Team:Brasil-SP

From 2014.igem.org

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<td colspan="3"><h3 align="center">Project Description</h3>
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<p><div align="justify">Our project consists of a biological molecular device (using <i>Bacillus subtilis</i> as chassis) for detection of Cystatin C, a biomarker of chronic kidney disease. The genetic circuit being assembled is based on the outstanding project of the Imperial College of London team of iGEM 2010 (special thanks to the ex-iGEMer Christopher Hirst, who helped us a lot sending some important BioBricks). Part of our mission is also to improve the characterization of the BioBricks developed on 2010 and to validate the molecular design as a generic detection system. This flexibility of detection is based on a protease cleavage of a membrane protein who triggers the genetic circuit. Since any cleavage site could be designed, virtually any protease could be used as a signal for the detection. In our case, the disease biomarker will inhibit the action of our chosen protease (Cathepsin S) and the detection will be made indirectly and negatively - <i>i.e.</i> by the Cathepsin lack of protease activity and absense of the system output. We are on the way to assemble all the parts and properly characterize each part of our construction on time for the Jamboree.<br> To address a real world situation, we are working on the same principle and aesthetics of the well known devices for biodetection like pregnancy or HIV tests: easy-to-use microfluidic devices. The plan is to design a microchip able to store spores of the developed strains of <i>B. subtilis</i> and safely expose blood samples to our biodetection system, successfully containing the biomaterial and enabling a proper discard of the chip. <i>A priori</i>, the device output monitoring would require a fluorescence detector tool, but we also propose a naked eye output observation as a concept for future prospects.<br> Since we are working on a solution for a problem directly related to ordinary people, having a public feedback about synthetic biology is very important to analyze the social impact of our work and it help us to evaluate the biosafety and bioethical issues beyond a simple risk analysis - a sociological characterization of the values of our project. Thus, as a policy and practices approach, we will try to report public opinion of Brazil on these issues using a questionnaire to evaluate our actual scenario and, in a certain way, our own project.</div></p>
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<p><div align="justify">Our project consists of a biological molecular device for detection of early stage chronic kidney disease using Cystatin C as biomarker and <i>Bacillus subtilis</i> as chassis. The genetic circuit being assembled is based on the outstanding project of <a href="https://2010.igem.org/Team:Imperial_College_London#">iGEM 2010 Imperial College of London team </a> (special thanks to the ex-iGEMer Christopher Hirst, who helped us a lot sending some important BioBricks). Part of our mission is also to improve characterization of the BioBricks developed in 2010 and to validate the molecular design as Cystatin C detection system. This flexibility of detection is based on a protease cleavage of a membrane protein which triggers the genetic circuit. Since any cleavage site could be designed, virtually any protease could be used as a signal for the detection. In our case, the disease biomarker will inhibit the action of Cathepsin S protease and the detection will be made indirectly and negatively - <i>i.e.</i> by the Cathepsin lack of protease activity and absense of the system output. We are on the way to assemble all the parts and properly characterize each part of our construction on time for the Jamboree.<br> To address a real world situation, we are working on the same principle and aesthetics of the well known devices for biodetection like pregnancy or HIV tests: easy-to-use microfluidic devices. The plan is to design a microchip able to store spores of the developed strains of <i>B. subtilis</i> and safely expose blood samples to our biodetection system, successfully containing the biomaterial and enabling a proper discard of the chip. <i>A priori</i>, the device output monitoring would require a fluorescence detector tool, but we also propose a naked eye output observation as a concept for future prospects.<br> Since we are working on a solution for a problem directly related to ordinary people, having a public feedback about synthetic biology is very important to analyze the social impact of our work and it help us to evaluate the biosafety and bioethical issues beyond a simple risk analysis - a sociological characterization of the values of our project. Thus, as a policy and practices approach, we will try to report Brazil's public opinion on these issues using a questionnaire to evaluate our actual scenario and, in a certain way, our own project.</div></p>
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Revision as of 18:16, 27 September 2014


WELCOME TO iGEM 2014!

Your team has been approved and you are ready to start the iGEM season!
On this page you can document your project, introduce your team members, document your progress
and share your iGEM experience with the rest of the world!


Click here to edit this page!

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Project Description

Our project consists of a biological molecular device for detection of early stage chronic kidney disease using Cystatin C as biomarker and Bacillus subtilis as chassis. The genetic circuit being assembled is based on the outstanding project of iGEM 2010 Imperial College of London team (special thanks to the ex-iGEMer Christopher Hirst, who helped us a lot sending some important BioBricks). Part of our mission is also to improve characterization of the BioBricks developed in 2010 and to validate the molecular design as Cystatin C detection system. This flexibility of detection is based on a protease cleavage of a membrane protein which triggers the genetic circuit. Since any cleavage site could be designed, virtually any protease could be used as a signal for the detection. In our case, the disease biomarker will inhibit the action of Cathepsin S protease and the detection will be made indirectly and negatively - i.e. by the Cathepsin lack of protease activity and absense of the system output. We are on the way to assemble all the parts and properly characterize each part of our construction on time for the Jamboree.
To address a real world situation, we are working on the same principle and aesthetics of the well known devices for biodetection like pregnancy or HIV tests: easy-to-use microfluidic devices. The plan is to design a microchip able to store spores of the developed strains of B. subtilis and safely expose blood samples to our biodetection system, successfully containing the biomaterial and enabling a proper discard of the chip. A priori, the device output monitoring would require a fluorescence detector tool, but we also propose a naked eye output observation as a concept for future prospects.
Since we are working on a solution for a problem directly related to ordinary people, having a public feedback about synthetic biology is very important to analyze the social impact of our work and it help us to evaluate the biosafety and bioethical issues beyond a simple risk analysis - a sociological characterization of the values of our project. Thus, as a policy and practices approach, we will try to report Brazil's public opinion on these issues using a questionnaire to evaluate our actual scenario and, in a certain way, our own project.

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We are currently working on providing teams with some easy to use design templates.
In the meantime you can also view other team wikis for inspiration! Here are some very good examples

For a full wiki list, you can visit iGEM 2013 web sites and iGEM 2012 web sites lists.

This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started:

  • State your accomplishments! Tell people what you have achieved from the start.
  • Be clear about what you are doing and what you plan to do.
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  • Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the iGEM 2013 calendar
  • Have lots of fun!

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