Team:UChicago/Fluctuation Analysis
From 2014.igem.org
(Difference between revisions)
(19 intermediate revisions not shown) | |||
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} | } | ||
- | + | table { | |
- | + | width: 100%; | |
+ | } | ||
+ | |||
+ | table, th, td { | ||
+ | border-collapse: collapse; | ||
+ | border: 1px solid black; | ||
} | } | ||
Line 17: | Line 22: | ||
<div id="maincontent"> | <div id="maincontent"> | ||
- | <input type="text" id="text" style="width: 150px;"> | + | <input type="text" id="text" style="width: 150px;"/> |
<br/> | <br/> | ||
- | <input type="button" value="Click Me" id="button"> | + | <input type="button" value="Click Me" id="button"/> |
<br/> | <br/> | ||
<h2>Small FALCOR-like program for mutational analysis</h2> | <h2>Small FALCOR-like program for mutational analysis</h2> | ||
+ | <input type="checkbox" id="debugb"><label for="debugb">Debug mode</label></input> | ||
+ | <button type="button">Add sample data</button> | ||
<div id="inputs"> | <div id="inputs"> | ||
<h4>Mutants</h4> | <h4>Mutants</h4> | ||
- | <textarea id="mutin" | + | <textarea id="mutin" placeholder="Paste data here"></textarea> |
<h4>Viable Cells</h4> | <h4>Viable Cells</h4> | ||
- | <textarea id="tcellsin" | + | <textarea id="tcellsin" placeholder="Paste data here"></textarea> |
+ | <button id="calcb" type="button">Calculate</button> | ||
</div> | </div> | ||
+ | <div id="results"> | ||
<h3>Results</h3> | <h3>Results</h3> | ||
- | < | + | <table> |
- | < | + | <tr> |
- | < | + | <th>Mean Mutational Events</th> |
- | < | + | <th>95% CI</th> |
- | </ | + | <th>Mutation Rate</th> |
+ | <th>95% CI</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td id="mmutev">1.4</td> | ||
+ | <td id="mutevci">.1</td> | ||
+ | <td id="mutrate">10<sup>-3</sup></td> | ||
+ | <td id="mutrateci">10<sup>-4</sup></td> | ||
+ | </tr> | ||
+ | </table> | ||
</div> | </div> | ||
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text.val(text.val() + ' after clicking'); | text.val(text.val() + ' after clicking'); | ||
}); | }); | ||
+ | }); | ||
+ | $(document).ready(function() { | ||
+ | $('#calcb').click(function() { | ||
+ | var mutcounts = $.map($('#mutin').val().split(), parseInt); | ||
+ | if (mutcounts.some(isNaN)) { | ||
+ | alert('invalid value of mutant amount given'); | ||
+ | return; | ||
+ | } | ||
+ | var viablescounts = $.map($('#tcellsin').val().split(),parseInt); | ||
+ | if (viablescounts.some(isNaN)) { | ||
+ | alert('invalid value of number of viable cells'); | ||
+ | return; | ||
+ | } | ||
+ | if (mutcounts.length < 1 || viablescounts.length < 1) { | ||
+ | alert('must have at least one data member in each input'); | ||
+ | return; | ||
+ | } | ||
+ | if (mutcounts.length != viablescounts.length) { | ||
+ | alert('must have same number of data items in all inputs'); | ||
+ | return; | ||
+ | } | ||
+ | var tmutplates = 0; | ||
+ | for (var i = 0; i < mutcounts.length; i++) { | ||
+ | if (mutcounts[i] > 0) tmutplates++; | ||
+ | } | ||
+ | var hitspercell = Math.log(mutcounts.length / tmutplates); | ||
+ | var mutrate = hitspercell / viablescounts[0]; | ||
+ | $('#mutrate').html(mutrate.toString()); | ||
+ | }); | ||
}); | }); | ||
</script> | </script> |
Latest revision as of 02:52, 26 August 2014
Small FALCOR-like program for mutational analysis
Mutants
Viable Cells
Results
Mean Mutational Events | 95% CI | Mutation Rate | 95% CI |
---|---|---|---|
1.4 | .1 | 10-3 | 10-4 |