Team:UT-Dallas/Notebook/8-20

From 2014.igem.org

(Difference between revisions)
 
(3 intermediate revisions not shown)
Line 1: Line 1:
{{CSS/Main}}
{{CSS/Main}}
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" dir="ltr">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" dir="ltr">
 +
<!--navigation menu -->
 +
<table align="center">
 +
<td align="center" colspan="12">
 +
 +
<table  width="100%">
 +
<tr height="15px"></tr>
 +
<tr height="75px">
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none; " align="center" height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0> 
 +
<a href="https://2014.igem.org/Team:UT-Dallas"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;" >Home </a> </td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center" height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0>
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Team"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Team </a> </td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center"  height ="45px"  onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0>
 +
<a href="https://igem.org/Team.cgi?year=2014&team_name=UT-Dallas"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Official Profile </a></td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center"  height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0> 
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Project"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Project</a></td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center"  height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0>
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Parts"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Parts</a></td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center" height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0>
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Modeling"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Modeling</a></td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center" height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0> 
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Notebook"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Notebook</a></td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center"  height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0>
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Safety"style=" color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Safety </a></td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center"  height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0>
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Attributions"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Attributions </a></td>
 +
 +
<td style="display: inline; padding: 15px; text-decoration: none;" align="center"  height ="45px" onMouseOver="this.bgColor='#4E817B'" onMouseOut="this.bgColor='#70B9B0'" bgColor=#70B9B0>
 +
<a href="https://2014.igem.org/Team:UT-Dallas/Human-Practices"style="color:#ffffff; text-decoration: none; text-transform: uppercase; font-weight: bold;"> Human Practices</a></td>
 +
 +
 +
<td style="display: inline; padding: 5px;" align ="center"> <a href="https://2014.igem.org/Team:UT-Dallas"> <img src="https://static.igem.org/mediawiki/2014/e/e1/UTDmodifiedlogo.jpg" height="45px"></a></td>
 +
<td style="display: inline; padding: 5px;" align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
 +
 +
</tr>
 +
</table>
 +
</tr>
 +
 +
 +
</tr>
 +
 +
 +
</td>
 +
 +
<tr> <td colspan="3"  height="15px"> </td></tr>
 +
<tr><td bgColor="#e7e7e7" colspan="3" height="1px"> </tr>
 +
<tr> <td colspan="3"  height="5px"> </td></tr>
 +
</table>
 +
 +
<!------end nav-->
<h1 class="firstHeading" align="center">Wednesday, August 20, 2014</h1>
<h1 class="firstHeading" align="center">Wednesday, August 20, 2014</h1>
Line 18: Line 76:
<p class="tab"> Today is a medium day. Yesterday, we inoculated the rest of the colonies on the plates. Also inoculated third batch of reporter vectors on Carb. So today we have tons (14) to miniprep and test digest. Yesterday transformation of third batch reporter vectors with promoter-Chlora was good: many colonies but about 3 colonies appeared on the negative. We inoculated 2 colonies from each plates.</p>
<p class="tab"> Today is a medium day. Yesterday, we inoculated the rest of the colonies on the plates. Also inoculated third batch of reporter vectors on Carb. So today we have tons (14) to miniprep and test digest. Yesterday transformation of third batch reporter vectors with promoter-Chlora was good: many colonies but about 3 colonies appeared on the negative. We inoculated 2 colonies from each plates.</p>
-
<p class="tab"> <b>Forth batch (B4)</b>: We are ligating and transforming forth batch reporters on promoter-Chlora. We ran out of toxT gRNA so we are inoculating some more. We are remaking some gRNA from the primers.</p>
+
<p class="tab"> <b>Fourth batch (B4)</b>: We are ligating and transforming the fourth batch reporters on promoter-Chlora. We ran out of toxT gRNA so we are inoculating some more. We are remaking some gRNA from the primers.</p>
-
<p class="tab"> Tomorrow: we should have colonies of B4 reporters on the plates we are transforming today.</p>
+
<p class="tab"> Tomorrow: we should have colonies of Batch number four reporters on the plates we are transforming today.</p>
    
    
  </td>
  </td>
Line 39: Line 97:
       <hr width="100%" align="center">
       <hr width="100%" align="center">
<UL>
<UL>
-
<LI> Glycerol Stock + Miniprep + Test Digest: reporters on Carb (B2 + ctxA + ctxB)
+
<LI> Glycerol Stock + Miniprep + Test Digest: reporters on Carb (tcpC(1),tcpC(2),tcpD(1),tcpD(2),tcpH(1),tcpH(2),toT(1),toxT(2),ctxA(1),ctxA(2),ctxA(3),tcpA(1),tcpA(2) + ctxB)
-
<LI> Inoculate B3 Reporters + Promoter (Chlora)
+
<LI> Inoculate Batch nubmer three Reporters + Promoter (Chlora)
<LI> Inoculate toxT gRNA.
<LI> Inoculate toxT gRNA.
-
<LI> Ligate, Transform B4 Reporters + Promoter (Chlora)
+
<LI> Ligate, Transform Batch number four Reporters + Promoter (Chlora)
<LI> Anneal gRNA primers tcpF, acfA, acfB, Gel purify, Over-Night Ligation
<LI> Anneal gRNA primers tcpF, acfA, acfB, Gel purify, Over-Night Ligation
</UL>
</UL>
       </td>
       </td>
<td>
<td>
-
<img class="pic" src="http://i.imgur.com/ExLJr9Z.jpg" width="400px" align="right"/>
+
<img class="pic" src="https://static.igem.org/mediawiki/2014/thumb/4/41/UTDallasAugust20i1.jpg/800px-UTDallasAugust20i1.jpg" width="400px" align="right"/>
 +
Today's Task
</tr>
</tr>
   </tbody>
   </tbody>
Line 57: Line 116:
  <hr width="100%" align="center">
  <hr width="100%" align="center">
   <p>
   <p>
-
       <img src="http://i.imgur.com/qUoKjFS.jpg" height="400px">
+
       <img src="https://static.igem.org/mediawiki/2014/thumb/5/5e/UTDallasAugust20i2.jpg/800px-UTDallasAugust20i2.jpg" height="400px">
       <br> Gel for annealed primers and gel purify later: tcpF, acfA, acfB.  
       <br> Gel for annealed primers and gel purify later: tcpF, acfA, acfB.  
       <div class="gallerylayer" opacity: 1; background: white;">
       <div class="gallerylayer" opacity: 1; background: white;">
-
       <img src="http://i.imgur.com/FRDboIE.jpg" style="border-width: 0px; display: inline; margin-left: 0px; margin-top: 0px;" height="400px">
+
       <img src="https://static.igem.org/mediawiki/2014/thumb/b/b3/UTDallasAugust20i3.jpg/800px-UTDallasAugust20i3.jpg" style="border-width: 0px; display: inline; margin-left: 0px; margin-top: 0px;" height="400px">
       <br> Test digest. Doesn't look really good.
       <br> Test digest. Doesn't look really good.
      
      

Latest revision as of 13:22, 17 October 2014

Home Team Official Profile Project Parts Modeling Notebook Safety Attributions Human Practices

Wednesday, August 20, 2014

Click here to edit the page

Today is a medium day. Yesterday, we inoculated the rest of the colonies on the plates. Also inoculated third batch of reporter vectors on Carb. So today we have tons (14) to miniprep and test digest. Yesterday transformation of third batch reporter vectors with promoter-Chlora was good: many colonies but about 3 colonies appeared on the negative. We inoculated 2 colonies from each plates.

Fourth batch (B4): We are ligating and transforming the fourth batch reporters on promoter-Chlora. We ran out of toxT gRNA so we are inoculating some more. We are remaking some gRNA from the primers.

Tomorrow: we should have colonies of Batch number four reporters on the plates we are transforming today.
Today's tasks:
  • Glycerol Stock + Miniprep + Test Digest: reporters on Carb (tcpC(1),tcpC(2),tcpD(1),tcpD(2),tcpH(1),tcpH(2),toT(1),toxT(2),ctxA(1),ctxA(2),ctxA(3),tcpA(1),tcpA(2) + ctxB)
  • Inoculate Batch nubmer three Reporters + Promoter (Chlora)
  • Inoculate toxT gRNA.
  • Ligate, Transform Batch number four Reporters + Promoter (Chlora)
  • Anneal gRNA primers tcpF, acfA, acfB, Gel purify, Over-Night Ligation
Today's Task


Gel for annealed primers and gel purify later: tcpF, acfA, acfB.


Test digest. Doesn't look really good.

Retrieved from "http://2014.igem.org/Team:UT-Dallas/Notebook/8-20"