Team:KAIT Japan/Notebook

From 2014.igem.org

(Difference between revisions)
(Creating parts of IL-10α,IL-10β)
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:<big>'''Date:8/26'''</big> PCR and Electrophoresis(Using a mutation primer.)
:<big>'''Date:8/26'''</big> PCR and Electrophoresis(Using a mutation primer.)
:<big>'''Date:8/27'''</big> First Variation introduction (with Prime STAR Max)
:<big>'''Date:8/27'''</big> First Variation introduction (with Prime STAR Max)
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:<big>'''Date:9/2'''</big>  
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:<big>'''Date:9/2'''</big> PCR
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:<big>'''Date:9/4'''</big>  
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:<big>'''Date:9/4'''</big> Transformation
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:<big>'''Date:9/5'''</big>
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:<big>'''Date:9/5'''</big>Colony PCR
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:<big>'''Date:9/7'''</big>
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:<big>'''Date:9/7'''</big>ColonyPCR
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:<big>'''Date:9/8'''</big>
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:<big>'''Date:9/8'''</big>DNA extraction and Sequence(to To confirm whether variation happened in DNA of IL-10β)
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:<big>'''Date:9/9'''</big>
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:<big>'''Date:9/9'''</big>DNA sequence
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:<big>'''Date:9/10'''</big>
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:<big>'''Date:9/10'''</big>PCR and Electtrophoresis
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:<big>'''Date:9/11'''</big>  
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:<big>'''Date:9/11'''</big>Colony PCR
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:<big>'''Date:9/12'''</big>
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:<big>'''Date:9/12'''</big>DNA extraction
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:<big>'''Date:9/13'''</big>
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:<big>'''Date:9/13'''</big>PCR and Electrophoresis
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:<big>'''Date:9/15'''</big>
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:<big>'''Date:9/15'''</big>ultrafiltration
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:<big>'''Date:9/20'''</big>
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:<big>'''Date:9/16'''</big>DNA sequence(to comfirm whether variation happened in DNA of IL-10β)
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:<big>'''Date:9/23'''</big>
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:<big>'''Date:9/20'''</big>PCR
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:<big>'''Date:9/24'''</big>
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:<big>'''Date:9/23'''</big>Colony PCR
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:<big>'''Date:9/26'''</big>
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:<big>'''Date:9/24'''</big>Electrophoresis
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:<big>'''Date:9/27'''</big>
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:<big>'''Date:9/26'''</big>ultrafiltration
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:<big>'''Date:9/29'''</big>
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:<big>'''Date:9/27'''</big>PCR and colony PCR
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:<big>'''Date:9/30'''</big>
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:<big>'''Date:9/29'''</big>Electrophoresis
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:<big>'''Date:10/1'''</big>
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:<big>'''Date:9/30'''</big> DNA Extraction
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:<big>'''Date:10/2'''</big>
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:<big>'''Date:10/1'''</big>Colony PCR and DNA extraction
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:<big>'''Date:10/3'''</big>
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:<big>'''Date:10/2'''</big>Electrophoresis
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:<big>'''Date:10/4'''</big>
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:<big>'''Date:10/3'''</big>PCR(using Prime Star MAX Premix)and Electrophoresis
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:<big>'''Date:10/5'''</big>
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:<big>'''Date:10/4'''</big>PCR(using Prime Star MAX Premix)and Electrophoresis
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:<big>'''Date:9/8'''</big> Sequence(to To confirm whether variation happened in DNA of IL-10α,IL-10β)  
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:<big>'''Date:10/5'''</big>Electrophoresis
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:<big>'''Date:9/10-10/9'''</big> Sequence preparation & Sequence
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Revision as of 09:39, 16 October 2014

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Human Practice


Notebook

We made an experiment every day. It was process at trial and error.



Creating parts of HlyA and GFP

Date:8/22 The refinement of DNA and PCR and Electrophoresis
Date:8/25 PCR and Electrophoresis and Restriction
Date:8/26 Insert gene into TAvectar and Transformation
Date:8/26 Blue white Selection and Electrophoresis(8/25 Restriction) and DNA Extraction
Date:8/27 Electrophoresed the DNA that We did refinement on August 26 to confirmed it
Date:8/28 Check the HlyA and GFP for colony PCR
Date:8/29 DNA purify the HlyA and GFP
Date:8/29 Ligation product and check for PCR
Date:9/1 Build replica the HlyA and GFP
Date:9/1 Restriction enzyme treatment the HlyA and GFP
Date:9/2 Restriction enzyme treatment the HlyA and GFP in 9/1 was NANOSEP
Date:9/3 Ligation and PCR, DNA purification the HlyA and GFP
Date:9/4 Restriction enzyme treatment the HlyA and GFP
Date:9/5 Restriction enzyme treatment the vector
Date:9/5 Ligation the vector and insert. So transformation.
Date:9/9 Check the HiyA and GFP replica.Ligation and Transformation the vector and insert DNA.
Date:9/10 Transformation in 9/9 check the colony PCR.TA cloning the HlyA+GFP.
Date:9/11 Ligation the vector and insert DNA.
Date:9/12~9/15 Transformation the Ligation product.
Date:9/16 Noticed wrong the primer.so restart from the First.
Date:9/17 PCR the DNA abstracted for iGEM kit.It was TA cloning and restriction enzyme treatment.
Date:9/18 Ligation the GFP and HlyA.
Date:9/19 Ligation the GFP+HlyA in 9/18 was Electrophoresis
Date:9/20 DNA purify and PCR
Date:9/21 PCR and DNA purify
Date:9/22 Ligation the GFP+HlyA
Date:9/23 PCR and DNA purify
Date:9/24 TA Cloning was GFP and HlyA
Date:9/26 Restriction enzyme treatment the ligation the GFP+HlyA in 9/22
Date:9/27 Check the TA cloning of GFP+HlyA
Date:9/29
Date:9/30
Date:10/1
Date:10/2
Date:10/3
Date:10/4
Date:10/5
Date:10/6




Creating parts of STAT3

Date:8/19 PCR(8/18 Miniprep) and Electrophoresis
Date:8/20~8/22 PCR(Lowered 2℃ from Tm value.) and Electrophoresis
Date:8/25 PCR and Electrophoresis(Changed to Taq HOTSTER from EX taq.)
Date:8/26 PCR and Electrophoresis(Using a mutation primer.)
Date:8/27 First Variation introduction (with Prime STAR Max)
Date:9/2 PCR and Electrophoresis
Date:9/5~9/8 PCR and Electrophoresis
Date:9/9 Sequence(to To confirm whether variation happened in DNA of STAT3 )
Date:9/10~9/12 PCR and Electrophoresis
Date:9/13~9/15 DNA purification and electrophoresis
Date:9/16~9/17 DNA purification and colony PCR(Failure)
Date:9/18 colony PCR(Failure)
Date:9/19~9/22 colony PCR and electrophoresis
Date:9/23 PCR and Electrophoresis(We found out that DNA polymerase was malfunction)
Date:9/24 PCR and Electrophoresis and DNA DNA purification
Date:9/25 PCR(to find annealing temperature)
Date:9/26~9/30 DNA purification and electrophoresis(to use DNA for the sequence)
Date:10/1 Dilution after Concentration measurement of DNA
Date:10/2 Sequence(to check mutation of DNA)/The variation was not found.
Date:10/4 PCR and electrophoresis
Date:10/5~10/7 Colony PCR and DNA purification
Date:10/8 Concentration measurement of DNA
Date:10/9 Sequence(to check mutation of DNA)/The variation was not found




Creating parts of IL-10α,IL-10β

Date:8/19 PCR(8/18 Miniprep) and Electrophoresis
Date:8/20~8/22 PCR(Lowered 2℃ from Tm value.) and Electrophoresis
Date:8/25 PCR and Electrophoresis(Changed to Taq HOTSTER from EX taq.)
Date:8/26 PCR and Electrophoresis(Using a mutation primer.)
Date:8/27 First Variation introduction (with Prime STAR Max)
Date:9/2 PCR
Date:9/4 Transformation
Date:9/5Colony PCR
Date:9/7ColonyPCR
Date:9/8DNA extraction and Sequence(to To confirm whether variation happened in DNA of IL-10β)
Date:9/9DNA sequence
Date:9/10PCR and Electtrophoresis
Date:9/11Colony PCR
Date:9/12DNA extraction
Date:9/13PCR and Electrophoresis
Date:9/15ultrafiltration
Date:9/16DNA sequence(to comfirm whether variation happened in DNA of IL-10β)
Date:9/20PCR
Date:9/23Colony PCR
Date:9/24Electrophoresis
Date:9/26ultrafiltration
Date:9/27PCR and colony PCR
Date:9/29Electrophoresis
Date:9/30 DNA Extraction
Date:10/1Colony PCR and DNA extraction
Date:10/2Electrophoresis
Date:10/3PCR(using Prime Star MAX Premix)and Electrophoresis
Date:10/4PCR(using Prime Star MAX Premix)and Electrophoresis
Date:10/5Electrophoresis



Creating parts of HRV,IL-5Ra,IL-5Rb,AraC,Arac Promoter

Date:9/16
Date:9/17
Date:9/18
Date:9/19
Date:9/20
Date:9/21
Date:9/22
Date:9/23
Date:9/24
Date:9/25
Date:9/26
Date:9/27
Date:9/28
Date:9/29
Date:9/30
Date:10/1
Date:10/2
Date:10/3
Date:10/4
Date:10/5
Date:10/6
Date:10/7
Date:10/8
Date:10/9
Date:10/10
Date:10/11
Date:10/12