Template:Kyoto/Notebook/DMS
From 2014.igem.org
(Difference between revisions)
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+ | <div> | ||
+ | |||
+ | <a name="0731" class="kyoto-jump"></a> | ||
+ | <h3>7/31</h3> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="kyoto-author">Nakamura and Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th>EcoR1/(µL)</th> | ||
+ | <th>Xba1/(µL)</th> | ||
+ | <th>Spe1/(µL)</th> | ||
+ | <th>Pst1/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th>BSA/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3/24 PCR(dddD) cloning product</td> | ||
+ | <td>3.2</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>21.8</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7/18 RBS30@</td> | ||
+ | <td>18.5</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>6.5</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7/18 RBS30 control@</td> | ||
+ | <td>6.2</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>2.8</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0801" class="kyoto-jump"></a> | ||
+ | <h3>8/1</h3> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="kyoto-author">Murata and Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | <td>2</td> | ||
+ | <td>3/24 PCR(dddD) cloning product E,S</td> | ||
+ | <td>3</td> | ||
+ | <td>3/24 PCR(dddD) cloning product E,S</td> | ||
+ | <td>4</td> | ||
+ | <td>Blank</td> | ||
+ | <td>5</td> | ||
+ | <td>7/18 RBS30 E,S@</td> | ||
+ | <td>6</td> | ||
+ | <td>7/18 RBS30 E,S@</td> | ||
+ | <td>7</td> | ||
+ | <td>Blank</td> | ||
+ | <td>8</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | <td>9</td> | ||
+ | <td>3/24 PCR(dddD) cloning product control</td> | ||
+ | <td>10</td> | ||
+ | <td>7/18 RBS30 control@</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PSB1C3</td> | ||
+ | <td>13.3</td> | ||
+ | <td>1.90</td> | ||
+ | <td>-</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>dddD</td> | ||
+ | <td>10.8</td> | ||
+ | <td>1.64</td> | ||
+ | <td>0.15</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="kyoto-author">Yasuda</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>8/1 PSB1C3 gel extraction product 2047bp</td> | ||
+ | <td>1.5</td> | ||
+ | <td>8/1 dddD gel extraction product 2545bp</td> | ||
+ | <td>6.9</td> | ||
+ | <td>10xT4Ligase</td> | ||
+ | <td>2</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>8.6</td> | ||
+ | <td>20</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th colspan=2>CompetentCells/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | <th>Medium</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PSB1C3-dddD</td> | ||
+ | <td>3</td> | ||
+ | <td>コンピ名</td> | ||
+ | <td>30</td> | ||
+ | <td>33</td> | ||
+ | <td>SOC</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0802" class="kyoto-jump"></a> | ||
+ | <h3>8/2</h3> | ||
+ | |||
+ | <h4>PCR Cloning</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>@</th> | ||
+ | <th>2x KAPA HiFi Hotstart Ready Mix/(µL)</th> | ||
+ | <th>F Pre-dddD cloning 62/(µL)</th> | ||
+ | <th>Rv Spe1-dddD cloning 68/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>12.5</td> | ||
+ | <td>0.75</td> | ||
+ | <td>0.75</td> | ||
+ | <td>11</td> | ||
+ | <td>25</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>95@</td> | ||
+ | <td>98@</td> | ||
+ | <td>65@</td> | ||
+ | <td>72@</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5min</td> | ||
+ | <td>20sec</td> | ||
+ | <td>15sec</td> | ||
+ | <td>50sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 25cycle</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Number</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>pSB1C3-dddD(1)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>pSB1C3-dddD(2)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>pSB1C3-dddD(3)</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <p>@</p> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="kyoto-author">Honda,Nakamura and Matsumoto</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>15</td> | ||
+ | <td>0.6</td> | ||
+ | <td>0.6</td> | ||
+ | <td>13.8</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94@</td> | ||
+ | <td>94@</td> | ||
+ | <td>55@</td> | ||
+ | <td>68@</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <p>☆</p> | ||
+ | |||
+ | <h4>Concentration Measurement</h4> | ||
+ | <span class="kyoto-author">Nakamura and Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>245</td> | ||
+ | <td>1.59</td> | ||
+ | <td>2.17</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="kyoto-author">名前</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th>EcoR1/(µL)</th> | ||
+ | <th>Xba1/(µL)</th> | ||
+ | <th>Spe1/(µL)</th> | ||
+ | <th>Pst1/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th>BSA/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/2 dddD cloning product@</td> | ||
+ | <td>8.2</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>16.8</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/2 dddD cloning control@</td> | ||
+ | <td>0.41</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>8.6</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7/18 RBS30@</td> | ||
+ | <td>12.7</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>3</td> | ||
+ | <td>-</td> | ||
+ | <td>12.3</td> | ||
+ | <td>30</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7/18 RBS30 control@</td> | ||
+ | <td>0.04</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>-</td> | ||
+ | <td>H</td> | ||
+ | <td>1</td> | ||
+ | <td>-</td> | ||
+ | <td>8.4</td> | ||
+ | <td>10</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0803" class="kyoto-jump"></a> | ||
+ | <h3>8/3</h3> | ||
+ | |||
+ | <h4>@</h4> | ||
+ | <span class="kyoto-author">Murata</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>pSB1C3-dddD(1)</td> | ||
+ | <td>2</td> | ||
+ | <td>pSB1C3-dddD(2)</td> | ||
+ | <td>3</td> | ||
+ | <td>pSB1C3-dddD(3)</td> | ||
+ | <td>4</td> | ||
+ | <td>1kb ladder (3µL)</td> | ||
+ | <td>5</td> | ||
+ | <td>1kb ladder (1µL)</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>@</h4> | ||
+ | <span class="kyoto-author">Tatsui</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kb ladder</td> | ||
+ | <td>2</td> | ||
+ | <td>Blank</td> | ||
+ | <td>3</td> | ||
+ | <td>7/18 RBA30@(pSB1C3) 2070bp</td> | ||
+ | <td>4</td> | ||
+ | <td>Blank</td> | ||
+ | <td>5</td> | ||
+ | <td>7/18 RBA30@(pSB1C3)</td> | ||
+ | <td>6</td> | ||
+ | <td>Blank</td> | ||
+ | <td>7</td> | ||
+ | <td>8/2 cloning dddD 2544bp</td> | ||
+ | <td>8</td> | ||
+ | <td>Blank</td> | ||
+ | <td>9</td> | ||
+ | <td>8/2 cloning dddD</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Sample</th> | ||
+ | <th>Concentration/(µg/mL)</th> | ||
+ | <th>260/280</th> | ||
+ | <th>260/230</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7/18 RBS30(pSB1C3)@</td> | ||
+ | <td>@</td> | ||
+ | <td>1.37</td> | ||
+ | <td>0.42</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8/2 cloning dddD</td> | ||
+ | <td>35</td> | ||
+ | <td>1.54</td> | ||
+ | <td>0.85</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="kyoto-author">@</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Vector/(µL)</th> | ||
+ | <th colspan=2>Insert/(µL)</th> | ||
+ | <th colspan=2>Buffer/(µL)</th> | ||
+ | <th colspan=2>Ligase/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>7</td> | ||
+ | <td>@</td> | ||
+ | <td>7</td> | ||
+ | <td>2xBuffer</td> | ||
+ | <td>15</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>7</td> | ||
+ | <td>@</td> | ||
+ | <td>14</td> | ||
+ | <td>2xBuffer</td> | ||
+ | <td>22</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>7</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>2xBuffer</td> | ||
+ | <td>15</td> | ||
+ | <td>T4Ligase</td> | ||
+ | <td>1</td> | ||
+ | <td>7</td> | ||
+ | <td>@</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>Transformation</h4> | ||
+ | <span class="kyoto-author">@</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=2>Sample/(µL)</th> | ||
+ | <th colspan=2>CompetentCells/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | <th>Medium</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | <td>@</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | |||
+ | <a name="0804" class="kyoto-jump"></a> | ||
+ | <h3>8/4</h3> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="kyoto-author">Honda</span> | ||
+ | <p>Master Mix</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Quick Tag/(µL)</th> | ||
+ | <th>VF2/(µL)</th> | ||
+ | <th>VR/(µL)</th> | ||
+ | <th>MilliQ/(µL)</th> | ||
+ | <th>Total/(µL)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>40</td> | ||
+ | <td>1.6</td> | ||
+ | <td>1.6</td> | ||
+ | <td>36.8</td> | ||
+ | <td>80</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Predenature</th> | ||
+ | <th>Denature</th> | ||
+ | <th>Annealing</th> | ||
+ | <th>Extension</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>94@</td> | ||
+ | <td>94@</td> | ||
+ | <td>55@</td> | ||
+ | <td>68@</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2min</td> | ||
+ | <td>30sec</td> | ||
+ | <td>30sec</td> | ||
+ | <td>24sec</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>Denature-Annealing-Extension 30cycle</p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>1</th> | ||
+ | <th>dddD+pSB1C3(1)-1</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>dddD+pSB1C3(1)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3</td> | ||
+ | <td>dddD+pSB1C3(2)-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>4</td> | ||
+ | <td>dddD+pSB1C3(2)-2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>5</td> | ||
+ | <td>dddD+pSB1C3(2)-3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>dddD+pSB1C3(2)-4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>7</td> | ||
+ | <td>pSB1C3 control-1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>8</td> | ||
+ | <td>control</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <h4>@</h4> | ||
+ | <span class="kyoto-author">Matsumoto</span> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>Lane</th> | ||
+ | <th>Sample</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>1</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | <td>2</td> | ||
+ | <td>dddD+pSB1C3(1)-1</td> | ||
+ | <td>3</td> | ||
+ | <td>dddD+pSB1C3(1)-2</td> | ||
+ | <td>4</td> | ||
+ | <td>dddD+pSB1C3(2)-1</td> | ||
+ | <td>5</td> | ||
+ | <td>dddD+pSB1C3(2)-2</td> | ||
+ | <td>6</td> | ||
+ | <td>dddD+pSB1C3(2)-3</td> | ||
+ | <td>7</td> | ||
+ | <td>dddD+pSB1C3(2)-4</td> | ||
+ | <td>8</td> | ||
+ | <td>pSB1C3 control-1</td> | ||
+ | <td>9</td> | ||
+ | <td>control</td> | ||
+ | <td>10</td> | ||
+ | <td>1kbp ladder</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
<!-- 警告:ここより下を消したら怒る --> | <!-- 警告:ここより下を消したら怒る --> | ||
</div> | </div> | ||
</html> | </html> |
Revision as of 19:14, 23 September 2014
7/31
Restriction Enzyme Digestion
Sample/(µL) | EcoR1/(µL) | Xba1/(µL) | Spe1/(µL) | Pst1/(µL) | Buffer/(µL) | BSA/(µL) | MilliQ/(µL) | Total/(µL) | ||
---|---|---|---|---|---|---|---|---|---|---|
3/24 PCR(dddD) cloning product | 3.2 | 1 | - | 1 | - | H | 3 | - | 21.8 | 30 |
7/18 RBS30@ | 18.5 | 1 | - | 1 | - | H | 3 | - | 6.5 | 30 |
7/18 RBS30 control@ | 6.2 | - | - | - | - | H | 1 | - | 2.8 | 10 |
8/1
Gel Extraction
Lane | Sample | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 1kbp ladder | 2 | 3/24 PCR(dddD) cloning product E,S | 3 | 3/24 PCR(dddD) cloning product E,S | 4 | Blank | 5 | 7/18 RBS30 E,S@ | 6 | 7/18 RBS30 E,S@ | 7 | Blank | 8 | 1kbp ladder | 9 | 3/24 PCR(dddD) cloning product control | 10 | 7/18 RBS30 control@ |
Sample | Concentration/(µg/mL) | 260/280 | 260/230 |
---|---|---|---|
PSB1C3 | 13.3 | 1.90 | - |
dddD | 10.8 | 1.64 | 0.15 |
Ligation
Vector/(µL) | Insert/(µL) | Buffer/(µL) | Ligase/(µL) | MilliQ/(µL) | Total/(µL) | ||||
---|---|---|---|---|---|---|---|---|---|
8/1 PSB1C3 gel extraction product 2047bp | 1.5 | 8/1 dddD gel extraction product 2545bp | 6.9 | 10xT4Ligase | 2 | T4Ligase | 1 | 8.6 | 20 |
Transformation
Sample/(µL) | CompetentCells/(µL) | Total/(µL) | Medium | ||
---|---|---|---|---|---|
PSB1C3-dddD | 3 | コンピ名 | 30 | 33 | SOC |
8/2
PCR Cloning
@ | 2x KAPA HiFi Hotstart Ready Mix/(µL) | F Pre-dddD cloning 62/(µL) | Rv Spe1-dddD cloning 68/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|---|
@ | 12.5 | 0.75 | 0.75 | 11 | 25 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
95@ | 98@ | 65@ | 72@ |
5min | 20sec | 15sec | 50sec |
Denature-Annealing-Extension 25cycle
Number | Sample |
---|---|
1 | pSB1C3-dddD(1) |
2 | pSB1C3-dddD(2) |
3 | pSB1C3-dddD(3) |
DNA Purification
@
Colony PCR
Master Mix
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
15 | 0.6 | 0.6 | 13.8 | 30 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94@ | 94@ | 55@ | 68@ |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle
☆
Concentration Measurement
Sample | Concentration/(µg/mL) | 260/280 | 260/230 |
---|---|---|---|
@ | 245 | 1.59 | 2.17 |
Restriction Enzyme Digestion
Sample/(µL) | EcoR1/(µL) | Xba1/(µL) | Spe1/(µL) | Pst1/(µL) | Buffer/(µL) | BSA/(µL) | MilliQ/(µL) | Total/(µL) | ||
---|---|---|---|---|---|---|---|---|---|---|
8/2 dddD cloning product@ | 8.2 | 1 | - | 1 | - | H | 3 | - | 16.8 | 30 |
8/2 dddD cloning control@ | 0.41 | - | - | - | - | H | 1 | - | 8.6 | 10 |
7/18 RBS30@ | 12.7 | 1 | - | 1 | - | H | 3 | - | 12.3 | 30 |
7/18 RBS30 control@ | 0.04 | - | - | - | - | H | 1 | - | 8.4 | 10 |
8/3
@
Lane | Sample | ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | pSB1C3-dddD(1) | 2 | pSB1C3-dddD(2) | 3 | pSB1C3-dddD(3) | 4 | 1kb ladder (3µL) | 5 | 1kb ladder (1µL) |
@
Lane | Sample | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 1kb ladder | 2 | Blank | 3 | 7/18 RBA30@(pSB1C3) 2070bp | 4 | Blank | 5 | 7/18 RBA30@(pSB1C3) | 6 | Blank | 7 | 8/2 cloning dddD 2544bp | 8 | Blank | 9 | 8/2 cloning dddD |
Sample | Concentration/(µg/mL) | 260/280 | 260/230 |
---|---|---|---|
7/18 RBS30(pSB1C3)@ | @ | 1.37 | 0.42 |
8/2 cloning dddD | 35 | 1.54 | 0.85 |
Ligation
Vector/(µL) | Insert/(µL) | Buffer/(µL) | Ligase/(µL) | MilliQ/(µL) | Total/(µL) | ||||
---|---|---|---|---|---|---|---|---|---|
@ | 7 | @ | 7 | 2xBuffer | 15 | T4Ligase | 1 | @ | @ |
@ | 7 | @ | 14 | 2xBuffer | 22 | T4Ligase | 1 | @ | @ |
@ | 7 | @ | @ | 2xBuffer | 15 | T4Ligase | 1 | 7 | @ |
Transformation
Sample/(µL) | CompetentCells/(µL) | Total/(µL) | Medium | ||
---|---|---|---|---|---|
@ | @ | @ | @ | @ | @ |
8/4
Colony PCR
Master Mix
Quick Tag/(µL) | VF2/(µL) | VR/(µL) | MilliQ/(µL) | Total/(µL) |
---|---|---|---|---|
40 | 1.6 | 1.6 | 36.8 | 80 |
Predenature | Denature | Annealing | Extension |
---|---|---|---|
94@ | 94@ | 55@ | 68@ |
2min | 30sec | 30sec | 24sec |
Denature-Annealing-Extension 30cycle
1 | dddD+pSB1C3(1)-1 |
---|---|
2 | dddD+pSB1C3(1)-2 |
3 | dddD+pSB1C3(2)-1 |
4 | dddD+pSB1C3(2)-2 |
5 | dddD+pSB1C3(2)-3 |
6 | dddD+pSB1C3(2)-4 |
7 | pSB1C3 control-1 |
8 | control |
@
Lane | Sample | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 1kbp ladder | 2 | dddD+pSB1C3(1)-1 | 3 | dddD+pSB1C3(1)-2 | 4 | dddD+pSB1C3(2)-1 | 5 | dddD+pSB1C3(2)-2 | 6 | dddD+pSB1C3(2)-3 | 7 | dddD+pSB1C3(2)-4 | 8 | pSB1C3 control-1 | 9 | control | 10 | 1kbp ladder |