Team:Yale/Results

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<tr><td colspan="4"><h2>Modeling E. coli growth producing a toxic compound</h2>
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<h1>T7 Expression System</h1>
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We sought out to determine the optimal time to induce the E. coli in order to produce the largest quantity of antimicrobial peptides. We hypothesized that the optimal induction time would be around mid-log, when the E. coli are growing fastest and there are enough bacteria to produce a significant amount of peptide before the population levels drop. To test this theory, we created a theoretical model using MATLAB, using E. coli logistical growth combined with exponential decay (due to the antimicrobial peptide) at different induction times, as represented in the graphic below.
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<strong>The goal of this study was to improve upon the widely used T7 expression system in E. coli by significantly reducing basal levels of gene expression. </strong> Two plasmids, pZE21_A12C_T7RNAPol and pZA21_T7sfGFP are the products of this effort. The former plasmid incorporates a cis-repressing RNA element into the 5’ UTR of the gene for T7 RNA Polymerase. The second plasmid provides a multiple cloning site driven by a T7 promoter. The plasmids have different resistance markers and antibiotic resistance markers and can be transformed into one cell at the same time. The improved T7 Riboregulation System is a foundational advance in synthetic biology.
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<strong> PCR Screening Results Confirm Presence of T7 RNA Polymerase and T7 Artificial Riboregulation System </strong>
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<h1>Anti-biofouling Construct</h1>
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Expression of Construct with GFP
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Expression of Anti-biofouling Peptide
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Assessing Adhesion of Peptide
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Biofilm Assay Results
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Revision as of 06:09, 17 October 2014

Results

T7 Expression System

The goal of this study was to improve upon the widely used T7 expression system in E. coli by significantly reducing basal levels of gene expression. Two plasmids, pZE21_A12C_T7RNAPol and pZA21_T7sfGFP are the products of this effort. The former plasmid incorporates a cis-repressing RNA element into the 5’ UTR of the gene for T7 RNA Polymerase. The second plasmid provides a multiple cloning site driven by a T7 promoter. The plasmids have different resistance markers and antibiotic resistance markers and can be transformed into one cell at the same time. The improved T7 Riboregulation System is a foundational advance in synthetic biology. PCR Screening Results Confirm Presence of T7 RNA Polymerase and T7 Artificial Riboregulation System

Anti-biofouling Construct

Expression of Construct with GFP

Expression of Anti-biofouling Peptide

Assessing Adhesion of Peptide

Biofilm Assay Results

Determining Optimal Time to Induce Expression

We simulated a 24 hour period and determined the optimal time to induce the cells is around mid-log (~7.5 hours). Inducing at this time maximizes production of the peptide. The graph below shows E. coli growth with induction at different times. They follow a logistic growth model until the inducer is added and then there is an exponential decay.

Overlayed with this graph is a plot of total production of of the peptide vs. time of induction, (with induction at every 6 minutes over a 24 hour period). The highest production of peptide over the lifespan of these bacteria is represented by the peak of this plot, which corresponds to induction at mid-log, as we previously hypothesized.
The MATLAB code for our model can be found Here.

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P.O. Box 208103
New Haven, CT 06520
Phone: 203.432.3783
igem@yale.edu
natalie.ma@yale.edu (Graduate Advisor)
Copyright (c) 2014 Yale IGEM