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Team:TU Delft-Leiden/Modeling/CodeRepository
From 2014.igem.org
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<h3>EET Module</h3> | <h3>EET Module</h3> | ||
<h4>Flux Balance Analysis </h4> | <h4>Flux Balance Analysis </h4> | ||
| + | <p><a href="https://2014.igem.org/File:TU_Delft_2014_FBA_constructed_model.zip">FBA Constructed Model</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/f/ff/TU_Delft_2014_Comp_with_without_EET.m">Comparison with and without EET</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/0/04/TU_Delft_2014_FBA.m">FBA</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/1/11/TU_Delft_2014_FBA_Uptake_without_EET.m">FBA Uptake without EET</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/b/b9/TU_Delft_2014_Robustness_Analysis_EET.m">Robustness Analysis EET</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/5/5e/TU_Delft_2014_Robustness_Analysis_Uptake.m">Robustness Analysis Uptake</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/6/62/TU_Delft_2014_FVA.m">FVA</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/1/1f/TU_Delft_2014_Phase_Plane_Analysis.m">Phase Plane Analysis FBA</a></p> | ||
| + | <p><a href="https://static.igem.org/mediawiki/2014/d/db/TU_Delft_2014_Phase_Plane_Analysis_Min_Max.m">Phase Plane Analysis FVA</a></p> | ||
<br> | <br> | ||
Revision as of 16:49, 17 October 2014
Code Repository
On this page, links to the Matlab scripts we made for our modeling efforts are given. Right clicking the link and choosing "Save link as..." allows you to save the code to your computer.
Landmine Module
EET Module
Flux Balance Analysis
Comparison with and without EET
EET Complex Assembly
EET Pathway Assembly Solver (Simple)
EET Pathway Assembly Solver (Simple) for varying d-ALA concentration
Curli Module
The curli gene and cell level code.
Find the persistence length of a curli.
Fit the density from the cell to the colony level.
Calculate if there is percolation as function of time.
Simulate an experiment on the colony level.
