Team:UC-Santa Cruz-BioE

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<h1 >WELCOME TO iGEM 2014! </h1>
 
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<p>Your team has been approved and you are ready to start the iGEM season!
 
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<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
 
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<br>
 
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<!..Code to edit the page. Don't Erase!..>
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<p><a href="https://2014.igem.org/wiki/index.php?title=Team:UC-Santa_Cruz-BioE&action=edit"style="color:#FFFFFF; position:absolute; left:400px; top:62px; z-index:1; "> Click here  to edit this page!</a></p>
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<a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE"style="color:#000000">Home </a> </td>
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<img src="https://static.igem.org/mediawiki/2014/d/d4/Leftborder.png" id="Shape1" alt="" style="border-width:0;width:176px;height:1205px;"></div>
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<a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Team"style="color:#000000"> Team </a> </td>
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<div id="wb_TextArt1" style="position:absolute;left:396px;top:231px;width:418px;height:61px;z-index:7;">
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<a href="https://igem.org/Team.cgi?year=2014&team_name=UC-Santa_Cruz-BioE"style="color:#000000"> Official Team Profile </a></td>
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<a href=""><img class="hover" src="https://static.igem.org/mediawiki/2014/0/05/UcsantacruzbioEWelcome.png" alt="home" title="home" style="border-width:0;width:418px;height:61px;"><span><img src="https://static.igem.org/mediawiki/2014/0/05/UcsantacruzbioEWelcome.png" id="TextArt1" alt="home" title="home" style="border-width:0;width:418px;height:61px;"></span></a></div>
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<a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Project"style="color:#000000"> Project</a></td>
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<a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Parts"style="color:#000000"> Parts</a></td>
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<span style="color:#191970;font-family:Arial;font-size:16px;"><h1>A Little Introduction...</h1><!..A HEADING!..></span></div>
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<a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Modeling"style="color:#000000"> Modeling</a></td>
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<a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Notebook"style="color:#000000"> Notebook</a></td>
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<a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Attributions"style="color:#000000"> Attributions </a></td>
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<p> Please be sure to keep these links, your audience will want to find your: </p>
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<ul>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE">Home</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Team">Team</a> </li>
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<li><a href="https://igem.org/Team.cgi?year=2013&team_name=UC-Santa_Cruz-BioE">Official Team Profile</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Project">Project</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Parts">Parts</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Modeling">Modeling</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Notebook">Notebook</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Safety">Safety</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Attributions">Attributions</a> </li>
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<div  id="paragraph1" style=" position: absolute; left:243px; top:474px; width:400px; height: 200px;text-align=left;">
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<div class="edges";>
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<h3>What is a microbial fuel cell?</h3>
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<p>Microbial fuel cells (MFCs) generate electricity via the anaerobic metabolism of certain types of bacteria. Such electrogenic organisms are able to transfer electrons during the metabolism of organic material. Naturally, it follows that, with a little bit of design, these bacteria can be used to generate a current in a fuel cell.  There is definite possibility that MFCs could be used extensively as a means to collect energy from waste water.  Therefore, we have set out to create our own MFC, in a project where life and electronics aggregate together.</p>
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<h3>On Our Bacteria of Choice</h3>
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</div>
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<div class="edges";>
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<p>While there are several known electrogenic bacteria known to exist, we have chosen <i>Shewanella oneidensis</i> MR-1 . There were several reason for this: </p>
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</div>
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<br>
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<div class="edges";>
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<div class="opa">
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<br>
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<ul>
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<li><b>Good Availability:</b> It was accessible even with limited financial resources</li>
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<li><b>Quick Growth: </b>grows faster and easier than <i> Geobactor metallireducens</i></li>
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<li><b>Facultative Anaerobe:</b> <i>Shewanella does not die when exposed to air</li>
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<li><b>Electrogenic:</b> <i>Shewanella oneidensis</i> is electrogenic because it can reduce metals</li>
</ul>
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<h3>Design Goals</h3>
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<p>Primary goal in the MFC's design:</p>
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<li>Increase Biofilm Growth</li>
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<p>There are a few wiki requirements teams must follow:</p>
 
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<li>All pages, images and files must be hosted on the <a href ="https://2014.igem.org/Special:Upload">  2014.igem.org server</a>. </li>
 
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<li>All pages must be created under the team’s name space.</li>
 
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<li>As part of your documentation, keep the links from the menu to the left. </li>
 
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<li>Do not use flash in wiki code. </li>
 
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<li>The <a href="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png"> iGEM logo </a> should be placed on the upper part of every page and should link to <a href="https://2014.igem.org/Main_Page">2014.igem.org</a>.</li>
 
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<p>Visit the <a href="https://2014.igem.org/Wiki_How-To"> Wiki How To page </a> for a complete list of requirements, tips and other useful information. </p>
 
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<tr><td colspan="3" > <h3> Tips  </h3></td></tr>
 
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<p>We are currently working on providing teams with some easy to use design templates.
 
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<br> In the meantime you can also view other team wikis for inspiration! Here are some very good examples</p>
 
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<li> <a href="https://2013.igem.org/Team:SDU-Denmark/"> 2013 SDU Denmark </a> </li>
 
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<li> <a href="https://2013.igem.org/Team:SYSU-China">2013 SYSU China</a> </li>
 
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<li> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_ATCG"> 2013 Shenxhen BGIG ATCG </a></li>
 
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<li> <a href="https://2013.igem.org/Team:Colombia_Uniandes">2013 Colombia Unianades </a></li>
 
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<li> <a href="https://2013.igem.org/Team:Lethbridge">2013 Lethbridge</a></li>
 
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<p>For a full wiki list, you can visit <a href="https://igem.org/Team_Wikis?year=2013">iGEM 2013 web sites </a> and <a href="https://igem.org/Team_Wikis?year=2012">iGEM 2012 web sites</a>  lists. </p>
 
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<td> </td>
 
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<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
 
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<div id="NavigationBar1" style="position:absolute;left:42px;top:373px;width:133px;height:168px;z-index:19;">
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<li>State your accomplishments! Tell people what you have achieved from the start. </li>
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<li>Be clear about what you are doing and what you plan to do.</li>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE"><img alt="" src="https://static.igem.org/mediawiki/2014/7/7a/Homeh.gif" class="hover"><span><img alt="" src="https://static.igem.org/mediawiki/2014/7/74/Home.gif"></span></a></li>
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<li>Make sure information is easy to find; nothing should be more than 3 clicks away. </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Team"><img alt="" src="https://static.igem.org/mediawiki/2014/5/56/Teamh.gif" class="hover"><span><img alt="" src="https://static.igem.org/mediawiki/2014/4/4e/Team.gif"></span></a></li>
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<li>Avoid using very small fonts and low contrast colors; information should be easy to read. </li>
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<li><a href="https://igem.org/Team.cgi?year=2014&team_name=UC-Santa_Cruz-BioE"><img alt="" src="https://static.igem.org/mediawiki/2014/d/db/Officialh.gif" class="hover"><span><img alt="" src="https://static.igem.org/mediawiki/2014/b/bb/Official.gif"></span></a></li>
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<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="">iGEM 2013 calendar</a> </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Project"><img alt="" src="https://static.igem.org/mediawiki/2014/c/c7/Projecth.gif" class="hover"><span><img alt="" src="https://static.igem.org/mediawiki/2014/a/a8/Project.gif"></span></a></li>
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<li>Have lots of fun! </li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Notebook"><img alt="" src="https://static.igem.org/mediawiki/2014/f/f1/Noteh.gif" class="hover"><span><img alt="" src="https://static.igem.org/mediawiki/2014/6/62/Note.gif"></span></a></li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Safety"><img alt="" src="https://static.igem.org/mediawiki/2014/4/4f/Safetyh.gif" class="hover" <span><img alt="" src="https://static.igem.org/mediawiki/2014/4/4b/Safety.gif"></span></a></li>
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<li><a href="https://2014.igem.org/Team:UC-Santa_Cruz-BioE/Attributions"><img alt="" src="https://static.igem.org/mediawiki/2014/c/cb/Atth.gif"  class="hover"> <span><img alt="" src="https://static.igem.org/mediawiki/2014/a/aa/Att.gif"></span></a></li>
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<a href="https://2014.igem.org/Main_Page"><img src="https://static.igem.org/mediawiki/2014/e/ea/UCsantaIgemlogo_300px.png" id="Image1" alt="" style="width:65px;height:64px;"></a></div>
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A Little Introduction...

What is a microbial fuel cell?

Microbial fuel cells (MFCs) generate electricity via the anaerobic metabolism of certain types of bacteria. Such electrogenic organisms are able to transfer electrons during the metabolism of organic material. Naturally, it follows that, with a little bit of design, these bacteria can be used to generate a current in a fuel cell. There is definite possibility that MFCs could be used extensively as a means to collect energy from waste water. Therefore, we have set out to create our own MFC, in a project where life and electronics aggregate together.

On Our Bacteria of Choice

While there are several known electrogenic bacteria known to exist, we have chosen Shewanella oneidensis MR-1 . There were several reason for this:



  • Good Availability: It was accessible even with limited financial resources
  • Quick Growth: grows faster and easier than Geobactor metallireducens
  • Facultative Anaerobe: Shewanella does not die when exposed to air
  • Electrogenic: Shewanella oneidensis is electrogenic because it can reduce metals

Design Goals

Primary goal in the MFC's design:

  1. Increase Biofilm Growth

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