the project “Thermo coli” (Team: UANL_Mty-Mexico). The main biobrick (K1140006) that we used was composed for the fluorescent protein mCherry (E1010) regulated by the ptet promoter (R0040) and a 37°C thermometer. This year we decided to use that biobrick part to develop a mini-project. We want to proveif it is possible to enhance the repression of a gene by a combined use of the repressor protein TetR (transcriptional regulation) and a RNA thermometer (post-transcriptional regulation). Constructions and Parts The fluorescent part was synthetized based on the promoter ptet (R0040), a RBS fused to a RNA thermometer which was obtained on a previous work (Neupertet al, 2008), the mCherry (E1010) and the transcriptional terminator T7 (B0010-B0012). 
Also, it was constructed a part that does not have a thermometer, so that we could see its effect on the fluorescence. This part was constructed using the same promoter (R0040) with the RFP/mCherry protein generator (K081014). 
We constructed TetR generatorswith different constitutive promoters. We used the promoters J23109, J23106 and J23111 with the relative force 106, 1185 and 1487, respectively.These parts have a RBS (B0034), the CDS for the TetR repressor (C0040) and the T7 transcriptional terminator (B0010-B0012). Moreover, we used the biobrick part K145201 as a positive control to expression of TetR, because it is a generator with promoter force 396. Also the RBS and transcriptional terminator are both the same. 
Measurements For the measurements, we made constructions in order to have the biobrick parts in compatible plasmids. It means that those which codifies to mCherry are in pSB2K3 and the tetR genes are in pSB1A2.
Results First, we had to prove the function of our construction ptet + mCherry (K1480002). So, it was decided to prove its fluorescence with and without repressor. That TetR generator is the one has been proved before that works (K145201). The results are shown in table 2.
Then, we started to prove our synthetic part (K1140006) with the set generators TetR. The results are shown in the next table.
References Neupert J, Karcher D and Bock R (2008) Design of simple synthetic RNA thermometers for temperature- controlled gene expression in Escherichia coli. Nucleic Acids Res36:e124.
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