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Team:Freiburg/Content/Results/Modeling
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<section id="Results-Modeling-Introduction"> | <section id="Results-Modeling-Introduction"> | ||
<h1>Introduction</h1> | <h1>Introduction</h1> | ||
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| + | <p>The AcCELLerator is based on the combination of two systems: the light-regulated gene expression and the retroviral gene delivery.</p> | ||
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</section> | </section> | ||
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<section> | <section> | ||
<h2 id="Results-Modeling-Model-MLV-Infection-Formulation">Model Formulation</h2> | <h2 id="Results-Modeling-Model-MLV-Infection-Formulation">Model Formulation</h2> | ||
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| + | <p>In our project, gene delivery was achieved by infecting the cells with recombinant murine leukemia virus (MLV). As a typical retrovirus, its life cycle has been well characterized. Usually, this process can be divided artificially into several steps, including adsorption, internalization, integration, replication, assembly and release. However, our recombinant MLVs lacked the genes which are essentially for the replication and the virus assembly. Thus only the gene of interest (GOI) could be integrated into the genome and expressed. The process from adsorption to integration can be again subdivided into seven steps, so that each step can be described with a simple mathematical model.</p> | ||
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| + | <figure> | ||
| + | <a href="https://static.igem.org/mediawiki/2014/1/18/Freiburg2014_Results_modeling_infection.jpg"> <!-- ORGINAL --> | ||
| + | <img src="https://static.igem.org/mediawiki/2014/1/18/Freiburg2014_Results_modeling_infection.jpg"> <!-- Thumbnail --> | ||
| + | </a> | ||
| + | <figcaption> | ||
| + | <p class="header">(1) The infection is initiated by the adsorption of the virions onto the cell surface, which is covered by the specific receptor mCAT1. (2) Once the virion binds with the receptor, fusion of viral and cell membrane is triggered and the viral core is internalized into the cytoplasm. (3) Using viral RNA as template, double stranded DNA is produced by reverse transcriptase. (4) The viral DNA is then transported along the microtubuli to the microtubule organizing center near the nucleus. (5) During the transcription and transport, the viral molecules could be degraded by cellular factors. (6) During cell division, the nuclear envelope dissolves and the viral DNA is imported into the nucleus. (7) Viral DNA is integrated into the chromosome by integrase. (modified from ref. 1)</p> | ||
| + | </figcaption> | ||
| + | </figure> | ||
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| + | The whole infection process was described by a set of differential equations, which was adopted from a previous work<sup>1</sup> with small modifications. | ||
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</section> | </section> | ||
Revision as of 16:10, 16 October 2014
Introduction
The AcCELLerator is based on the combination of two systems: the light-regulated gene expression and the retroviral gene delivery.
MLV Infection
Model Formulation
In our project, gene delivery was achieved by infecting the cells with recombinant murine leukemia virus (MLV). As a typical retrovirus, its life cycle has been well characterized. Usually, this process can be divided artificially into several steps, including adsorption, internalization, integration, replication, assembly and release. However, our recombinant MLVs lacked the genes which are essentially for the replication and the virus assembly. Thus only the gene of interest (GOI) could be integrated into the genome and expressed. The process from adsorption to integration can be again subdivided into seven steps, so that each step can be described with a simple mathematical model.
(1) The infection is initiated by the adsorption of the virions onto the cell surface, which is covered by the specific receptor mCAT1. (2) Once the virion binds with the receptor, fusion of viral and cell membrane is triggered and the viral core is internalized into the cytoplasm. (3) Using viral RNA as template, double stranded DNA is produced by reverse transcriptase. (4) The viral DNA is then transported along the microtubuli to the microtubule organizing center near the nucleus. (5) During the transcription and transport, the viral molecules could be degraded by cellular factors. (6) During cell division, the nuclear envelope dissolves and the viral DNA is imported into the nucleus. (7) Viral DNA is integrated into the chromosome by integrase. (modified from ref. 1)
