Team:UT-Tokyo/Counter/Project/Lab
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+ | <div id = "Lab-1"> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/c/cd/Sub_parts.png" class = "contTitle" /> | ||
+ | <h3>Favorite Parts</h3> | ||
+ | <TABLE id="Table_1" border="1" cellspacing="0" cellpadding="0" abp="28" style="width:880px;background-color:#FFF;margin-left:10px;"> | ||
+ | <THEAD abp="29"> | ||
+ | <TR abp="30"> | ||
+ | <TH abp="33">Name</TH> | ||
+ | <TH colspan="1" abp="34">Type | ||
+ | <TH colspan="1" abp="35">Description | ||
+ | <TH colspan="1" abp="36">Designer | ||
+ | <TH colspan="1" abp="37">Length | ||
+ | <TH abp="38"> | ||
+ | </TR> | ||
+ | </THEAD> | ||
+ | <TBODY abp="39"> | ||
+ | <!-- ROW --> | ||
+ | <TR abp="45"> | ||
+ | <TD abp="48"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461000" abp="49">BBa_K1461000</A></TD> | ||
+ | <TD abp="50">RBS</TD> | ||
+ | <TD abp="51">crRBS</TD> | ||
+ | <TD width="100" abp="52">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="53">52</TD> | ||
+ | <TD abp="54"></TD> | ||
+ | <TR abp="60"> | ||
+ | <TD abp="63"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461001" abp="64">BBa_K1461001</A></TD> | ||
+ | <TD abp="65">Regulatory</TD> | ||
+ | <TD abp="66">ecf20 promoter</TD> | ||
+ | <TD width="100" abp="67">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="68">80</TD> | ||
+ | <TD abp="69"></TD> | ||
+ | <TR abp="75"> | ||
+ | <TD abp="78"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461002" abp="79">BBa_K1461002</A></TD> | ||
+ | <TD abp="80">Regulatory</TD> | ||
+ | <TD abp="81">ecf11 promoter</TD> | ||
+ | <TD width="100" abp="82">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="83">80</TD> | ||
+ | <TD abp="84"></TD> | ||
+ | <TR abp="90"> | ||
+ | <TD abp="93"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461003" abp="94">BBa_K1461003</A></TD> | ||
+ | <TD abp="95">RNA</TD> | ||
+ | <TD abp="96">taRNA</TD> | ||
+ | <TD width="100" abp="97">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="98">71</TD> | ||
+ | <TD abp="99"></TD> | ||
+ | <TR abp="105"> | ||
+ | <TD abp="108"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461004" abp="109">BBa_K1461004</A></TD> | ||
+ | <TD abp="110">Coding</TD> | ||
+ | <TD abp="111">ecf20</TD> | ||
+ | <TD width="100" abp="112">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="113">582</TD> | ||
+ | <TD abp="114"></TD> | ||
+ | <TR abp="120"> | ||
+ | <TD abp="123"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461005" abp="124">BBa_K1461005</A></TD> | ||
+ | <TD abp="125">Coding</TD> | ||
+ | <TD abp="126">ecf11</TD> | ||
+ | <TD width="100" abp="127">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="128">609</TD> | ||
+ | <TD abp="129"></TD> | ||
+ | <TR abp="135"> | ||
+ | <TD abp="138"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461006" abp="139">BBa_K1461006</A></TD> | ||
+ | <TD abp="140">Coding</TD> | ||
+ | <TD abp="141">anti ecf20</TD> | ||
+ | <TD width="100" abp="142">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="143">432</TD> | ||
+ | <TD abp="144"></TD> | ||
+ | <TR abp="150"> | ||
+ | <TD abp="153"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461007" abp="154">BBa_K1461007</A></TD> | ||
+ | <TD abp="155">Coding</TD> | ||
+ | <TD abp="156">anti ecf11</TD> | ||
+ | <TD width="100" abp="157">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="158">663</TD> | ||
+ | <TD abp="159"></TD> | ||
+ | </TR> | ||
+ | </TBODY> | ||
+ | </TABLE> | ||
+ | <BR abp="162"> | ||
+ | <h3>Other Pars</h3> | ||
+ | <TABLE id="Table_2" border="1" cellspacing="0" cellpadding="0" abp="173" style="width:880px;background-color:#FFF;margin-left:10px;"> | ||
+ | <THEAD abp="174"> | ||
+ | <TR abp="175"> | ||
+ | <TH abp="178">Name</TH> | ||
+ | <TH colspan="1" abp="179">Type | ||
+ | <TH colspan="1" abp="180">Description | ||
+ | <TH colspan="1" abp="181">Designer | ||
+ | <TH colspan="1" abp="182">Length | ||
+ | <TH abp="183"> | ||
+ | </TR> | ||
+ | </THEAD> | ||
+ | <TBODY abp="184"> | ||
+ | <TR abp="190"> | ||
+ | <TD abp="193"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461008" abp="194">BBa_K1461008</A></TD> | ||
+ | <TD abp="195">Coding</TD> | ||
+ | <TD abp="196">GFP (AAV tag +)</TD> | ||
+ | <TD width="100" abp="197">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="198">742</TD> | ||
+ | <TD abp="199"></TD> | ||
+ | <TR abp="205"> | ||
+ | <TD abp="208"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461009" abp="209">BBa_K1461009</A></TD> | ||
+ | <TD abp="210">Coding</TD> | ||
+ | <TD abp="211">GFP (AAV tag +)</TD> | ||
+ | <TD width="100" abp="212">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="213">742</TD> | ||
+ | <TD abp="214"></TD> | ||
+ | <TR abp="325"> | ||
+ | <TD abp="328"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461200" abp="329">BBa_K1461200</A></TD> | ||
+ | <TD abp="330">Composite</TD> | ||
+ | <TD abp="331">taRNA (+d.term)</TD> | ||
+ | <TD width="100" abp="332">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="333">208</TD> | ||
+ | <TD abp="334"></TD> | ||
+ | <TR abp="340"> | ||
+ | <TD abp="343"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461201" abp="344">BBa_K1461201</A></TD> | ||
+ | <TD abp="345">Composite</TD> | ||
+ | <TD abp="346">ecf20 (+RBS, +d.term)</TD> | ||
+ | <TD width="100" abp="347">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="348">737</TD> | ||
+ | <TD abp="349"></TD> | ||
+ | <TR abp="355"> | ||
+ | <TD abp="358"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461202" abp="359">BBa_K1461202</A></TD> | ||
+ | <TD abp="360">Composite</TD> | ||
+ | <TD abp="361">ecf11 (+RBS, +d.term)</TD> | ||
+ | <TD width="100" abp="362">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="363">764</TD> | ||
+ | <TD abp="364"></TD> | ||
+ | <TR abp="370"> | ||
+ | <TD abp="373"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461203" abp="374">BBa_K1461203</A></TD> | ||
+ | <TD abp="375">Composite</TD> | ||
+ | <TD abp="376">cr-ecf20 (+RBS, +d.term)</TD> | ||
+ | <TD width="100" abp="377">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="378">777</TD> | ||
+ | <TD abp="379"></TD> | ||
+ | <TR abp="385"> | ||
+ | <TD abp="388"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461204" abp="389">BBa_K1461204</A></TD> | ||
+ | <TD abp="390">Composite</TD> | ||
+ | <TD abp="391">cr-ecf11 (+RBS, +d.term)</TD> | ||
+ | <TD width="100" abp="392">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="393">804</TD> | ||
+ | <TD abp="394"></TD> | ||
+ | <TR abp="400"> | ||
+ | <TD abp="403"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461205" abp="404">BBa_K1461205</A></TD> | ||
+ | <TD abp="405">Composite</TD> | ||
+ | <TD abp="406">cr-GFP (+RBS, +d.term)</TD> | ||
+ | <TD width="100" abp="407">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="408">915</TD> | ||
+ | <TD abp="409"></TD> | ||
+ | <TR abp="415"> | ||
+ | <TD abp="418"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461206" abp="419">BBa_K1461206</A></TD> | ||
+ | <TD abp="420">Composite</TD> | ||
+ | <TD abp="421">anti ecf20 (+RBS, +d.term)</TD> | ||
+ | <TD width="100" abp="422">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="423">587</TD> | ||
+ | <TD abp="424"></TD> | ||
+ | <TR abp="430"> | ||
+ | <TD abp="433"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461207" abp="434">BBa_K1461207</A></TD> | ||
+ | <TD abp="435">Composite</TD> | ||
+ | <TD abp="436">anti ecf11 (+RBS, +d.term)</TD> | ||
+ | <TD width="100" abp="437">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="438">818</TD> | ||
+ | <TD abp="439"></TD> | ||
+ | <TR abp="955"> | ||
+ | <TD abp="958"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461300" abp="959">BBa_K1461300</A></TD> | ||
+ | <TD abp="960">Composite</TD> | ||
+ | <TD abp="961">RBS-GFP-4miR-142-3p bindng sites-d.term</TD> | ||
+ | <TD width="100" abp="962">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="963">1007</TD> | ||
+ | <TD abp="964"></TD> | ||
+ | <TR abp="970"> | ||
+ | <TD abp="973"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461301" abp="974">BBa_K1461301</A></TD> | ||
+ | <TD abp="975">Composite</TD> | ||
+ | <TD abp="976">RBS-GFP-4 miR-142-5p bindng sites-d.term</TD> | ||
+ | <TD width="100" abp="977">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="978">999</TD> | ||
+ | <TD abp="979"></TD> | ||
+ | <TR abp="985"> | ||
+ | <TD abp="988"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461302" abp="989">BBa_K1461302</A></TD> | ||
+ | <TD abp="990">Composite</TD> | ||
+ | <TD abp="991">RBS-GFP-miR 142 3p non-binding site-d.term</TD> | ||
+ | <TD width="100" abp="992">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="993">1001</TD> | ||
+ | <TD abp="994"></TD> | ||
+ | <TR abp="1000"> | ||
+ | <TD abp="1003"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461303" abp="1004">BBa_K1461303</A></TD> | ||
+ | <TD abp="1005">Composite</TD> | ||
+ | <TD abp="1006">RBS-GFP-miR 142 5p non-binding site-d.term</TD> | ||
+ | <TD width="100" abp="1007">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1008">1007</TD> | ||
+ | <TD abp="1009"></TD> | ||
+ | <TR abp="1015"> | ||
+ | <TD abp="1018"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461304" abp="1019">BBa_K1461304</A></TD> | ||
+ | <TD abp="1020">Composite</TD> | ||
+ | <TD abp="1021">RBS-GFP-2miR 142 3p bindng sites-2miR 142 5p bindng sites-d.term</TD> | ||
+ | <TD width="100" abp="1022">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1023">1003</TD> | ||
+ | <TD abp="1024"></TD> | ||
+ | <TR abp="1030"> | ||
+ | <TD abp="1033"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461305" abp="1034">BBa_K1461305</A></TD> | ||
+ | <TD abp="1035">Composite</TD> | ||
+ | <TD abp="1036">RBS-GFP-2miR 142 3p non-bindng sites-2miR 142 5p non-bindng sites-d.term</TD> | ||
+ | <TD width="100" abp="1037">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1038">1003</TD> | ||
+ | <TD abp="1039"></TD> | ||
+ | <TR abp="445"> | ||
+ | <TD abp="448"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461208" abp="449">BBa_K1461208</A></TD> | ||
+ | <TD abp="450">Generator</TD> | ||
+ | <TD abp="451">taRNA (arabinose-induced) (+d.term)</TD> | ||
+ | <TD width="100" abp="452">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="453">346</TD> | ||
+ | <TD abp="454"></TD> | ||
+ | <TR abp="460"> | ||
+ | <TD abp="463"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461209" abp="464">BBa_K1461209</A></TD> | ||
+ | <TD abp="465">Generator</TD> | ||
+ | <TD abp="466">arabinose-induced ecf20 generator</TD> | ||
+ | <TD width="100" abp="467">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="468">875</TD> | ||
+ | <TD abp="469"></TD> | ||
+ | <TR abp="475"> | ||
+ | <TD abp="478"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461210" abp="479">BBa_K1461210</A></TD> | ||
+ | <TD abp="480">Generator</TD> | ||
+ | <TD abp="481">constitutive ecf20 generator</TD> | ||
+ | <TD width="100" abp="482">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="483">780</TD> | ||
+ | <TD abp="484"></TD> | ||
+ | <TR abp="490"> | ||
+ | <TD abp="493"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461211" abp="494">BBa_K1461211</A></TD> | ||
+ | <TD abp="495">Generator</TD> | ||
+ | <TD abp="496">arabinose-induced ecf11 generator</TD> | ||
+ | <TD width="100" abp="497">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="498">902</TD> | ||
+ | <TD abp="499"></TD> | ||
+ | <TR abp="505"> | ||
+ | <TD abp="508"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461212" abp="509">BBa_K1461212</A></TD> | ||
+ | <TD abp="510">Generator</TD> | ||
+ | <TD abp="511">constitutive ecf11 generator</TD> | ||
+ | <TD width="100" abp="512">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="513">807</TD> | ||
+ | <TD abp="514"></TD> | ||
+ | <TR abp="520"> | ||
+ | <TD abp="523"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461213" abp="524">BBa_K1461213</A></TD> | ||
+ | <TD abp="525">Generator</TD> | ||
+ | <TD abp="526">arabinose-induced cr-ecf20 generator</TD> | ||
+ | <TD width="100" abp="527">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="528">915</TD> | ||
+ | <TD abp="529"></TD> | ||
+ | <TR abp="535"> | ||
+ | <TD abp="538"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461214" abp="539">BBa_K1461214</A></TD> | ||
+ | <TD abp="540">Generator</TD> | ||
+ | <TD abp="541">constitutive cr-ecf20 generator</TD> | ||
+ | <TD width="100" abp="542">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="543">820</TD> | ||
+ | <TD abp="544"></TD> | ||
+ | <TR abp="550"> | ||
+ | <TD abp="553"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461215" abp="554">BBa_K1461215</A></TD> | ||
+ | <TD abp="555">Generator</TD> | ||
+ | <TD abp="556">arabinose-induced cr-ecf11 generator</TD> | ||
+ | <TD width="100" abp="557">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="558">942</TD> | ||
+ | <TD abp="559"></TD> | ||
+ | <TR abp="565"> | ||
+ | <TD abp="568"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461216" abp="569">BBa_K1461216</A></TD> | ||
+ | <TD abp="570">Generator</TD> | ||
+ | <TD abp="571">constitutive cr-ecf11 generator</TD> | ||
+ | <TD width="100" abp="572">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="573">847</TD> | ||
+ | <TD abp="574"></TD> | ||
+ | <TR abp="580"> | ||
+ | <TD abp="583"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461217" abp="584">BBa_K1461217</A></TD> | ||
+ | <TD abp="585">Generator</TD> | ||
+ | <TD abp="586">arabinose-induced cr-GFP generator</TD> | ||
+ | <TD width="100" abp="587">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="588">1053</TD> | ||
+ | <TD abp="589"></TD> | ||
+ | <TR abp="595"> | ||
+ | <TD abp="598"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461218" abp="599">BBa_K1461218</A></TD> | ||
+ | <TD abp="600">Generator</TD> | ||
+ | <TD abp="601">constitutive cr-GFP generator</TD> | ||
+ | <TD width="100" abp="602">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="603">958</TD> | ||
+ | <TD abp="604"></TD> | ||
+ | <TR abp="610"> | ||
+ | <TD abp="613"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461219" abp="614">BBa_K1461219</A></TD> | ||
+ | <TD abp="615">Generator</TD> | ||
+ | <TD abp="616">ecf20-induced GFP generator</TD> | ||
+ | <TD width="100" abp="617">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="618">963</TD> | ||
+ | <TD abp="619"></TD> | ||
+ | <TR abp="625"> | ||
+ | <TD abp="628"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461220" abp="629">BBa_K1461220</A></TD> | ||
+ | <TD abp="630">Generator</TD> | ||
+ | <TD abp="631">ecf11-induced GFP generator</TD> | ||
+ | <TD width="100" abp="632">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="633">963</TD> | ||
+ | <TD abp="634"></TD> | ||
+ | <TR abp="640"> | ||
+ | <TD abp="643"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461221" abp="644">BBa_K1461221</A></TD> | ||
+ | <TD abp="645">Generator</TD> | ||
+ | <TD abp="646">ecf20 generator (positive feedback)</TD> | ||
+ | <TD width="100" abp="647">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="648">825</TD> | ||
+ | <TD abp="649"></TD> | ||
+ | <TR abp="655"> | ||
+ | <TD abp="658"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461222" abp="659">BBa_K1461222</A></TD> | ||
+ | <TD abp="660">Generator</TD> | ||
+ | <TD abp="661">ecf11 generator (positive feedback)</TD> | ||
+ | <TD width="100" abp="662">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="663">852</TD> | ||
+ | <TD abp="664"></TD> | ||
+ | <TR abp="670"> | ||
+ | <TD abp="673"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461223" abp="674">BBa_K1461223</A></TD> | ||
+ | <TD abp="675">Generator</TD> | ||
+ | <TD abp="676">anti ecf20 generator (pLac)</TD> | ||
+ | <TD width="100" abp="677">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="678">795</TD> | ||
+ | <TD abp="679"></TD> | ||
+ | <TR abp="685"> | ||
+ | <TD abp="688"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461224" abp="689">BBa_K1461224</A></TD> | ||
+ | <TD abp="690">Generator</TD> | ||
+ | <TD abp="691">anti ecf11 generator (pLac)</TD> | ||
+ | <TD width="100" abp="692">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="693">1026</TD> | ||
+ | <TD abp="694"></TD> | ||
+ | <TR abp="700"> | ||
+ | <TD abp="703"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461225" abp="704">BBa_K1461225</A></TD> | ||
+ | <TD abp="705">Measurement</TD> | ||
+ | <TD abp="706">ecf20 promoter measurement system</TD> | ||
+ | <TD width="100" abp="707">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="708">1846</TD> | ||
+ | <TD abp="709"></TD> | ||
+ | <TR abp="715"> | ||
+ | <TD abp="718"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461226" abp="719">BBa_K1461226</A></TD> | ||
+ | <TD abp="720">Measurement</TD> | ||
+ | <TD abp="721">ecf11 promoter measurement system</TD> | ||
+ | <TD width="100" abp="722">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="723">1873</TD> | ||
+ | <TD abp="724"></TD> | ||
+ | <TR abp="790"> | ||
+ | <TD abp="793"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461231" abp="794">BBa_K1461231</A></TD> | ||
+ | <TD abp="795">Measurement</TD> | ||
+ | <TD abp="796">arabinose-induced GFP and taRNA generator</TD> | ||
+ | <TD width="100" abp="797">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="798">1407</TD> | ||
+ | <TD abp="799"></TD> | ||
+ | <TR abp="805"> | ||
+ | <TD abp="808"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461232" abp="809">BBa_K1461232</A></TD> | ||
+ | <TD abp="810">Measurement</TD> | ||
+ | <TD abp="811">single counter</TD> | ||
+ | <TD width="100" abp="812">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="813">1312</TD> | ||
+ | <TD abp="814"></TD> | ||
+ | <TR abp="820"> | ||
+ | <TD abp="823"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461233" abp="824">BBa_K1461233</A></TD> | ||
+ | <TD abp="825">Measurement</TD> | ||
+ | <TD abp="826">ecf20 promoter mesurement system (positive feedback)</TD> | ||
+ | <TD width="100" abp="827">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="828">2679</TD> | ||
+ | <TD abp="829"></TD> | ||
+ | <TR abp="835"> | ||
+ | <TD abp="838"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461234" abp="839">BBa_K1461234</A></TD> | ||
+ | <TD abp="840">Measurement</TD> | ||
+ | <TD abp="841">ecf11 promoter mesurement system (positive feedback) </TD> | ||
+ | <TD width="100" abp="842">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="843">2733</TD> | ||
+ | <TD abp="844"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="845"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="846"> | ||
+ | <INPUT name="part" type="hidden" value="32820" abp="847"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="848"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="849"> | ||
+ | <TR abp="850"> | ||
+ | <TD abp="853"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461235" abp="854">BBa_K1461235</A></TD> | ||
+ | <TD abp="855">Measurement</TD> | ||
+ | <TD abp="856">resettable counter device using ecf20 (w/o crRBS, taRNA)</TD> | ||
+ | <TD width="100" abp="857">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="858">3482</TD> | ||
+ | <TD abp="859"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="860"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="861"> | ||
+ | <INPUT name="part" type="hidden" value="32821" abp="862"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="863"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="864"> | ||
+ | <TR abp="865"> | ||
+ | <TD abp="868"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461236" abp="869">BBa_K1461236</A></TD> | ||
+ | <TD abp="870">Measurement</TD> | ||
+ | <TD abp="871">resettable counter device using ecf11 (w/o crRBS, taRNA) </TD> | ||
+ | <TD width="100" abp="872">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="873">3767</TD> | ||
+ | <TD abp="874"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="875"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="876"> | ||
+ | <INPUT name="part" type="hidden" value="32822" abp="877"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="878"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="879"> | ||
+ | <TR abp="880"> | ||
+ | <TD abp="883"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461237" abp="884">BBa_K1461237</A></TD> | ||
+ | <TD abp="885">Measurement</TD> | ||
+ | <TD abp="886">sigma factors cross-talk assay 1</TD> | ||
+ | <TD width="100" abp="887">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="888">1873</TD> | ||
+ | <TD abp="889"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="890"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="891"> | ||
+ | <INPUT name="part" type="hidden" value="32823" abp="892"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="893"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="894"> | ||
+ | <TR abp="895"> | ||
+ | <TD abp="898"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461238" abp="899">BBa_K1461238</A></TD> | ||
+ | <TD abp="900">Measurement</TD> | ||
+ | <TD abp="901">sigma factors cross-talk assay 2</TD> | ||
+ | <TD width="100" abp="902">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="903">1846</TD> | ||
+ | <TD abp="904"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="905"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="906"> | ||
+ | <INPUT name="part" type="hidden" value="32826" abp="907"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="908"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="909"> | ||
+ | <TR abp="730"> | ||
+ | <TD abp="733"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461227" abp="734">BBa_K1461227</A></TD> | ||
+ | <TD abp="735">Project</TD> | ||
+ | <TD abp="736">resettable single counter system using ecf20</TD> | ||
+ | <TD width="100" abp="737">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="738">2671</TD> | ||
+ | <TD abp="739"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="740"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="741"> | ||
+ | <INPUT name="part" type="hidden" value="32813" abp="742"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="743"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="744"> | ||
+ | <TR abp="745"> | ||
+ | <TD abp="748"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461228" abp="749">BBa_K1461228</A></TD> | ||
+ | <TD abp="750">Project</TD> | ||
+ | <TD abp="751">reset function using ecf20</TD> | ||
+ | <TD width="100" abp="752">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="753">2576</TD> | ||
+ | <TD abp="754"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="755"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="756"> | ||
+ | <INPUT name="part" type="hidden" value="32814" abp="757"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="758"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="759"> | ||
+ | <TR abp="760"> | ||
+ | <TD abp="763"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461229" abp="764">BBa_K1461229</A></TD> | ||
+ | <TD abp="765">Project</TD> | ||
+ | <TD abp="766">resettable single counter system using ecf11</TD> | ||
+ | <TD width="100" abp="767">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="768">2834</TD> | ||
+ | <TD abp="769"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="770"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="771"> | ||
+ | <INPUT name="part" type="hidden" value="32815" abp="772"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="773"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="774"> | ||
+ | <TR abp="775"> | ||
+ | <TD abp="778"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461230" abp="779">BBa_K1461230</A></TD> | ||
+ | <TD abp="780">Project</TD> | ||
+ | <TD abp="781">reset function using ecf11</TD> | ||
+ | <TD width="100" abp="782">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="783">2929</TD> | ||
+ | <TD abp="784"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="785"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="786"> | ||
+ | <INPUT name="part" type="hidden" value="32816" abp="787"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="788"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="789"> | ||
+ | <TR abp="910"> | ||
+ | <TD abp="913"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461239" abp="914">BBa_K1461239</A></TD> | ||
+ | <TD abp="915">Project</TD> | ||
+ | <TD abp="916">σ-Re Counter (double, using ecf20)</TD> | ||
+ | <TD width="100" abp="917">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="918">3821</TD> | ||
+ | <TD abp="919"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="920"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="921"> | ||
+ | <INPUT name="part" type="hidden" value="32827" abp="922"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="923"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="924"> | ||
+ | <TR abp="925"> | ||
+ | <TD abp="928"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461240" abp="929">BBa_K1461240</A></TD> | ||
+ | <TD abp="930">Project</TD> | ||
+ | <TD abp="931">σ-Re Counter (double, using ecf11)</TD> | ||
+ | <TD width="100" abp="932">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="933">4106</TD> | ||
+ | <TD abp="934"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="935"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="936"> | ||
+ | <INPUT name="part" type="hidden" value="32829" abp="937"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="938"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="939"> | ||
+ | <TR abp="940"> | ||
+ | <TD abp="943"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461241" abp="944">BBa_K1461241</A></TD> | ||
+ | <TD abp="945">Project</TD> | ||
+ | <TD abp="946">σ-Re Counter (triple)</TD> | ||
+ | <TD width="100" abp="947">Takefumi Yoshikawa</TD> | ||
+ | <TD align="right" abp="948">6615</TD> | ||
+ | <TD abp="949"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="950"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="951"> | ||
+ | <INPUT name="part" type="hidden" value="32571" abp="952"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="953"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="954"> | ||
+ | <TR abp="280"> | ||
+ | <TD abp="283"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461104" abp="284">BBa_K1461104</A></TD> | ||
+ | <TD abp="285">Regulatory</TD> | ||
+ | <TD abp="286">EpCAM promoter</TD> | ||
+ | <TD width="100" abp="287">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="288">?</TD> | ||
+ | <TD abp="289"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="290"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="291"> | ||
+ | <INPUT name="part" type="hidden" value="32405" abp="292"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="293"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="294"> | ||
+ | <TR abp="295"> | ||
+ | <TD abp="298"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461105" abp="299">BBa_K1461105</A></TD> | ||
+ | <TD abp="300">Regulatory</TD> | ||
+ | <TD abp="301">EpCAM promoter(mutant)</TD> | ||
+ | <TD width="100" abp="302">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="303">?</TD> | ||
+ | <TD abp="304"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="305"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="306"> | ||
+ | <INPUT name="part" type="hidden" value="32404" abp="307"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="308"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="309"> | ||
+ | <TR abp="220"> | ||
+ | <TD abp="223"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461100" abp="224">BBa_K1461100</A></TD> | ||
+ | <TD abp="225">RNA</TD> | ||
+ | <TD abp="226">miR-142-3p target binding site</TD> | ||
+ | <TD width="100" abp="227">ドリキャス?</TD> | ||
+ | <TD align="right" abp="228">25</TD> | ||
+ | <TD abp="229"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="230"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="231"> | ||
+ | <INPUT name="part" type="hidden" value="32402" abp="232"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="233"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="234"> | ||
+ | <TR abp="235"> | ||
+ | <TD abp="238"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461101" abp="239">BBa_K1461101</A></TD> | ||
+ | <TD abp="240">RNA</TD> | ||
+ | <TD abp="241">miR-142-5p target bindng site</TD> | ||
+ | <TD width="100" abp="242">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="243">23</TD> | ||
+ | <TD abp="244"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="245"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="246"> | ||
+ | <INPUT name="part" type="hidden" value="32658" abp="247"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="248"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="249"> | ||
+ | <TR abp="250"> | ||
+ | <TD abp="253"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461102" abp="254">BBa_K1461102</A></TD> | ||
+ | <TD abp="255">RNA</TD> | ||
+ | <TD abp="256">miRNA-142 binding site control1</TD> | ||
+ | <TD width="100" abp="257">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="258">23</TD> | ||
+ | <TD abp="259"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="260"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="261"> | ||
+ | <INPUT name="part" type="hidden" value="32659" abp="262"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="263"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="264"> | ||
+ | <TR abp="265"> | ||
+ | <TD abp="268"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461103" abp="269">BBa_K1461103</A></TD> | ||
+ | <TD abp="270">RNA</TD> | ||
+ | <TD abp="271">miRNA-142 binding site control2</TD> | ||
+ | <TD width="100" abp="272">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="273">25</TD> | ||
+ | <TD abp="274"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="275"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="276"> | ||
+ | <INPUT name="part" type="hidden" value="32403" abp="277"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="278"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="279"> | ||
+ | <TR abp="1045"> | ||
+ | <TD abp="1048"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461306" abp="1049">BBa_K1461306</A></TD> | ||
+ | <TD abp="1050">Translational_Unit</TD> | ||
+ | <TD abp="1051">pCMV-RBS-GFP-4 miR 142 3p site-d.term</TD> | ||
+ | <TD width="100" abp="1052">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1053">1595</TD> | ||
+ | <TD abp="1054"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="1055"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="1056"> | ||
+ | <INPUT name="part" type="hidden" value="32639" abp="1057"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="1058"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="1059"> | ||
+ | <TR abp="1060"> | ||
+ | <TD abp="1063"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461307" abp="1064">BBa_K1461307</A></TD> | ||
+ | <TD abp="1065">Translational_Unit</TD> | ||
+ | <TD abp="1066">pCMV-RBS-GFP-4 miR 142 5p site-d.term</TD> | ||
+ | <TD width="100" abp="1067">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1068">1587</TD> | ||
+ | <TD abp="1069"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="1070"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="1071"> | ||
+ | <INPUT name="part" type="hidden" value="32640" abp="1072"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="1073"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="1074"> | ||
+ | <TR abp="1075"> | ||
+ | <TD abp="1078"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461308" abp="1079">BBa_K1461308</A></TD> | ||
+ | <TD abp="1080">Translational_Unit</TD> | ||
+ | <TD abp="1081">pCMV-RBS-GFP-4 miR 142 3p non-binding sites-d.term</TD> | ||
+ | <TD width="100" abp="1082">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1083">1589</TD> | ||
+ | <TD abp="1084"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="1085"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="1086"> | ||
+ | <INPUT name="part" type="hidden" value="32641" abp="1087"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="1088"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="1089"> | ||
+ | <TR abp="1090"> | ||
+ | <TD abp="1093"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461309" abp="1094">BBa_K1461309</A></TD> | ||
+ | <TD abp="1095">Translational_Unit</TD> | ||
+ | <TD abp="1096">pCMV-RBS-GFP-4 miR 142 5p non-bindgin sites-d.term</TD> | ||
+ | <TD width="100" abp="1097">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1098">1595</TD> | ||
+ | <TD abp="1099"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="1100"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="1101"> | ||
+ | <INPUT name="part" type="hidden" value="32642" abp="1102"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="1103"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="1104"> | ||
+ | <TR abp="1105"> | ||
+ | <TD abp="1108"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461310" abp="1109">BBa_K1461310</A></TD> | ||
+ | <TD abp="1110">Translational_Unit</TD> | ||
+ | <TD abp="1111">pCMV-RBS-GFP-2 miR 142 3p bindgin sites-2 miR 142 5p binding site-d.term</TD> | ||
+ | <TD width="100" abp="1112">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1113">1591</TD> | ||
+ | <TD abp="1114"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="1115"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="1116"> | ||
+ | <INPUT name="part" type="hidden" value="32643" abp="1117"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="1118"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="1119"> | ||
+ | <TR abp="1120"> | ||
+ | <TD abp="1123"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461311" abp="1124">BBa_K1461311</A></TD> | ||
+ | <TD abp="1125">Translational_Unit</TD> | ||
+ | <TD abp="1126">pCMV-RBS-GFP-2 miR 142 3p non-bindgin sites-2 miR 142 5p non-binding site-d.term</TD> | ||
+ | <TD width="100" abp="1127">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1128">1591</TD> | ||
+ | <TD abp="1129"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="1130"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="1131"> | ||
+ | <INPUT name="part" type="hidden" value="32645" abp="1132"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="1133"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="1134"> | ||
+ | <TR abp="1135"> | ||
+ | <TD abp="1138"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461312" abp="1139">BBa_K1461312</A></TD> | ||
+ | <TD abp="1140">Translational_Unit</TD> | ||
+ | <TD abp="1141">pEpCAM-RBS-GFP-4 miR 142 3p site-d.term</TD> | ||
+ | <TD width="100" abp="1142">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1143">738</TD> | ||
+ | <TD abp="1144"></TD> | ||
+ | <FORM action="/cgi/partsdb/pgroup.cgi?pgroup=iGEM2014&group=UT-Tokyo" enctype="multipart/form-data" method="post" abp="1145"> | ||
+ | </FORM> | ||
+ | <INPUT name="Editing2" type="hidden" value="Editing" abp="1146"> | ||
+ | <INPUT name="part" type="hidden" value="32646" abp="1147"> | ||
+ | <INPUT name="pgroup" type="hidden" value="iGEM2014" abp="1148"> | ||
+ | <INPUT name="group" type="hidden" value="UT-Tokyo" abp="1149"> | ||
+ | <TR abp="1150"> | ||
+ | <TD abp="1153"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461313" abp="1154">BBa_K1461313</A></TD> | ||
+ | <TD abp="1155">Translational_Unit</TD> | ||
+ | <TD abp="1156">pEpCAM-RBS-GFP-4 miR 142 5p site-d.term</TD> | ||
+ | <TD width="100" abp="1157">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1158">?</TD> | ||
+ | <TD abp="1159"></TD> | ||
+ | <TR abp="1165"> | ||
+ | <TD abp="1168"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461314" abp="1169">BBa_K1461314</A></TD> | ||
+ | <TD abp="1170">Translational_Unit</TD> | ||
+ | <TD abp="1171">pEpCAM-RBS-GFP-4 miR 142 3p non-bindng site-d.term</TD> | ||
+ | <TD width="100" abp="1172">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1173">?</TD> | ||
+ | <TD abp="1174"></TD> | ||
+ | <TR abp="1180"> | ||
+ | <TD abp="1183"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461315" abp="1184">BBa_K1461315</A></TD> | ||
+ | <TD abp="1185">Translational_Unit</TD> | ||
+ | <TD abp="1186">pEpCAM-RBS-GFP-4 miR 142 5p non-bindng site-d.term</TD> | ||
+ | <TD width="100" abp="1187">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1188">?</TD> | ||
+ | <TD abp="1189"></TD> | ||
+ | <TR abp="1195"> | ||
+ | <TD abp="1198"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461316" abp="1199">BBa_K1461316</A></TD> | ||
+ | <TD abp="1200">Translational_Unit</TD> | ||
+ | <TD abp="1201">pEpCAM-RBS-GFP-2 miR 142 3p bindgin sites-2 miR 142 5p binding site-d.term</TD> | ||
+ | <TD width="100" abp="1202">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1203">?</TD> | ||
+ | <TD abp="1204"></TD> | ||
+ | <TR abp="1210"> | ||
+ | <TD abp="1213"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461317" abp="1214">BBa_K1461317</A></TD> | ||
+ | <TD abp="1215">Translational_Unit</TD> | ||
+ | <TD abp="1216">pEpCAM-RBS-GFP-2 miR 142 3p non-bindgin sites-2 miR 142 5p non-binding site-d.term</TD> | ||
+ | <TD width="100" abp="1217">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1218">?</TD> | ||
+ | <TD abp="1219"></TD> | ||
+ | <TR abp="1225"> | ||
+ | <TD abp="1228"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461318" abp="1229">BBa_K1461318</A></TD> | ||
+ | <TD abp="1230">Translational_Unit</TD> | ||
+ | <TD abp="1231">pEpCAM(mutant)-RBS-GFP-4 miR 142 3p site-d.term</TD> | ||
+ | <TD width="100" abp="1232">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1233">?</TD> | ||
+ | <TD abp="1234"></TD> | ||
+ | <TR abp="1240"> | ||
+ | <TD abp="1243"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461319" abp="1244">BBa_K1461319</A></TD> | ||
+ | <TD abp="1245">Translational_Unit</TD> | ||
+ | <TD abp="1246">pEpCAM(mutant)-RBS-GFP-4 miR 142 5p site-d.term</TD> | ||
+ | <TD width="100" abp="1247">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1248">?</TD> | ||
+ | <TD abp="1249"></TD> | ||
+ | <TR abp="1255"> | ||
+ | <TD abp="1258"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461320" abp="1259">BBa_K1461320</A></TD> | ||
+ | <TD abp="1260">Translational_Unit</TD> | ||
+ | <TD abp="1261">pEpCAM(mutant)-RBS-GFP-4 miR 142 3p non-bindng site-d.term</TD> | ||
+ | <TD width="100" abp="1262">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1263">?</TD> | ||
+ | <TD abp="1264"></TD> | ||
+ | <TR abp="1270"> | ||
+ | <TD abp="1273"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461321" abp="1274">BBa_K1461321</A></TD> | ||
+ | <TD abp="1275">Translational_Unit</TD> | ||
+ | <TD abp="1276">pEpCAM(mutant)-RBS-GFP-4 miR 142 5p non-bindng site-d.term</TD> | ||
+ | <TD width="100" abp="1277">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1278">?</TD> | ||
+ | <TD abp="1279"></TD> | ||
+ | <TR abp="1285"> | ||
+ | <TD abp="1288"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461322" abp="1289">BBa_K1461322</A></TD> | ||
+ | <TD abp="1290">Translational_Unit</TD> | ||
+ | <TD abp="1291">pEpCAM(mutant)-RBS-GFP-2 miR 142 3p bindgin sites-2 miR 142 5p binding site-d.term</TD> | ||
+ | <TD width="100" abp="1292">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1293">?</TD> | ||
+ | <TD abp="1294"></TD> | ||
+ | <TR abp="1300"> | ||
+ | <TD abp="1303"><A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461323" abp="1304">BBa_K1461323</A></TD> | ||
+ | <TD abp="1305">Translational_Unit</TD> | ||
+ | <TD abp="1306">pEpCAM(mutant)-RBS-GFP-2 miR 142 3p non-bindgin sites-2 miR 142 5p non-binding site-d.term</TD> | ||
+ | <TD width="100" abp="1307">Shunsuke Sumi</TD> | ||
+ | <TD align="right" abp="1308">?</TD> | ||
+ | <TD abp="1309"></TD> | ||
+ | </TR> | ||
+ | </TBODY> | ||
+ | </TABLE> | ||
+ | </div> | ||
+ | <div id = "Lab-2"> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/a/ac/Sub_protocol.png" class = "contTitle" /> | ||
+ | |||
+ | <h3>DNA construction</h3> | ||
+ | <h4>Transformation</h4> | ||
+ | <p>Method<br />1. Put the competent cell on ice and leave it until dissoloved.<br />2. Add DNA 10 μL to competent cell 100 μL on 2 ml tube.<br />3. Place on ice for 30 min.<br />4. Heatshock at 42℃ for 45 sec.<br />5. Place the tube on ice for 3 min.<br />6. Add 1000 μL of LB medium and place tube on 37℃ for 30 min.<br />7. Plate 1000 μL of the medium and spread well.<br />8. Incubate the plate on 37℃ over night.</p> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <p>Method<br />1. Add agarose to 50 ml or 25ml of 1xTAE buffer in Erlenmeyer flask per 1 gel plate. The concentration of gel is 1% for over 1kbp of DNA and use 2% to under 1kbp.<br />2. Wrap the top of Erlenmeyer Flask not to completely seal up. <br />3. Heat it by microwaves until the solution gets transparent.<br />4. Pour it into a gel maker and set a comb before gelling.<br />5. After gelling, remove the comb carefully not to break well.<br />6. Place the gel into tank for electrophoresis and fill 1xTAE up to over the level of gel.<br />7. Add 1 μl of 10xLoading buffer into 10 μl of DNA solution and vortex it.<br />8. Apply 11 μl of sample and 6 μl of ladder solution in each well.<br />9. Electrophoresis at 100 V for 20-30 min.<br />10. The band of bromophenol blue reaches 80% of the gel, stop electrophoresis and salvage the gel.<br />11. Check the band under blue light.</p> | ||
+ | <h4>Colony PCR</h4> | ||
+ | <p>Method<br />1. Mix DNA solution and reagent as follows.<br />(Add10xF-universal Primer and 10xR-Univarsal Primer at a final concentration of 5 μM. Then add 2xGoTaqMix and MillQ.)<br />2. Dispense it to each PCR tube for 10 μl on ice.<br />3. Pick up single colony on plate and dip to the tube.<br />4. Set to Thermal cycler. (95℃ 5 min, 95℃ 30 sec, 53℃ 30 sec, 72℃ 30-180 sec (step 2 - 4 repeated 30 times), 72℃ 3 min)<br />5.Check the length of DNA by Electrophoresis.</p> | ||
+ | <h4>Miniprep</h4> | ||
+ | <p>Material<br />WizardR Plus SV Minipreps DNA Purification System (promega)<br><br>Method<br>1. Pour 3 ml of LB broth to test tube.<br />2. Pick up a single colony and put it into the tube.<br />3. Incubate it at 37℃ for 12~16 hours with the tube shaking.<br />4. Transfer 1.5 ml of culture fluid to 1.5 ml tube.<br />5. Centrifuge at 15000 rpm for 1 min.<br />6. Throw away the supernatant<br />7. add the other 1.0 ml of culture.<br />8. Centrifuge at 15000 rpm for 1 min.<br />9. Throw away the supernatant<br />10. Add 250 μl of Cell-Resuspension Sol and Vortex it until precipitation dissolved.<br />11. Add 250 μl of Cell-Lysis Sol and invert it not to make bubble.<br />12. Add 10 μl of Alkaline Protease and invert it not to make bubble<br />13. Leave it for 3 min at room temperature.<br />14. Add 350 μl of Neutralization Sol and invert it not to make bubble.<br />15. Centrifuge at 15000 rpm 10 min.<br />14. Set a collection tube on column and apply the supernatant to it.<br />15. Centrifuge at15000 rpm for 1 min. <br />16. Add 750 μl of Column Wash Sol and Centrifuge for 1 min at 15000 rpm.<br />17. Remove the flow through.<br />18. Add 250 μl of Column Wash Sol and Centrifuge for 1 min at 15000 rpm.<br />19. Remove the flow through.<br />20. Centrifuge for 2 min at 15000 rpm to dry the column.<br />21. Transfer the column to another 1.5 ml tube.<br />22. Add 50 μl of nuclease-free water and leave it for 1 min at room temperature.<br />23. Centrifuge for 1 min at 15000 rpm.<br />24. Measure concentration of the flow though liquid.</p> | ||
+ | <h4>Digestion</h4> | ||
+ | <p>Material<br />The restriction enzymes (EcoRⅠ, XbaⅠ, SpeⅠ and PstⅠ) are purchased or provided as support for iGEM Japan from Promega.<br />Method<br />1. Mix DNA solution and reagent as follows.(unit μl)<br />2. Incubate for 2 hours at 37℃.<br />3. Add 2 μl of 10x Loading Buffer and Electrophoresis and Gel Extraction.</p> | ||
+ | <h4>Gel extraction</h4> | ||
+ | <p>Method<br />1. After electrophoresis, slice the band and put the gel slice into 1.5 ml tube.<br />2. Add 750 μl of Membrane Bind Sol and stand at 60℃ (Vortex every 2 min)<br />3. Apply to column-set collection tube and Centrifuge for 1 min at 15000 rpm.<br />4. Add 750 μl of Membrane Wash Sol to the column.<br />5. Centrifuge for 1 min and remove the flow through.<br />6. Add 500 μl of Membrane Wash Sol to the column.<br />7. Centrifuge for 1 min and remove the flow through.<br />8. Centrifuge for 2 min to dry the column.<br />9. Transfer the column to another 1.5 ml tube.<br />10. Add 20 μl of nuclease-free water and leave it for 1 min at room temperature.<br />11. Centrifuge for 1 min at 15000 rpm.<br />12. Measure concentration of the flow though liquid.</p> | ||
+ | <h4>Ligation</h4> | ||
+ | <p>Method<br />1. Calculate the mass ratio of Insert DNA to Vector DNA to equal <br />2. Mix the DNA solution and reagent as follows.<br />3. Stand it for 15 min at room temperature.</p> | ||
+ | |||
+ | <h3>Assay method</h3> | ||
+ | |||
+ | <h4>Influence on growth of E. coli</h4> | ||
+ | |||
+ | <p>Material<br /> | ||
+ | Strain: JM109<br /> | ||
+ | Medium: LB<br /><br /> | ||
+ | Method<br /> | ||
+ | 1. Culture O/N.<br /> | ||
+ | 2. Take 30 uL of overnight culture into 3 mL LB medium (containing 50 ug/mL CP).<br /> | ||
+ | 3. Incubate the culture at 37℃ and measure OD600 evry a hour.</p> | ||
+ | |||
+ | |||
+ | <h4>Sigma factor and its crresponding promoter</h4> | ||
+ | <p>Material<br /> | ||
+ | Strain: MG1655<br /> | ||
+ | Medium: M9<br /><br /> | ||
+ | Method<br /> | ||
+ | 1. Culture O/N.<br /> | ||
+ | 2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).<br /> | ||
+ | 3. Incubate the culture until OD600 reaches the range of 0.45-0.95.<br /> | ||
+ | 4. Add 3 uL arabinose (10%) to the culture.<br /> | ||
+ | 5. Incubate the culture 3 hours.<br /> | ||
+ | 6. Measure GFP fluorescence.</p> | ||
+ | |||
+ | <h4>Reset function</h4> | ||
+ | <p>Material<br /> | ||
+ | Strain: MG1655<br /> | ||
+ | Medium: M9<br /><br /> | ||
+ | Method<br /> | ||
+ | 1. Culture O/N.<br /> | ||
+ | 2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).<br /> | ||
+ | 3. Incubate the culture until OD600 reaches the range of 0.5-0.7.<br /> | ||
+ | 4. Add 3 uL arabinose (10%) to the culture.<br /> | ||
+ | 5. Incubate the culture 3 hours.<br /> | ||
+ | 6. Measure GFP fluorescence.<br /> | ||
+ | 7. Add 100mM IPTG 15 uL.<br /> | ||
+ | 8. Incubate O/N.<br /> | ||
+ | 9. Measure GFP fluorescence.</p> | ||
+ | |||
+ | |||
+ | <h4>Riboregulator</h4> | ||
+ | <p>Material<br /> | ||
+ | Strain: JM109<br /> | ||
+ | Medium: LB<br /><br /> | ||
+ | Method<br /> | ||
+ | 1. Culture O/N.<br /> | ||
+ | 2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).<br /> | ||
+ | 3. Incubate the culture until OD600 reaches the range of 0.5-0.7.<br /> | ||
+ | 4. Add 3 uL arabinose (10%) to the culture.<br /> | ||
+ | 5. Incubate the culture 3 hours.<br /> | ||
+ | 6. Measure GFP fluorescence.</p> | ||
+ | |||
+ | |||
+ | <h4>Positive feedback</h4> | ||
+ | <p>Material<br /> | ||
+ | Strain: MG1655<br /> | ||
+ | Medium: M9<br /><br /> | ||
+ | Method<br /> | ||
+ | 1. Culture O/N.<br /> | ||
+ | 2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).<br /> | ||
+ | 3. Incubate the culture until OD600 reaches the range of 0.5-0.7.<br /> | ||
+ | 4. Add 3 uL arabinose (10%) to the culture.<br /> | ||
+ | 5. Culture 10 minute /1 hour.<br /> | ||
+ | 6. Centrifuge at 3200 rpm for 5 min.<br /> | ||
+ | 7. Throw away the supernatant.<br /> | ||
+ | 9. Measure GFP fluorescence.</p> | ||
+ | |||
+ | |||
+ | |||
+ | </div> | ||
+ | <div id = "Lab-3"> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/9/98/Sub_lab_note.png" class = "contTitle" /> | ||
+ | <table width="400" border="1" cellpadding="0" cellspacing="0" style="float:left;margin-left:30px;"> | ||
+ | <col width="9"> | ||
+ | <col width="36" span="7"> | ||
+ | <col width="40"> | ||
+ | <tr> | ||
+ | <td colspan="7" align="center">Jul.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center">Mon.</td> | ||
+ | <td align="center">Tue.</td> | ||
+ | <td align="center">Wed.</td> | ||
+ | <td align="center">Thu.</td> | ||
+ | <td align="center">Fri.</td> | ||
+ | <td align="center">Sat.</td> | ||
+ | <td align="center">Sun.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center">1</td> | ||
+ | <td width="36" align="center">2</td> | ||
+ | <td width="36" align="center">3</td> | ||
+ | <td width="36" align="center">4</td> | ||
+ | <td align="center">5</td> | ||
+ | <td width="36" align="center">6</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center">7</td> | ||
+ | <td width="36" align="center">8</td> | ||
+ | <td width="36" align="center">9</td> | ||
+ | <td width="36" align="center">10</td> | ||
+ | <td width="36" align="center">11</td> | ||
+ | <td width="36" align="center">12</td> | ||
+ | <td width="36" align="center">13</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0714')">14</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0715')">15</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0716')">16</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0717')">17</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0718')">18</a></td> | ||
+ | <td width="36" align="center">19</td> | ||
+ | <td width="36" align="center">20</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center">21</td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0722')">22</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0723')">23</a></td> | ||
+ | <td width="36" align="center">24</td> | ||
+ | <td width="36" align="center">25</td> | ||
+ | <td width="36" align="center">26</td> | ||
+ | <td width="36" align="center">27</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0728')">28</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0729')">29</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0730')">30</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0731')">31</a></td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table width="400" border="1" cellpadding="0" cellspacing="0" style="float:left;margin-left:30px;"> | ||
+ | <col width="40"> | ||
+ | <col width="36" span="7"> | ||
+ | <col width="9"> | ||
+ | <col width="64"> | ||
+ | <tr> | ||
+ | <td colspan="7" align="center">Aug.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center">Mon.</td> | ||
+ | <td align="center">Tue.</td> | ||
+ | <td align="center">Wed.</td> | ||
+ | <td align="center">Thu.</td> | ||
+ | <td align="center">Fri.</td> | ||
+ | <td align="center">Sat.</td> | ||
+ | <td align="center">Sun.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0801')">1</a></td> | ||
+ | <td width="36" align="center">2</td> | ||
+ | <td width="36" align="center">3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0804')">4</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0805')">5</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0806')">6</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0807')">7</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0808')">8</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0809')">9</a></td> | ||
+ | <td width="36" align="center">10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0811')">11</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0812')">12</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0813')">13</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0814')">14</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0815')">15</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0816')">16</a></td> | ||
+ | <td width="36" align="center">17</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0818')">18</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0819')">19</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0820')">20</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0821')">21</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0822')">22</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0823')">23</a></td> | ||
+ | <td width="36" align="center">24</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0825')">25</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0826')">26</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0827')">27</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0828')">28</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0829')">29</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('0839')">30</a></td> | ||
+ | <td width="36" align="center">31</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table width="400" border="1" cellpadding="0" cellspacing="0" style="float:left;margin-left:30px;margin-top:30px;"> | ||
+ | <col width="36" span="7"> | ||
+ | <tr> | ||
+ | <td width="252" colspan="7" align="center">Sep.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center">Mon.</td> | ||
+ | <td align="center">Tue.</td> | ||
+ | <td align="center">Wed.</td> | ||
+ | <td align="center">Thu.</td> | ||
+ | <td align="center">Fri.</td> | ||
+ | <td align="center">Sat.</td> | ||
+ | <td align="center">Sun.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0901')">1</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0902')">2</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0903')">3</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0904')">4</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0905')">5</a></td> | ||
+ | <td align="center"><a href="Javascript:linkDate('0906')">6</a></td> | ||
+ | <td width="252" align="center">7</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0908')">8</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0909')">9</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0910')">10</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0911')">11</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0912')">12</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0913')">13</a></td> | ||
+ | <td width="252" align="center">14</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0915')">15</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0916')">16</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0917')">17</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0918')">18</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0919')">19</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0920')">20</a></td> | ||
+ | <td width="252" align="center">21</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0922')">22</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0923')">23</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0924')">24</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0925')">25</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0926')">26</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0927')">27</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0928')">28</a></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0929')">29</a></td> | ||
+ | <td width="252" align="center"><a href="Javascript:linkDate('0930')">30</a></td> | ||
+ | <td width="252" align="center"> </td> | ||
+ | <td width="252" align="center"> </td> | ||
+ | <td width="252" align="center"> </td> | ||
+ | <td width="252" align="center"> </td> | ||
+ | <td width="252" align="center"> </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table width="400" border="1" cellpadding="0" cellspacing="0" style="float:left;margin-left:30px;margin-top:30px;"> | ||
+ | <col width="36" span="7"> | ||
+ | <tr> | ||
+ | <td colspan="7" align="center">Oct.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center">Mon.</td> | ||
+ | <td align="center">Tue.</td> | ||
+ | <td align="center">Wed.</td> | ||
+ | <td align="center">Thu.</td> | ||
+ | <td align="center">Fri.</td> | ||
+ | <td align="center">Sat.</td> | ||
+ | <td align="center">Sun.</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1001')">1</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1002')">2</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1003')">3</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1004')">4</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1005')">5</a></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1006')">6</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1007')">7</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1008')">8</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1009')">9</a></td> | ||
+ | <td width="36" align="center"><a href="Javascript:linkDate('1010')">10</a></td> | ||
+ | <td width="36" align="center">11</td> | ||
+ | <td width="36" align="center">12</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center">13</td> | ||
+ | <td width="36" align="center">14</td> | ||
+ | <td width="36" align="center">15</td> | ||
+ | <td width="36" align="center">16</td> | ||
+ | <td width="36" align="center">17</td> | ||
+ | <td width="36" align="center">18</td> | ||
+ | <td width="36" align="center">19</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center">20</td> | ||
+ | <td width="36" align="center">21</td> | ||
+ | <td width="36" align="center">22</td> | ||
+ | <td width="36" align="center">23</td> | ||
+ | <td width="36" align="center">24</td> | ||
+ | <td width="36" align="center">25</td> | ||
+ | <td width="36" align="center">26</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="36" align="center">27</td> | ||
+ | <td width="36" align="center">28</td> | ||
+ | <td width="36" align="center">29</td> | ||
+ | <td width="36" align="center">30</td> | ||
+ | <td width="36" align="center">31</td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | <td width="36" align="center"> </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
<div id="0714"><h3>7,14,2014</h3></div> | <div id="0714"><h3>7,14,2014</h3></div> | ||
<h4>Lab member</h4> <p>Yoshikawa,Nakashima</p> | <h4>Lab member</h4> <p>Yoshikawa,Nakashima</p> | ||
Line 47: | Line 1,146: | ||
B-10 #1 #2<br> | B-10 #1 #2<br> | ||
<i>E. coli</i> JM109(for competent cell)<br> | <i>E. coli</i> JM109(for competent cell)<br> | ||
- | |||
#:colony number</p> | #:colony number</p> | ||
<br> | <br> | ||
Line 87: | Line 1,185: | ||
B-10 #3, A-4</p> | B-10 #3, A-4</p> | ||
<br> | <br> | ||
- | + | <div id="0723"><h3>7,23,2014</h3></div> | |
<h4>Lab member</h4><p>Yoshikawa,Nakashima</p> | <h4>Lab member</h4><p>Yoshikawa,Nakashima</p> | ||
<br> | <br> | ||
Line 103: | Line 1,201: | ||
<br> | <br> | ||
<h4>Contents</h4> | <h4>Contents</h4> | ||
- | <h5>digestion,gel extraction</h5>< | + | <h5>digestion,gel extraction</h5><p> |
A-6 SP, B-10 XP:disposed<br> | A-6 SP, B-10 XP:disposed<br> | ||
100bp Ladder, A-6 SP, B-10 XP, NC<br> | 100bp Ladder, A-6 SP, B-10 XP, NC<br> | ||
Line 139: | Line 1,237: | ||
No contamination in Dye.</p> | No contamination in Dye.</p> | ||
<br> | <br> | ||
- | + | <div id="0730"><h3>7,30,2014</h3></div> | |
<h4>Lab member</h4><p>Yoshikawa,Nakashima</p> | <h4>Lab member</h4><p>Yoshikawa,Nakashima</p> | ||
<br> | <br> | ||
Line 283: | Line 1,381: | ||
C-7 (A-6 SP + B-10 XP)<br> | C-7 (A-6 SP + B-10 XP)<br> | ||
<br> | <br> | ||
- | </p><h5>Cut check</h5> (O/N)<br> | + | </p><h5>Cut check</h5><p> (O/N)<br> |
(enzyme-buffer) | (enzyme-buffer) | ||
S-B, S-H*, S-M*, P*-FD, E-FD<br> | S-B, S-H*, S-M*, P*-FD, E-FD<br> | ||
Line 318: | Line 1,416: | ||
OK!(low concentration)<br> | OK!(low concentration)<br> | ||
<br> | <br> | ||
- | </p><h5>making gel</h5> | + | </p><h5>making gel</h5><p>200ml |
- | + | ||
</p><div id="0809"><h3>8,9,2014</h3></div> | </p><div id="0809"><h3>8,9,2014</h3></div> | ||
<h4>Lab member</h4><p>Yoshikawa<br> | <h4>Lab member</h4><p>Yoshikawa<br> | ||
Line 515: | Line 1,612: | ||
E-18 (made glycerol stock)<br> | E-18 (made glycerol stock)<br> | ||
<br> | <br> | ||
- | </p><h5>digestion</h5> < | + | </p><h5>digestion</h5> <p> |
A-8 XP, B-1 #1,2,4 SP<br> | A-8 XP, B-1 #1,2,4 SP<br> | ||
→Today, sequences of these dna proved to be wrong, so we disposed them.<br> | →Today, sequences of these dna proved to be wrong, so we disposed them.<br> | ||
Line 543: | Line 1,640: | ||
<br> | <br> | ||
</p><div id="0821"><h3>8,21,2014</h3></div> | </p><div id="0821"><h3>8,21,2014</h3></div> | ||
- | <h4>Lab member</h4 | + | <h4>Lab member</h4><p>Yoshikawa,Nakashima</p> |
<br> | <br> | ||
- | + | <h4>Contents</h4><p> | |
</p><h5>digestion → gel extraction</h5><p> | </p><h5>digestion → gel extraction</h5><p> | ||
pSB1C3(A-4), A-6, B-3(We did not extract.), A-6'(NEB buffer)<br> | pSB1C3(A-4), A-6, B-3(We did not extract.), A-6'(NEB buffer)<br> | ||
Line 738: | Line 1,835: | ||
PCR:failed<br> | PCR:failed<br> | ||
<br> | <br> | ||
- | </p><h5>sequence</h5> | + | </p><h5>sequence order</h5><p> |
E-23, K-1, K-2~5<br> | E-23, K-1, K-2~5<br> | ||
<br> | <br> | ||
Line 787: | Line 1,884: | ||
OK!<br> | OK!<br> | ||
<br> | <br> | ||
- | </p><h5>Ligation</h5> < | + | </p><h5>Ligation</h5> <p> |
G-5 (E-6 ES + E-18 EX), M-1~4(K-2~5 EX + L-1~4 ES)<br> | G-5 (E-6 ES + E-18 EX), M-1~4(K-2~5 EX + L-1~4 ES)<br> | ||
<br> | <br> | ||
Line 1,014: | Line 2,111: | ||
</p><h5>ligation → TF</h5><p> | </p><h5>ligation → TF</h5><p> | ||
O-1 (N-1 ES + K-2 EX), O-2 (N-2 ES + K-3 EX), O-4 (N-4 ES + K-5 EX), O-5 (N-5 ES + K-3 EX)<br> | O-1 (N-1 ES + K-2 EX), O-2 (N-2 ES + K-3 EX), O-4 (N-4 ES + K-5 EX), O-5 (N-5 ES + K-3 EX)<br> | ||
- | O-6 (N-6 ES + K-5 EX), B-2 (B-2 linear XP (9/8 | + | O-6 (N-6 ES + K-5 EX), B-2 (B-2 linear XP (9/8 PCR) + pSB1C3 XP)<br> |
B-2' (B-2 linear XP + pSB1C3 XP), D-9, B-7 <br> | B-2' (B-2 linear XP + pSB1C3 XP), D-9, B-7 <br> | ||
- | |||
</p><h5>preculture</h5><p> | </p><h5>preculture</h5><p> | ||
D-5, D-6, N-3, E-21, A-3, K-4<br> | D-5, D-6, N-3, E-21, A-3, K-4<br> | ||
Line 1,196: | Line 2,292: | ||
A-4, A-6, A-8, C-3 #1, A-1 CP #1, E-12 CP #1, E-15 CP #1, E-20 CP #3, E-6 CP #1 <br> | A-4, A-6, A-8, C-3 #1, A-1 CP #1, E-12 CP #1, E-15 CP #1, E-20 CP #3, E-6 CP #1 <br> | ||
<br> | <br> | ||
- | </p><div id="0913" | + | </p><div id="0913"><h3>9,13,2014</h3></div> |
<h4>Lab member</h4><p>Yoshikawa<br> | <h4>Lab member</h4><p>Yoshikawa<br> | ||
<br> | <br> | ||
Line 1,329: | Line 2,425: | ||
E-2, E-19 #1~4<br> | E-2, E-19 #1~4<br> | ||
E-3, H-5 :No colony<br> | E-3, H-5 :No colony<br> | ||
- | <img src="https://static.igem.org/mediawiki/2014/d/de/IMGP0225_20140919_3.JPG"/> | + | <img src="https://static.igem.org/mediawiki/2014/d/de/IMGP0225_20140919_3.JPG"/><br> |
<br> | <br> | ||
</p><h5>ligation → TF</h5><p> | </p><h5>ligation → TF</h5><p> | ||
Line 1,472: | Line 2,568: | ||
<br> | <br> | ||
</p><div id="0927"><h3>9,27,2014</h3></div> | </p><div id="0927"><h3>9,27,2014</h3></div> | ||
- | <h4>Lab member</h4 | + | <h4>Lab member</h4><p>Yoshikawa,Nakashima</p> |
- | + | <h4>Contents</h4><p> | |
- | + | ||
</p><h5>TF</h5><p> | </p><h5>TF</h5><p> | ||
E-3(chemical)<br> | E-3(chemical)<br> | ||
Line 1,547: | Line 2,642: | ||
<br> | <br> | ||
</p><div id="1001"><h3>10,1,2014</h3></div> | </p><div id="1001"><h3>10,1,2014</h3></div> | ||
- | <h4>Lab member</h4><p>Nakashima,Tara,Nakamura,Takemura< | + | <h4>Lab member</h4><p>Nakashima,Tara,Nakamura,Takemura</p> |
<br> | <br> | ||
- | + | <h4>Contens</h4><br> | |
- | </ | + | <h5>miniprep</h5><p> |
H-5CP,G-5CP,J-5(made glycerol stock)<br> | H-5CP,G-5CP,J-5(made glycerol stock)<br> | ||
<br> | <br> | ||
Line 1,659: | Line 2,754: | ||
H-1deg,H-4deg#1,G-1eg,G-4deg<br> | H-1deg,H-4deg#1,G-1eg,G-4deg<br> | ||
<br> | <br> | ||
- | </p><h5>preculture</h5>(M9)< | + | </p><h5>preculture</h5>(M9)<p> |
E-15CP,E-17,E-18CP,I-2,F-1,2,3,4,Z-1<br> | E-15CP,E-17,E-18CP,I-2,F-1,2,3,4,Z-1<br> | ||
<br> | <br> | ||
Line 1,689: | Line 2,784: | ||
1h:0.074<br> | 1h:0.074<br> | ||
2h:0.073<br> | 2h:0.073<br> | ||
- | + | </p><h5>assay1</h5><p>(tentative)<br> | |
- | </p><h5>assay1</h5>(tentative)<br> | + | |
We measured the fluorescence of F-1,F-2,Z-1(culture in 20mL).<br> | We measured the fluorescence of F-1,F-2,Z-1(culture in 20mL).<br> | ||
Ex:501nm<br> | Ex:501nm<br> | ||
F-2:We observed a peak in 511nm.<br> | F-2:We observed a peak in 511nm.<br> | ||
F-1,Z-1:No peak<br> | F-1,Z-1:No peak<br> | ||
- | |||
</p><h5>preculture</h5><p> | </p><h5>preculture</h5><p> | ||
F-1,F-2,F-3,F-4,E-15CP,I-2,Z-1,E-17,E-18CP(M9 medium)<br> | F-1,F-2,F-3,F-4,E-15CP,I-2,Z-1,E-17,E-18CP(M9 medium)<br> | ||
Line 1,760: | Line 2,853: | ||
G-1deg,G-4deg,H-1deg,H-4deg<br> | G-1deg,G-4deg,H-1deg,H-4deg<br> | ||
<br> | <br> | ||
- | </p><h5>TF</h5>(electroporation)<br> | + | </p><h5>TF</h5><p>(electroporation)<br> |
F-1,F-2,F-3,F-4,E-17,E-18CP,Z-1,I-2,E-15<br> | F-1,F-2,F-3,F-4,E-17,E-18CP,Z-1,I-2,E-15<br> | ||
G-1deg,G-4deg,H-1deg,h-4deg,J-4,J-4<br> | G-1deg,G-4deg,H-1deg,h-4deg,J-4,J-4<br> | ||
also,2mL culture as recovery.<br> | also,2mL culture as recovery.<br> | ||
- | |||
</p><div id="1009"><h3>10,9,2014</h3></div> | </p><div id="1009"><h3>10,9,2014</h3></div> | ||
<h4>Lab member</h4><p>Yoshiakwa,Nakashima,Tara</p> | <h4>Lab member</h4><p>Yoshiakwa,Nakashima,Tara</p> | ||
Line 1,800: | Line 2,892: | ||
</p> | </p> | ||
<h5>making M9 medium</h5> | <h5>making M9 medium</h5> | ||
+ | </div> |
Latest revision as of 00:39, 18 October 2014
<img src="" class = "contTitle" />
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<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461001" abp="64">BBa_K1461001</A> | Regulatory | ecf20 promoter | Takefumi Yoshikawa | 80 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461002" abp="79">BBa_K1461002</A> | Regulatory | ecf11 promoter | Takefumi Yoshikawa | 80 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461003" abp="94">BBa_K1461003</A> | RNA | taRNA | Takefumi Yoshikawa | 71 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461004" abp="109">BBa_K1461004</A> | Coding | ecf20 | Takefumi Yoshikawa | 582 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461005" abp="124">BBa_K1461005</A> | Coding | ecf11 | Takefumi Yoshikawa | 609 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461006" abp="139">BBa_K1461006</A> | Coding | anti ecf20 | Takefumi Yoshikawa | 432 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461007" abp="154">BBa_K1461007</A> | Coding | anti ecf11 | Takefumi Yoshikawa | 663 |
Other Pars
Name | Type | Description | Designer | Length | |
---|---|---|---|---|---|
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461008" abp="194">BBa_K1461008</A> | Coding | GFP (AAV tag +) | Takefumi Yoshikawa | 742 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461009" abp="209">BBa_K1461009</A> | Coding | GFP (AAV tag +) | Takefumi Yoshikawa | 742 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461200" abp="329">BBa_K1461200</A> | Composite | taRNA (+d.term) | Takefumi Yoshikawa | 208 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461201" abp="344">BBa_K1461201</A> | Composite | ecf20 (+RBS, +d.term) | Takefumi Yoshikawa | 737 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461202" abp="359">BBa_K1461202</A> | Composite | ecf11 (+RBS, +d.term) | Takefumi Yoshikawa | 764 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461203" abp="374">BBa_K1461203</A> | Composite | cr-ecf20 (+RBS, +d.term) | Takefumi Yoshikawa | 777 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461204" abp="389">BBa_K1461204</A> | Composite | cr-ecf11 (+RBS, +d.term) | Takefumi Yoshikawa | 804 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461205" abp="404">BBa_K1461205</A> | Composite | cr-GFP (+RBS, +d.term) | Takefumi Yoshikawa | 915 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461206" abp="419">BBa_K1461206</A> | Composite | anti ecf20 (+RBS, +d.term) | Takefumi Yoshikawa | 587 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461207" abp="434">BBa_K1461207</A> | Composite | anti ecf11 (+RBS, +d.term) | Takefumi Yoshikawa | 818 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461300" abp="959">BBa_K1461300</A> | Composite | RBS-GFP-4miR-142-3p bindng sites-d.term | Shunsuke Sumi | 1007 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461301" abp="974">BBa_K1461301</A> | Composite | RBS-GFP-4 miR-142-5p bindng sites-d.term | Shunsuke Sumi | 999 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461302" abp="989">BBa_K1461302</A> | Composite | RBS-GFP-miR 142 3p non-binding site-d.term | Shunsuke Sumi | 1001 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461303" abp="1004">BBa_K1461303</A> | Composite | RBS-GFP-miR 142 5p non-binding site-d.term | Shunsuke Sumi | 1007 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461304" abp="1019">BBa_K1461304</A> | Composite | RBS-GFP-2miR 142 3p bindng sites-2miR 142 5p bindng sites-d.term | Shunsuke Sumi | 1003 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461305" abp="1034">BBa_K1461305</A> | Composite | RBS-GFP-2miR 142 3p non-bindng sites-2miR 142 5p non-bindng sites-d.term | Shunsuke Sumi | 1003 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461208" abp="449">BBa_K1461208</A> | Generator | taRNA (arabinose-induced) (+d.term) | Takefumi Yoshikawa | 346 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461209" abp="464">BBa_K1461209</A> | Generator | arabinose-induced ecf20 generator | Takefumi Yoshikawa | 875 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461210" abp="479">BBa_K1461210</A> | Generator | constitutive ecf20 generator | Takefumi Yoshikawa | 780 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461211" abp="494">BBa_K1461211</A> | Generator | arabinose-induced ecf11 generator | Takefumi Yoshikawa | 902 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461212" abp="509">BBa_K1461212</A> | Generator | constitutive ecf11 generator | Takefumi Yoshikawa | 807 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461213" abp="524">BBa_K1461213</A> | Generator | arabinose-induced cr-ecf20 generator | Takefumi Yoshikawa | 915 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461214" abp="539">BBa_K1461214</A> | Generator | constitutive cr-ecf20 generator | Takefumi Yoshikawa | 820 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461215" abp="554">BBa_K1461215</A> | Generator | arabinose-induced cr-ecf11 generator | Takefumi Yoshikawa | 942 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461216" abp="569">BBa_K1461216</A> | Generator | constitutive cr-ecf11 generator | Takefumi Yoshikawa | 847 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461217" abp="584">BBa_K1461217</A> | Generator | arabinose-induced cr-GFP generator | Takefumi Yoshikawa | 1053 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461218" abp="599">BBa_K1461218</A> | Generator | constitutive cr-GFP generator | Takefumi Yoshikawa | 958 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461219" abp="614">BBa_K1461219</A> | Generator | ecf20-induced GFP generator | Takefumi Yoshikawa | 963 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461220" abp="629">BBa_K1461220</A> | Generator | ecf11-induced GFP generator | Takefumi Yoshikawa | 963 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461221" abp="644">BBa_K1461221</A> | Generator | ecf20 generator (positive feedback) | Takefumi Yoshikawa | 825 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461222" abp="659">BBa_K1461222</A> | Generator | ecf11 generator (positive feedback) | Takefumi Yoshikawa | 852 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461223" abp="674">BBa_K1461223</A> | Generator | anti ecf20 generator (pLac) | Takefumi Yoshikawa | 795 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461224" abp="689">BBa_K1461224</A> | Generator | anti ecf11 generator (pLac) | Takefumi Yoshikawa | 1026 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461225" abp="704">BBa_K1461225</A> | Measurement | ecf20 promoter measurement system | Takefumi Yoshikawa | 1846 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461226" abp="719">BBa_K1461226</A> | Measurement | ecf11 promoter measurement system | Takefumi Yoshikawa | 1873 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461231" abp="794">BBa_K1461231</A> | Measurement | arabinose-induced GFP and taRNA generator | Takefumi Yoshikawa | 1407 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461232" abp="809">BBa_K1461232</A> | Measurement | single counter | Takefumi Yoshikawa | 1312 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461233" abp="824">BBa_K1461233</A> | Measurement | ecf20 promoter mesurement system (positive feedback) | Takefumi Yoshikawa | 2679 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461234" abp="839">BBa_K1461234</A> | Measurement | ecf11 promoter mesurement system (positive feedback) | Takefumi Yoshikawa | 2733 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461235" abp="854">BBa_K1461235</A> | Measurement | resettable counter device using ecf20 (w/o crRBS, taRNA) | Takefumi Yoshikawa | 3482 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461236" abp="869">BBa_K1461236</A> | Measurement | resettable counter device using ecf11 (w/o crRBS, taRNA) | Takefumi Yoshikawa | 3767 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461237" abp="884">BBa_K1461237</A> | Measurement | sigma factors cross-talk assay 1 | Takefumi Yoshikawa | 1873 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461238" abp="899">BBa_K1461238</A> | Measurement | sigma factors cross-talk assay 2 | Takefumi Yoshikawa | 1846 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461227" abp="734">BBa_K1461227</A> | Project | resettable single counter system using ecf20 | Takefumi Yoshikawa | 2671 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461228" abp="749">BBa_K1461228</A> | Project | reset function using ecf20 | Takefumi Yoshikawa | 2576 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461229" abp="764">BBa_K1461229</A> | Project | resettable single counter system using ecf11 | Takefumi Yoshikawa | 2834 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461230" abp="779">BBa_K1461230</A> | Project | reset function using ecf11 | Takefumi Yoshikawa | 2929 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461239" abp="914">BBa_K1461239</A> | Project | σ-Re Counter (double, using ecf20) | Takefumi Yoshikawa | 3821 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461240" abp="929">BBa_K1461240</A> | Project | σ-Re Counter (double, using ecf11) | Takefumi Yoshikawa | 4106 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461241" abp="944">BBa_K1461241</A> | Project | σ-Re Counter (triple) | Takefumi Yoshikawa | 6615 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461104" abp="284">BBa_K1461104</A> | Regulatory | EpCAM promoter | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461105" abp="299">BBa_K1461105</A> | Regulatory | EpCAM promoter(mutant) | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461100" abp="224">BBa_K1461100</A> | RNA | miR-142-3p target binding site | ドリキャス? | 25 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461101" abp="239">BBa_K1461101</A> | RNA | miR-142-5p target bindng site | Shunsuke Sumi | 23 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461102" abp="254">BBa_K1461102</A> | RNA | miRNA-142 binding site control1 | Shunsuke Sumi | 23 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461103" abp="269">BBa_K1461103</A> | RNA | miRNA-142 binding site control2 | Shunsuke Sumi | 25 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461306" abp="1049">BBa_K1461306</A> | Translational_Unit | pCMV-RBS-GFP-4 miR 142 3p site-d.term | Shunsuke Sumi | 1595 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461307" abp="1064">BBa_K1461307</A> | Translational_Unit | pCMV-RBS-GFP-4 miR 142 5p site-d.term | Shunsuke Sumi | 1587 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461308" abp="1079">BBa_K1461308</A> | Translational_Unit | pCMV-RBS-GFP-4 miR 142 3p non-binding sites-d.term | Shunsuke Sumi | 1589 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461309" abp="1094">BBa_K1461309</A> | Translational_Unit | pCMV-RBS-GFP-4 miR 142 5p non-bindgin sites-d.term | Shunsuke Sumi | 1595 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461310" abp="1109">BBa_K1461310</A> | Translational_Unit | pCMV-RBS-GFP-2 miR 142 3p bindgin sites-2 miR 142 5p binding site-d.term | Shunsuke Sumi | 1591 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461311" abp="1124">BBa_K1461311</A> | Translational_Unit | pCMV-RBS-GFP-2 miR 142 3p non-bindgin sites-2 miR 142 5p non-binding site-d.term | Shunsuke Sumi | 1591 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461312" abp="1139">BBa_K1461312</A> | Translational_Unit | pEpCAM-RBS-GFP-4 miR 142 3p site-d.term | Shunsuke Sumi | 738 | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461313" abp="1154">BBa_K1461313</A> | Translational_Unit | pEpCAM-RBS-GFP-4 miR 142 5p site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461314" abp="1169">BBa_K1461314</A> | Translational_Unit | pEpCAM-RBS-GFP-4 miR 142 3p non-bindng site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461315" abp="1184">BBa_K1461315</A> | Translational_Unit | pEpCAM-RBS-GFP-4 miR 142 5p non-bindng site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461316" abp="1199">BBa_K1461316</A> | Translational_Unit | pEpCAM-RBS-GFP-2 miR 142 3p bindgin sites-2 miR 142 5p binding site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461317" abp="1214">BBa_K1461317</A> | Translational_Unit | pEpCAM-RBS-GFP-2 miR 142 3p non-bindgin sites-2 miR 142 5p non-binding site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461318" abp="1229">BBa_K1461318</A> | Translational_Unit | pEpCAM(mutant)-RBS-GFP-4 miR 142 3p site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461319" abp="1244">BBa_K1461319</A> | Translational_Unit | pEpCAM(mutant)-RBS-GFP-4 miR 142 5p site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461320" abp="1259">BBa_K1461320</A> | Translational_Unit | pEpCAM(mutant)-RBS-GFP-4 miR 142 3p non-bindng site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461321" abp="1274">BBa_K1461321</A> | Translational_Unit | pEpCAM(mutant)-RBS-GFP-4 miR 142 5p non-bindng site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461322" abp="1289">BBa_K1461322</A> | Translational_Unit | pEpCAM(mutant)-RBS-GFP-2 miR 142 3p bindgin sites-2 miR 142 5p binding site-d.term | Shunsuke Sumi | ? | |
<A href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1461323" abp="1304">BBa_K1461323</A> | Translational_Unit | pEpCAM(mutant)-RBS-GFP-2 miR 142 3p non-bindgin sites-2 miR 142 5p non-binding site-d.term | Shunsuke Sumi | ? |
<img src="" class = "contTitle" />
DNA construction
Transformation
Method
1. Put the competent cell on ice and leave it until dissoloved.
2. Add DNA 10 μL to competent cell 100 μL on 2 ml tube.
3. Place on ice for 30 min.
4. Heatshock at 42℃ for 45 sec.
5. Place the tube on ice for 3 min.
6. Add 1000 μL of LB medium and place tube on 37℃ for 30 min.
7. Plate 1000 μL of the medium and spread well.
8. Incubate the plate on 37℃ over night.
Electrophoresis
Method
1. Add agarose to 50 ml or 25ml of 1xTAE buffer in Erlenmeyer flask per 1 gel plate. The concentration of gel is 1% for over 1kbp of DNA and use 2% to under 1kbp.
2. Wrap the top of Erlenmeyer Flask not to completely seal up.
3. Heat it by microwaves until the solution gets transparent.
4. Pour it into a gel maker and set a comb before gelling.
5. After gelling, remove the comb carefully not to break well.
6. Place the gel into tank for electrophoresis and fill 1xTAE up to over the level of gel.
7. Add 1 μl of 10xLoading buffer into 10 μl of DNA solution and vortex it.
8. Apply 11 μl of sample and 6 μl of ladder solution in each well.
9. Electrophoresis at 100 V for 20-30 min.
10. The band of bromophenol blue reaches 80% of the gel, stop electrophoresis and salvage the gel.
11. Check the band under blue light.
Colony PCR
Method
1. Mix DNA solution and reagent as follows.
(Add10xF-universal Primer and 10xR-Univarsal Primer at a final concentration of 5 μM. Then add 2xGoTaqMix and MillQ.)
2. Dispense it to each PCR tube for 10 μl on ice.
3. Pick up single colony on plate and dip to the tube.
4. Set to Thermal cycler. (95℃ 5 min, 95℃ 30 sec, 53℃ 30 sec, 72℃ 30-180 sec (step 2 - 4 repeated 30 times), 72℃ 3 min)
5.Check the length of DNA by Electrophoresis.
Miniprep
Material
WizardR Plus SV Minipreps DNA Purification System (promega)
Method
1. Pour 3 ml of LB broth to test tube.
2. Pick up a single colony and put it into the tube.
3. Incubate it at 37℃ for 12~16 hours with the tube shaking.
4. Transfer 1.5 ml of culture fluid to 1.5 ml tube.
5. Centrifuge at 15000 rpm for 1 min.
6. Throw away the supernatant
7. add the other 1.0 ml of culture.
8. Centrifuge at 15000 rpm for 1 min.
9. Throw away the supernatant
10. Add 250 μl of Cell-Resuspension Sol and Vortex it until precipitation dissolved.
11. Add 250 μl of Cell-Lysis Sol and invert it not to make bubble.
12. Add 10 μl of Alkaline Protease and invert it not to make bubble
13. Leave it for 3 min at room temperature.
14. Add 350 μl of Neutralization Sol and invert it not to make bubble.
15. Centrifuge at 15000 rpm 10 min.
14. Set a collection tube on column and apply the supernatant to it.
15. Centrifuge at15000 rpm for 1 min.
16. Add 750 μl of Column Wash Sol and Centrifuge for 1 min at 15000 rpm.
17. Remove the flow through.
18. Add 250 μl of Column Wash Sol and Centrifuge for 1 min at 15000 rpm.
19. Remove the flow through.
20. Centrifuge for 2 min at 15000 rpm to dry the column.
21. Transfer the column to another 1.5 ml tube.
22. Add 50 μl of nuclease-free water and leave it for 1 min at room temperature.
23. Centrifuge for 1 min at 15000 rpm.
24. Measure concentration of the flow though liquid.
Digestion
Material
The restriction enzymes (EcoRⅠ, XbaⅠ, SpeⅠ and PstⅠ) are purchased or provided as support for iGEM Japan from Promega.
Method
1. Mix DNA solution and reagent as follows.(unit μl)
2. Incubate for 2 hours at 37℃.
3. Add 2 μl of 10x Loading Buffer and Electrophoresis and Gel Extraction.
Gel extraction
Method
1. After electrophoresis, slice the band and put the gel slice into 1.5 ml tube.
2. Add 750 μl of Membrane Bind Sol and stand at 60℃ (Vortex every 2 min)
3. Apply to column-set collection tube and Centrifuge for 1 min at 15000 rpm.
4. Add 750 μl of Membrane Wash Sol to the column.
5. Centrifuge for 1 min and remove the flow through.
6. Add 500 μl of Membrane Wash Sol to the column.
7. Centrifuge for 1 min and remove the flow through.
8. Centrifuge for 2 min to dry the column.
9. Transfer the column to another 1.5 ml tube.
10. Add 20 μl of nuclease-free water and leave it for 1 min at room temperature.
11. Centrifuge for 1 min at 15000 rpm.
12. Measure concentration of the flow though liquid.
Ligation
Method
1. Calculate the mass ratio of Insert DNA to Vector DNA to equal
2. Mix the DNA solution and reagent as follows.
3. Stand it for 15 min at room temperature.
Assay method
Influence on growth of E. coli
Material
Strain: JM109
Medium: LB
Method
1. Culture O/N.
2. Take 30 uL of overnight culture into 3 mL LB medium (containing 50 ug/mL CP).
3. Incubate the culture at 37℃ and measure OD600 evry a hour.
Sigma factor and its crresponding promoter
Material
Strain: MG1655
Medium: M9
Method
1. Culture O/N.
2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).
3. Incubate the culture until OD600 reaches the range of 0.45-0.95.
4. Add 3 uL arabinose (10%) to the culture.
5. Incubate the culture 3 hours.
6. Measure GFP fluorescence.
Reset function
Material
Strain: MG1655
Medium: M9
Method
1. Culture O/N.
2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).
3. Incubate the culture until OD600 reaches the range of 0.5-0.7.
4. Add 3 uL arabinose (10%) to the culture.
5. Incubate the culture 3 hours.
6. Measure GFP fluorescence.
7. Add 100mM IPTG 15 uL.
8. Incubate O/N.
9. Measure GFP fluorescence.
Riboregulator
Material
Strain: JM109
Medium: LB
Method
1. Culture O/N.
2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).
3. Incubate the culture until OD600 reaches the range of 0.5-0.7.
4. Add 3 uL arabinose (10%) to the culture.
5. Incubate the culture 3 hours.
6. Measure GFP fluorescence.
Positive feedback
Material
Strain: MG1655
Medium: M9
Method
1. Culture O/N.
2. Take 150 uL of overnight culture into 3 mL M9 medium (containing 50 ug/mL CP).
3. Incubate the culture until OD600 reaches the range of 0.5-0.7.
4. Add 3 uL arabinose (10%) to the culture.
5. Culture 10 minute /1 hour.
6. Centrifuge at 3200 rpm for 5 min.
7. Throw away the supernatant.
9. Measure GFP fluorescence.
<img src="" class = "contTitle" />
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7,14,2014
Lab member
Yoshikawa,Nakashima
Contents
Making Plate Culture
Ampicillin *10
Chloramphenicol*6
7,15,2014
Lab member
Yoshikawa,Nakashima
Contents
Making DW 100mL
TF
4-17F(A-1), 4-4E(A-2), 3-19O(A-3), 3-4G(A-4), 4-1N(A-6), 3-3F(A-8), 4-13L(B-10)
7,16,2014
Lab member
Yoshikawa,Nakashima
Contents
A-2:No colony
TF
A-2(recovery)
preculture
A-1, A-3, A-4, A-6, A-8, B-10,Escherichia coli JM109(for competent cell)
7,17,2014
Lab member
Yoshikawa,Nakashima
Contents
A-2:There are something like colonies.
Making glycerol stock/miniprep
A-1, A-3, A-4, A-6, A-8
All samples:consentration is low.
B-10:disposed
making reagent
LB: 500mL
50mM CaCl2: 400mL
50mM CaCl2/ 20% glycerol: 200mL
preculture
A-1 #1
A-2 #1 #2
A-3 #1
A-4 #1
A-6 #1
A-8 #1
B-10 #1 #2
E. coli JM109(for competent cell)
- colony number
7,18,2014
Lab member
Yoshikawa,Nakashima
Contents
miniprep
A-1,A-3,A-6:from culture 2.5ml OK
A-4,A-8:from culture 1.5ml OK
A-2#1:made glycerol stock. Low consentration.
B-10#1:Low consentration.
A-2#2,B-10#2:did not grow
Making competent cell
100uL*120
making reagent
(2000×)Ampicillin 3mL (100mg/mL)
7,22,2014
Lab member
Yoshikawa,Nakashima
Contents
Cut check
A-4 (81ng/μL):ES Cut,XP cut.Checked in 1.5h, 2h, 2.5h, 3h:OK
Left:1kbp Ladder/A-4(Control)/ES 1.5h/ES 2h/ES 2.5h/ES 3h
Right:1kbp Ladder/A-4(Control)/XP 1.5h/XP 2h/XP 2.5h/XP 3h
<img src=""/>
TF
We measured cfu of competent cell we made.
We used Efficiency Kit (RFP Construct on pSB1C3)in distribution Kit.
TF
50pg, 20pg, 10pg, 5pg
competent cell:25uL
preculture
B-10 #3, A-4
7,23,2014
Lab member
Yoshikawa,Nakashima
Contents
plate check:Did not grow.
miniprep
A-4, B-10 #3(made glycerol stock):OK
Making plate
200ml,CP*10
7,28,2014
Lab member
Nakashima
Contents
digestion,gel extraction
A-6 SP, B-10 XP:disposed
100bp Ladder, A-6 SP, B-10 XP, NC
<img src=""/>
(wrote at 0731
A-6
band near 2kbp:SP cut or single cut
band near 1.5kbp:Plasmid)
colony PCR
A-6 #1, B-10 #1
1kbp Ladder, A-6, B-10, NC
<img src=""/>
A-6:OK,B-10:wrong
Measuring cfu
competent cell:50uL
7,29,2014
Lab member
Yoshikawa,Nakashima
Contents
Plate check:All Plates did not grow.
TF
B-10 by electroporation.
Measuring cfu
A-1:13,65,130pg
Electrophoresis check
1kbp Ladder, A-6(Plasmid), NC
<img src=""/>
There is band in 1500kbp,so 1500kbp in 0728 may be rest of cutting.
7,30,2014
Lab member
Yoshikawa,Nakashima
Contents
colony check
cfu:Did not grow
B-10:One colony
Cut check
We checked whether A-6 band in 0728 was rest of cutting.
colony PCR
B-10(from Plate made in 0729)
1kbp Ladder, 1.5h, 2h, 2.5h, B-10(colony PCR), NC
<img src=""/>
band near 800bp:RFP between Spe1 site and Pst1 site of A-1.
band near 2kbp:Backbone cut by SP cut
band near 3kbp:rest of cutting
1.5h:incompletely cut
2h,2.5h:OK
We decided 2h for digestion.
B-10:OK
preculture
B-10
7,31,2014
Lab member
Yoshikawa,Nakashima
Contents
miniprep
B-10 #1(from 140729 Plate)(made glycerol stock)
digestion,gel extraction
A-6 SP, B-10 XP
1kbp Ladder, A-6, B-10
<img src=""/>
B-10:incomplete cut
others:OK
ligation
C-7 (A-6 SP + B-10 XP)
8,1,2014
Lab member
Yoshikawa,Nakashima
Contents
TF
C-7(Chemical & EP)
ligation Check
PCR reaction primed with Universal Primer, using ligation products as template.
<img src=""/>
OK!
8,4,2014
Lab member
Yoshikawa,Nakashima
Contents
Plate check
No colony
digestion
A-6 SP, B-10 XP
Electrophoresis
1kbp Ladder, A-6, B-10
<img src=""/>
Incomplete cut.Disposed.
preculture
B-10
8,5,2014
Lab member
Yoshikawa,Nakashima
Contents
miniprep
B-10 →Sample Lost! Bye bye, GFP!
Cut check
SP(A-1), XP(A-1), EX(A-4), ES(A-4)
2h, 2.5h, 3h
Elrctrophoresis
1kbp Ladder, A-1, A-1 SP(2h, 2.5h, 3h), A-1 XP(2h,2.5h, 3h), A-4,
A-4 EX(2h, 2.5h 3h), A-4 ES(2h, 2.5h, 3h), None, 1kbp Ladder
<img src=""/>
Incomplete cut.
preculture
A-1, A-4, B-10
8,6,2014
Lab member
Yoshikawa
Contents
miniprep
A-1, A-4, B-10
digestion, gel extraction
A-6 SP, B-10 XP
1kbp Ladder, A-6, B-10
<img src=""/>
A-6:OK
B-10:Incomplete cut
<img src=""/>
We chenged restriction enzyme.
B-10 XP
<img src=""/>
OK!
<img src=""/>
making gel
200ml
ligation
C-7(A-6 SP + B-10 XP)
TF
4-11L, C-7
8,7,2014
Lab member
Yoshikawa,Nakashima,Tara,Itoh,Tsukada
Contents
colony PCR
C-7
<img src=""/>
<img src=""/>
All bands are self ligation of backbone.
digestion, gel extraction
A-6 SP, B-10 XP
1kbp Ladder, B-10, A-6
<img src=""/>
ligation
C-7 (A-6 SP + B-10 XP)
Cut check
(O/N)
(enzyme-buffer)
S-B, S-H*, S-M*, P*-FD, E-FD
- Takara's product
- Takara's product
8,8,2014
Lab member
Nakashima,Nakamura,Yamanaka,Yoshikawa(Fresh),Yoshikawa
Contents
Cut check sample Electrophoresis
1kbp Ladder, S-B, S-H*, S-M*, NC, E-FD, P*-FD
<img src=""/>
FD buffer is appropriate for SP cut.
digestion, gel extraction
A-6 SP, B-10 XP
<img src=""/>
<img src=""/>
OK!
ligation
C-7 (A-6 SP + B-10 XP)
TF
C-7,4-11L(culture in test tube)
overlap extension PCR →PCR clean up
1+2
anealing 57℃,extension 10 sec, 30 cycle.
100bp Ladder, Pecf11, Pecf20, crRBS, taRNA
<img src=""/>
OK!(low concentration)
making gel
200ml
8,9,2014
Lab member
Yoshikawa
Contents
Plate and test tube check
4-11L:OK!mixed with glycerol, and conserved in -80℃.
C-7:OK! conserved in refrigerator.
8,11,2014
Lab member
Yoshikawa,Nakashima,Yamanaka,Nakamura
Contents
colony PCR
C-7 #1~11
- 1~4, NC
<img src=""/>
- 5~11,NC
<img src=""/>
- 10 is OK!
overlap extension PCR →PCR clean up
Pecf11, Pecf20, crRBS, taRNA
(1+2)+3,PCR product
1kbp Ladder, Pecf11(1+2+3), Pecf20(1+2+3), crRBS(1+2+3)
taRNA(1+2+3), Pecf11(all), Pecf20(all), crRBS(all), taRNA(all)
<img src=""/>
Making Plate
Ampicillin*20
preculture
A-6, B-10, C-7 #10
8,12,2014
Lab member
Nakashima,Nakamura,Yamanaka,Yoshikawa(Fresh),Yoshikawa
Contents
miniprep
A-6, B-10, C-6 #10 (made glycerol stock)
digestion →gel extraction
A-8 EX, C-6 ES, pSB1A2(A-1) XP *2 sample, A-9 linear XP
A-10 linear XP, A-7 linear XP, B-1 linear XP
1kbp Ladder, A-1 XP, A-1 XP, A-8 EX, C-6 ES
<img src=""/>
C-6:wrong
A-1:OK!
colony PCR
4-11L
<img src=""/>
OK!
ligation →TF
A-9, A-10, A-7, B-1
Making reagent
LB 800ml
8,13,2014
Lab member
Yoshikawa,Nakashima,Tara,Nakamura,Takemura,Tsukada
Contents
miniprep
4-11L(made glycerol stock)
digestion→ gel extrction
A-8 EX, C-6 ES, A-6 SP, 4-11L XP
1kbp Ladder, A-6 SP, A-8 EX, C-6 ES, 4-11L XP
<img src=""/>
<img src=""/>
C-6:Incomplete cut
Backbone of 4-11L said to be pSB1A2, but ,actually,may be pSB1AK3.
ligation→TF
D-7 (4-11L XP + A-6 SP), D-7(C-6 ES + A-8 EX)
colony PCR
A-7 #1~2, A-9 #1~4, A-10 #1~4, B-1 #1~2 ,100bp Ladder
<img src=""/>
A-7 #1, A-10 #4:OK!
preculture
A-8, C-6, A-7 #1, A-10 #4
8,14,2014
Lab member
Yoshikawa,Nakashima,Tara,Takemura,Nakamura
Contents
miniprep
A-7 #1(made glycerol stock), A-10 #4(made glycerol stock), A-8, C-6
overlap extension PCR
Pecf 11, Pecf 20, crRBS, taRNA
(35 cycles, annealing in 59℃)
digestion → gel extranction
A-7 SP, 4-11L XP, pSB1A2 (B-10), A-7 linear XP
A-9 linear XP, A-10 linear XP, B-1 linear XP
1kbp Ladder, A-7 SP, 4-11L XP
<img src=""/>
<img src=""/>
OK!
A-10 XP, 100bp Ladder
<img src=""/>
OK!(low concentration)
100bp Ladder, pSB1A2(B-10), pSB1A2(B-10), A-7, A-9, B-1
<img src=""/>
<img src=""/>
Incomplete cut of pSB1A2 is weigh on our mind.
gel making
2% 25mL
1% 200mL
colony PCR
D-7(Ampicillin), D-7(Chloramphenicol)
1kbp Ladder, D-7(Amp) #1~4, D-7(CP) #1~4
<img src=""/>
ligation → TF
D-6 (A-7 SP + 4-11L XP), A-7 (linear XP + pSB1A2 XP)
A-9, A-10, B-1 (linear XP + pSB1A2 XP)
8,15,2014
Lab member
Yoshikawa,Nakashima,Tara,Takemura,Nakamura
Contents
miniprep
D-7 #3 (made glycerol stock)
digestion → gel extraction
A-10 SP, D-7 XP
<img src=""/>
<img src=""/>
colony PCR
A-7 #1~4, A-9 #1~4, A-10 #1~4, B-1 #1~4, D-6 #1~4
<img src=""/>
A-7 #3,4, A-10 #1,2,4, B-1 #1,2,4:OK!
D-6
<img src=""/>
OK!
ligation → TF
E-18 (A-10 SP + D-7 XP)
preculture
A-7 #3,4, A-10 #1,2,4, B-1 #1,2,4, D-6 #1
8,16,2014
Lab member
Yoshikawa
Contents
miniprep
A-7 #3,4, A-10 #1,2,4, B-1 #1,2,4, D-6 #1
(made glycerol stock)
8,18,2014
Lab member
Yoshikawa,Hiura
Contents
digestion → gel extraction
A-1 SP, A-2 SP, A-3 SP, D-6 XP *2, A-7 #3,4, B-10
<img src=""/>
sequence
A-7, A-7 #3,4, A-10, A-10 #1,2,4, B-1 #1,2,4
C-6 F, C-6 R, D-7 F, D-7 R, D-6 F, D-6 R
colony PCR
E-18 #1~3
<img src=""/>
OK!
ligation → TF
E-14 (A-3 SP + D-6 XP)
E-15 (A-1 SP + D-6 XP)
E-16 (A-2 SP + D-6 XP)
preculture
E-18 #1
8,19,2014
Lab member
Yoshikawa,Nakamura,Yamanaka,Yoshikawa(Fresh)
Contents
miniprep
E-18 (made glycerol stock)
digestion
A-8 XP, B-1 #1,2,4 SP
→Today, sequences of these dna proved to be wrong, so we disposed them.
making gel
2% gel:25ml
colony PCR
C-5, E-14, E-15,E-16
sequence
A-7:RBS
A-7 #3:none
A-7 #4:none
A-10:OK
B-1: all none
8,20,2014
Lab member
Yoshikawa,Nakamura,Tsukada,Yamanaka,Itoh
Contents
PCR
sigma11, sigma20, anti11, anti20
TF
1-21P
8,21,2014
Lab member
Yoshikawa,Nakashima
Contents
digestion → gel extraction
pSB1C3(A-4), A-6, B-3(We did not extract.), A-6'(NEB buffer)
<img src=""/>
colony PCR
A-2, A-3, A-4, 1-21P, NC
<img src=""/>
ligation → TF
B-3, C-2, C-2'
preculture
1-21P
8,22,2014
Lab member
Yoshikawa,Nakamura,Nakashima
Contents
miniprep
1-21P(made glycerol stock)
colony PCR
B-3, C-2, C-2
<img src=""/>
digestion → gel extraction
1-21P SP, D-7 XP, C-6 E, C-6 P, C-6(NC)
<img src=""/>
<img src=""/>
ligation → TF
K-1(1-21P SP + D-7 XP)
preculture
B-3 #1,4, D-7, C-2 #1,3, C-2' #3,4
8,23,2014
Lab member
Yoshikawa
Contents
miniprep
D-7, B-3 #1,4, C-2 #1,3, C-2' #3,4
8,25,2014
Lab member
Nakashima,Nakamura,Yamanaka,Hiura
Contents
digestion → gel extraction
A-8 EX *2, B-3 #1 ES, B-3 #4 ES, C-2 #1 ES, C-2 #3 ES
<img src=""/>
<img src=""/>
Plate making
Ampicillin*10, Chloramphenicol*20
colony PCR
K-1
<img src=""/>
- 1,4:OK!
sequence
B-3 #1,4, C-2 #1,3, C-2' #3,4, E-18, A-2, A-3
ligation → TF
D-3 1 (A-8 EX + C-2 #1 ES), D-3 2(A-8 EX + C-2 #3 ES)
C-10 1(A-8 EX + B-3 #1 ES), C-10 2(A-8 EX + B-3 #4 ES)
preculture
A-2, A-8, K-1 #1, C-2 #1,3, B-3 #1
8,26,2014
Lab member
Yoshikawa,Nakashima,Yamanaka,Takemura,Tsukada
Contents
miniprep
K-1(made glycerol stock), A-2, A-8, B-3 #1, C-2 #1, C-2 #3
colony PCR
D-3 (1), D-3 (2), C-10 (1), C-10 (2)
<img src=""/>
OK!(C-10(1)#4 may be a little shorter.)
digestion → gel extraction
K-2 linear EP, K-3 linear EP, K-4 limear EP, K-5 linear EP, pSB1C3 (A-4) EP
<img src=""/>
We forgot to take the photo before we sliced the band.
ligation → TF
K-2, K-3, K-4, K-5
preculture
D-3 #1, C-10 #1
sequence
A-2:E-X-S-S-Pconst(weak)-S-P wrong
sequence
A-3:OK
B-3 #1:OK
B-3 #4:OK
C-2 #1:OK
C-2 #3:OK
C-2' #3:point mutation *2
C-2' #4:OK
E-18:OK
8,27,2014
Lab member
Yoshikawa,Nakashima,Yoshikawa(fresh),Itoh,Tara,Nakamura
Contents
miniprep
D-3, C-10(made glycerol stock)
digestion → gel extraction
A-1 SP, A-3 SP, A-10 SP, D-3 XP *2
<img src=""/>
<img src=""/>
D-3 is a little strange.Contamination?
colony PCR
K-2~5 #1~4
- 100bp Ladder
<img src=""/>
500bp band:self ligation of backbone(A-4 200bop)
300bp band:If this band is blank vector, this band(EP cut) must be shorter than 300bp.
So, this band is OK!.
→K-2 #4, K-3 #1, K-4 #1,2, K-5 #2,3,4:OK!
ligation → TF
E-5(A-3 SP + D-3 XP), E-6(A-1 SP + D-3 XP), E-20(A-10 SP + D-3 XP)
preculture
E-15
D-3, C-10(Recovery)
K-2 #4, K-3 #1, K-5 #2
Remarks
<img src=""/>
We observed that pCMV expressed in Escherichia.coli.
Left:pCMV-GFP
Right:pConst(strong)-GFP
We may be able to carry out the characterization of pCMV and meet the gold medal requirement(parts implovement).
8,28,2014
Lab member
Yoshikawa,Nakashima,Itoh,Tara,Tsukada,Yamanaka
Contents
miniprep
K-2~5, E-23(made glycerol stock)
C-10, D-3
digestion →gel extraction
K-2 EX, K-3 EX, K-4 EX, K-5 EX, E-23 EP, C-6 ES *2, pSB1C3(A-4) EP, pSB1C3(A-4) XP
<img src=""/>
<img src=""/>
→pSB1C3 XP:keep in freezer
overlap extension PCR
A-7, A-9, B-1, B-2, D-8, D-9
check & colony PCR
check:E-5, E-6
colony PCR:(E-5 #1~4, E-6 #1~4, NC), A-7, A-9, D-8, B-1, B-2, D-9
<img src=""/>
A-7, A-9, B-1, D-8:OK!
B-2, D-9:Needs retry in higher concentration.
E-5 #2~4, E-6:OK!
ligation → TF
E-23'(E-23 EP + pSB1C3 EP), L-1~4(C-6 ES + K-2~5 EX)
8,29,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Tara,Tsukada,Yamanaka
Contents
miniprep
E-5(made glycerol stock)
A-4, C-6
E-6:No colony
digestion →gel extraction
A-7 linear XP, A-9 linear XP, A-10 SP, B-1 linear XP, D-3 XP, D-8 linear XP, E-5 SP, E-18 XP
<img src=""/>
<img src=""/>
PCR
B-2, D-9(retry)
check & colony PCR
E-23' #1~4, B-2, D-9
<img src=""/>
L-1~4
<img src=""/>
E-23 #1, L-1 #2,4, L-2 #4, L-3 #1~3, L-4 #2,4:OK!
PCR:failed
sequence order
E-23, K-1, K-2~5
ligation → TF
A-7, A-9, B-1, D-8( linear XP + pSB1C3 XP)
F-2 (E-18 XP + E-5 SP), E-20(A-10 SP + D-3 XP)
preculture
A-10, E-6, E-18, E-23', K-3, L-1~4
8,30,2014
Lab member
Yoshikawa
Contents
miniprep
A-10, E-18, K-3
L-1~4, E-23', E-6, E-18(made glycerol stock)
PCR
B-2, D-9
9,1,2014
Lab member
Nakashima,Itoh,Tara,Tsukada,Takemura
Contents
PCR clean up
B-2, D-9
<img src=""/>
failed
digestion → gel extraction
L-4 ES, E-6 ES, E-18 EX, L-1~3 ES, K-2~5 EX
<img src=""/>
<img src=""/>
Making plate
CP *30
colony PCR
A-7 #1~4, A-9 #1
<img src=""/>
OK!
D-8 #1~4, E-20 #1~4, F-2 #1~4 (100bp Ladder)
<img src=""/>
D-8 #1~4, E-20 #1~4,F-2#1,4:OK!
B-1 #1~4
<img src=""/>
OK!
Ligation
G-5 (E-6 ES + E-18 EX), M-1~4(K-2~5 EX + L-1~4 ES)
preculture
A-7 #1~4, A-9 #1, B-1 #1~4, D-8 #1~4, F-2, E-20
9,2,2014
Lab member
Yoshikawa,Nakashima,Hiura,Tara,Tsukada,Takemura
Contents
miniprep
A-7 #1~4, A-9, B-1 #1~4, D-8 #1~4, F-2, E-2(made glycerol stock)
digestion → gel extraction
A-4 SP, A-7 SP #1, A-7 SP #2, A-9 SP
<img src=""/>
<img src=""/>
A-8XP
<img src=""/>
<img src=""/>
B-1 #1, B-1 #2, B-3 XP, B-10 XP, D-7 XP, D-8 XP, E-20 XP, F-2 SP
<img src=""/>
<img src=""/>
D-8:???
sequence
A-7 #1~4, B-1 #1~4
D-8 #1~4
A-9, A-4, E-5, E-6, E-20
PCR
B-2, D-9
check & colony PCR
M-1~3 #1~4
<img src=""/>
OK!
M-4 #1~4, B-2, D-9, PC(VF2→B-10←VR )
NC, G-5
<img src=""/>
M-4 #1~4,PC(VF2→B-10←VR ):OK!
(M-4 #2~4 is a little longer?)
ligation → TF
C-4(A-7 SP + B-3 XP), C-5(A-7 SP + B-10 XP), E-17(A-9 SP + D-7 XP)
D-1(B-1 SP + D-8 XP), E-21(A-4 SP + D-8 XP), J-4 (F-2 SP + E-20 XP)
preculture
M-1~4 #1, G-5 #1, E-20
We got a result!!
simpler version of assay 1.
Left:Pσ11→GFP generator
Right:Pconst(strong)→σ11 generator & Pσ11→GFP generator
<img src=""/>
9,3,2014
Lab member
Yoshikawa,Nakashima,Hiura,Tara,Yamanaka,Takemura
Contents
M-1~4, G-5(made glycerol stock of M-3,4)
sequence
A-4: OK
A-7: all OK
A-9: OK
B-1:all OK
D-8#1: NG (2 skip)
#2; OK
#3: NG (1 mut.)
#4; NG (2 mut. 2 skip)
E-5: OK
E-6: OK
E-20:OK
digestion → gel extraction
A-7 #1, 2 SP, C-9 XP, C-10 XP, K-2~4 EX, M-1~4 ES
<img src=""/>
<img src=""/>
colony PCR
C-4 a, C-5 a, D-1 a, E-17
<img src=""/>
C-4 a#2,3, C-5 a, D-1 a, E-17:OK!
E-21 b, J-4
<img src=""/>
J-4:wrong
E-21:a little shorter
PCR
B-2, D-9, B-7, B-2(Taq), D-9(Taq)
Taq:positive control
anealing temperature:51℃~61℃(gradient)
ligation → TF
D-5 (A-7 SP + C-10 XP), D-6 (A-7 SP + C-9 XP), N-1~4 (M-1~4 ES + K-2~5 EX)
N-5 (M-1 ES K-3 EX), N-6 (M-3 ES + K-5 EX)
9,4,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Tara,Yamanaka,Tsukada
Contents
miniprep
E-20, D-1(made glycerol stock)
digestion → gel extraction
pSB1C3 (A-4) XS, pSB1C3 (A-4) XP, A-3 SP, D-1 XP
<img src=""/>
<img src=""/>
PCR check & clean up
D-9 #1,3,5,7,9
<img src=""/>
There are bands in #5,7,9
B-2 1,3,5,7,9,11, B-7.
<img src=""/>
There are bands in B-2 #5,7, B-7.
B-2 4,6, D-9 10,11,12
<img src=""/>
OK!
We decided to clean up B-2 #5, D-9 #11, B-7.
Making Plate
CP *30
digestion
B-2 linear SP, D-9 linear XP, B-7 linear XP
colony PCR
D-5, D-6, N-1, N-2 #1~4
<img src=""/>
D-5, D-6, N-1, N-2 #1,2:OK!
N-3~6 #1~4
<img src=""/>
N-3,N-4#1,3,4,N-5#1,4,N-6:OK!
ligation → TF
E-1 (A-3 SP + D-1 XP), B-2 (B-2 linear XP + pSB1C3 XP), D-9 (D-9 linear XP + pSB1C3 XP)
B-7 (B-7 linear XP + pSB1C3 XP), Emp. (pSB1C3 XS)
miniprep
M-1, M-2, C-4, C-5, E-17, E-21, J-4 (made glycerol stock)
K-2, K-5, C-9
preculture
F-2, D-5, D-6, N-1~6
9,5,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Takemura,Yamanaka
Contents
miniprep
F-2
N-1~6, D-5, D-6
→N-1, 2, 4, 5. 6 :failed
digestion → gel extraction
A-1 SP, A-3 SP, D-5 XP, D-6 SP, E-20 XP, K-4 EX, N-3 ES, F-2 SP
J-4 E(check)
<img src=""/>
<img src=""/>
ligation → TF
E-11 (A-3 SP + D-5 XP), E-12 (A-1 SP + D-5 XP), E-14 (A-3 SP + D-6 SP)
E-15 (A-1 SP + D-6 XP), O-3 (K-4 EX + N-3 ES)
PCR
B-2, D-9, B-7
colony PCR
B-2, B-7, D-9, E-1 #1~4
<img src=""/>
B-7 #2,3, D-9 #1, E-1 #3,4:OK!
Z-1 #2~4
<img src=""/>
preculture
B-7 #2,3, D-9 #1, E-1 #3, Z-1 #2, K-3, N-1,2,4~6
9,6,2014
Lab member
<p>Yoshikawa,Nakashima
Contents
miniprep
B-7 #2,3, D-9 #1, E-1 #3, Z-1 #2 (made glycerol stock)
N-1,2,4~6, K-3
PCR
B-2, D-9, B-7
check & colony PCR
B-2, D-9, B-7, B-2#5~8, B-7 #2,3,5,6, D-9 #5,6.7,8
<img src=""/>
9,8,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Takemura,Yamanaka,Tara
Contents
digestion → gel extaction
B-2 linear XP (did not extracted)
N-1,2,4~6 ES
<img src=""/>
<img src=""/>
A-4 SP, pSB1C3 (A-4) XP, A-6 SP, B-7 #2 XP, B-7 #3 XP, D-9 #1 XP, K-2,3,5 EX
<img src=""/>
B-7 #2, D-9 #1:disposed(incomplete cut)
B-7 #3:disposed(a little longer)(This band proved to be correct.9/9 wrote)
<img src=""/>
colony PCR
E-11,12,14,15 #1~4
<img src=""/>
OK!
O-3 #1,2
<img src=""/>
- 2:OK!
PCR
B-2
<img src=""/>
B-7,D-9
<img src=""/>
The band of the longest DNA is OK!
ligation → TF
O-1 (N-1 ES + K-2 EX), O-2 (N-2 ES + K-3 EX), O-4 (N-4 ES + K-5 EX), O-5 (N-5 ES + K-3 EX)
O-6 (N-6 ES + K-5 EX), B-2 (B-2 linear XP (9/8 PCR) + pSB1C3 XP)
B-2' (B-2 linear XP + pSB1C3 XP), D-9, B-7
preculture
D-5, D-6, N-3, E-21, A-3, K-4
E-11 #1, E-12 #1, E-14 #1, E-15 #1, O-3 #2, B-7 #6, D-9 #5,6
9,9,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Takemura,Yamanaka
Contents
miniprep
E-11,12,14,15, O-3, B-7 #6, D-9 #5,6 (made glycerol stock)
D-5, N-3, K-4, A-3
D-6:did not grow
D-5:diposed(doubt of cross contamination)
digestion → gel extraction
B-2 linear XP (did not extracted)
pSB1C3 (A-4) XP, A-6 SP, A-8 EX, B-7 #6 XP, D-9 linear XP, B-7 linear , E-1 EX, E-14 ES, E-15 ES, O-3 ES
<img src=""/>
<img src=""/>
colony PCR
B-2 #1~3, B-2' #1~4, B-7 #1~3, D-9 #1,2, O-1 #1~4
<img src=""/>
B-2' #1, B-7 #1,2, O-1:OK!
O-2,4,5,6 #1~4
<img src=""/>
O-2,3,4,6,O-5#2,3,4
sequence
B-7 #2: NG
B-7 #3: OK
D-9 #1: NG
E-1: OK
C-4: OK
C-5: OK
D-5: OK
D-6: OK
E-17: OK
E-21: OK
F-2: ?
J-4: OK
N-1: OK
N-2: M-2
N-3: OK
N-4: M-4
N-5: OK
N-6: OK
ligation → TF
D-9 (D-9 linear XP + pSB1C3 XP) *2, B-2 (B-2 linear XP + pSB1C3 XP)*2
P-3 (O-3 ES + A-8 EX), I-1 (E-14 ES + E-1 EX), I-2 (E-15 ES + E-1 EX)
preculture
F-2, D-5,6, D-9 #5,6, E-12, K-4
O-1,2,4,6 #1, O-5 #2, B-2' #1
9,10,2014
Lab member
Nakashima,Hiura,Takemura,Yamanaka,Yoshikawa(Fresh)
Contents
miniprep
O-1,5,6, N-2,4, F-2, B-2' #1 (made glycerol stock)
E-12, K-4, D-5
D-6:did not grow
digestion → gel extraction
A-6 SP, A-7 SP, A-8 EX, B-2' XP, B-7 XP
<img src=""/>
<img src=""/>
K-3 EX, K-5 EX, O-1 ES, N-2 ES, N-4 ES
<img src=""/>
<img src=""/>
O-5 ES, O-6 ES
<img src=""/>
<img src=""/>
colony PCR
I-1 #1~4
<img src=""/>
B-2(140909) #1~8, D-9 #1~8
<img src=""/>
B-2 #2, D-9 all, I-1 #2~4, I-2 #1~4:OK!
ligation → TF
O-2 (N-2 ES + K-3 EX), O-4 (N-4 ES + K-5 EX), P-1 (O-1 ES + A-8 EX), P-5 (O-5 ES + A-8 EX)
P-6 (O-6 ES + A-8 EX), C-1' (B-2' XP + A-6 SP), C-3' (B-2 ' XP + A-7 SP), C-8 (B-7 XP + A-6 SP)
preculture
D-9 #5,6, D-9(140909) #1~4, B-2 (140909) #2, I-1 #2, I-2 #1, D-6 #1
9,11,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Hiura,Itoh,Tsukada
Contents
miniprep
D-9 #1~4, B-2 #2, I-1, I-2, D-6 (made glycerol stock)
digestion → gel extraction
A-1 EP, pSB1C3(A-3) EP *2, A-4 SP, A-6 SP, A-7 SP, A-8 EX, A-10 EX, B-2 #2 XP, E-6 EP, E-12 EP
<img src=""/>
<img src=""/>
E-15 EP, E-18 EP, E-20 EP, D-9 #1 XP, O-3 ES
<img src=""/>
<img src=""/>
sequence
B-2' #1, B-2 #2, F-2, E-11, E-12, E-14, E-15, O-1, N-2, O-3, N-4, O-5, O-6, D-9 #1~4
Plate Making
CP *30
colony PCR
C-1', C-3', C-8, O-2, O-4 #1~3
<img src=""/>
C-1', C-3', C-8, O-2, O-4 #1,2:OK!
P-1, P-5, P-6 #1~3
<img src=""/>
→P-1 #1~3, P-5 #2, P-6 #1~3:OK!
ligation → TF
C-1 (A-6 SP + B-2 #2 XP), C-3 (A-7 SP + B-2 #2 XP)
E-22a (A-4 SP + D-9 #1 XP), E-22b (A-4 SP + D-9 #2 XP), P-3 (O-3 ES + A-8 EX)
A-10 CP, A-1 CP, E-6 CP, E-12 CP, E-20 CP, E-15 CP (replace backbone to pSB1C3)
preculture
C-1' #1, C-3' #1, C-8 #1, O-2 #1, O-4 #1, P-1 #1, P-5 #2, P-6 #1, E-12,14,15,18, A-1, O-1,3,5
9,12,2014
Lab member
Yoshikawa,Nakashima,Hiura,Itoh,Tsukada,Tara
Contents
miniprep
C-1', C-3', O-2, O-4, P-1, P-5, P-6 (made glycerol stock)
E-12, E-14, E-15, O-1, O-3, O-5, E-18, A-1
digestion → gel extraction
A-6 SP, A-8 EX *2, B-2 XP, C-1' ES, C-3' ES, C-8 ES, K-6 SP, O-2 ES, O-3 ES, O-4 ES
<img src=""/>
<img src=""/>
C-1,3:did not extracted
P-1 XP, P-5 XP, P-6 XP
<img src=""/>
<img src=""/>
colony PCR
A-1 CP, A-10 CP, C-3, E-6 CP #1~3
<img src=""/>
E-12 CP, E-15 CP, E-20 CP, E-22a, E-22b
<img src=""/>
except E-20#1,2:OK!
sequence
B-2' #1: NG
B-2 #2: OK
D-9 #1: NG
#2: NG
#3: NG
#4: OK
O-1: OK
O-3: OK
O-5: OK
O-6: OK
N-2: OK
N-4: OK
E-11: Ok
E-12: OK
E-14: OK
E-15: OK
F-2: OK
ligation → TF
C-1 (A-6 SP + B-2 XP), P-2~4 (O-2~4 ES + A-8 EX), Q-1,5,6 (P-1,5,6 XP + K-6 SP)
ligation
P-3 (O-3 ES + A-8 EX)
preculture
A-4, A-6, A-8, C-3 #1, A-1 CP #1, E-12 CP #1, E-15 CP #1, E-20 CP #3, E-6 CP #1
9,13,2014
Lab member
Yoshikawa
Contents
miniprep
A-4, A-6, A-8
C-3, E-6 CP, E-12 CP, E-15 CP, E-20 CP, A-1 CP(made glycerol stock)
9,15,2014
Lab member
Yoshikawa,Nakashima,Takemura,Nakamura,Yamanaka,Tara
Contents
digestion → gel extraction
A-8 EX, C-3 ES
<img src=""/>
<img src=""/>
colony PCR
C-1 (σ20F, VR)
<img src=""/>
OK!
ligation → TF
D-4 (C-3 ES + A-8 EX) *2 (new and old competent cell)
preculture
C-1 #1
9,16,2014
Lab member
Yoshikawa,Nakashima,Hiura,Itoh,Nakamura,Yamanaka
Contents
miniprep
C-1 (made glycerol stock)
colony PCR
D-4, P-2~4
<img src=""/>
A-10
<img src=""/>
Q-1,5,6:confirmed by fluorescence
digestion → gel extraction
A-4 SP, A-8 EX, C-1 ES, D-9 XP, E-18 EP, pSB1C3 (A-4) EP
<img src=""/>
ligation → TF
D-2 (A-8 EX + C-1 ES), E-18 CP (E-18 EP + pSB1C3 EP) *2, E-22 (A-4 SP + D-9 XP)
preculture
D-4, P-2~4, A-10 CP, Q-1,5,6
assay
<img src=""/>
PC (E-23': Pconst (strong)-GFP-d.term)
Experiment (K-1: pCMV-GFP-d.term)
NC (Z-1: pSB1C3)
absorbance:600nm and 395nm
Absorbance of 395nm proved not to be able to measure.
We need fluorospectro-photometer.
9,17,2014
Lab member
Yoshikawa,Nakashima,Hiura,Takemura,Yoshikawa(Fresh),Yamanaka
Contents
miniprep
D-4, P-2~4, Q-1,5,6, A-10 CP (made glycerol stock)
digestion → gel extraction
A-1 CP SP, A-3 SP, D-4 XP, K-6 SP, P-2 XP, P-3 XP, P-4 XP
<img src=""/>
<img src=""/>
colony PCR
D-2, E-18 CP, E-22
<img src=""/>
ligation → TF
E-8 *2 (A-3 SP + D-4 XP), E-9 (A-1 CP SP + D-4 XP), Q-2~4 (K-6 SP + P-2~4 XP)
assay
Photo of plate(n=4)
<img src=""/>
<img src=""/>
<img src=""/>
<img src=""/>
<img src=""/>
<img src=""/>
<img src=""/>
<img src=""/>
9,18,2014
Lab member
Yoshikawa,Nakashima,Hiura,Tsukada,Nakamura
Contents
miniprep
D-2, E-18 CP, E-22
(made glycerol stock)
digestion → gel extraction
A-1 CP SP, A-3 SP, A-9 SP, D-2 XP, E-22 SP, G-5 XP
<img src=""/>
<img src=""/>
colony PCR
E-8, E-9 #1~4
<img src=""/>
Q-2~4 :confirmed by fluorescent
ligation → TF
E-2 (A-3 SP + D-2 XP)
E-3 (A-1CP SP + D-2 XP)
E-19 (A-9 SP + D-2 XP)
H-5 (E-22 SP + G-5 XP)
preculture
E-8,9, Q-2~4
9,19,2014
Lab member
Yoshikawa,Nakashima,Hiura,Tara,Yamanaka,Nakamura
Contents
miniprep
E-8,9, Q-2~4
digestion → gel extraction
A-9 SP, D-2 XP, E-22 XP, F-2 SP, G-5 SP
<img src=""/>
<img src=""/>
colony PCR
E-2, E-19 #1~4
E-3, H-5 :No colony
<img src=""/>
ligation → TF
H-5 (G-5 SP + E-22 XP)
H-4 (F-2 SP + E-22 XP)
preculture
E-2 E#1, E-19 #1
9,20,2014
Lab member
Yoshikawa
Contents
miniprep
E-2, E-19
9,22,2014
Lab member
Yoshikawa,Nakashima,Takemura,Nakamura,Tara,Yamanaka
Contents
digestion → gel extraction
A-1 SP, D-2 XP, E-2 ES, E-17 EX, E-22 XP, G-5 SP, J-4 SP
<img src=""/>
<img src=""/>
colony PCR
H-4
<img src=""/>
H-4#1,2,3:OK!
ligation - TF
H-5 (G-5 SP + E-22 XP)
J-6 (J-4 SP + E-22 XP)
E-3 (A-1 SP + D-2 XP)
F-1 (E-2 ES + E-17 EX)
9,23,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Tara,Yamanaka
Contents
digestion, gel extraction
A-1CP SP, D-2 XP, E-22 XP, G-5 SP
J-4 SP(stopped)
<img src=""/>
<img src=""/>
miniprep
H-4(made glycerol stock)
colony PCR
J-6
<img src=""/>
OK!
ligation,TF
H-5(G-5 SP+E22 XP)
E-3(A-1 SP+D-2 XP)
9,24,2014
Lab member
Nakashima,Yamanaka,Takemura
Contents
miniprep
F-1,J-6(made glycerol stock)
E-22,D-6
G-6 did not grow.
We disposed J-6.(dropped on the floor)
digestion,gel extraction
A-1 SP,E-2 ES,E-5 ES,E-17 EX,E-18CP EX,E-21 XP,G-5 SP,D-2 XP,F-1 SP,E-19 XP,E-22 XP
<img src=""/>
<img src=""/>
ligation,TF
J-2(F-1 SP+E-1 XP)
H-1(F-1 SP+E-21 XP)
F-3(E-5 ES+E-17 EX)
F-4(E-2 ES+E-18 EX)
E-3(A-1 SP+D-2 XP)
H-5(G-5 SP+E-22 XP)
9,25,2014
Lab member
Nakashima,Nakamura,Tara,Tsukada,Yamanaka
Contents
miniprep
A-1CP, J-6
digestion,gel extraction
A-1 SP,D-2 XP,E-5 ES,E-17 EX,E-19 XP,E-21 XP,E-22 XP,F-1 SP,G-5 SP
<img src=""/>
<img src=""/>
ligation,TF
J-2(F-1 SP+E-19 XP)
H-1(F-1 SP+E-21 XP)
F-3(E-5 ES+E-17 EX)
E-3(A-1 SP+D-2 XP)
H-5(G-5 SP+E-22 XP)
Making competent cell
preculture
G-5,E-5,E-17,E. coli JM109
competent cell(made at 0911) check
Ampicillin,Chloramphenicol,non-antibiotics
culture in LB 3ml
LB midium 3ml, as N.C.
culture for 2h.
no TF
result of check
Ampicilln,non-antibiotics:become clouded
Chroramphenicol,LB:did not grow
So,we confirmed ampicillin resistant plasmid exists in competent cell and we disposed it.
9,26,2014
Lab member
Yoshikawa,Nakashima,Tara,Yoshikawa(Fresh),Tsukada
Contents
miniprep
G-5,E-5,E-17
digestion
A-1CP SP,D-2 XP,G-5 EP(strange band appeared,disposed),pSB1C3(A-4) EP,A-1 SP
<img src=""/>
<img src=""/>
colony PCR
F-3,F-4,H-1,H-5,J-2
<img src=""/>
<img src=""/>
OK!
ligation,TF
E-3(D-2 XP+A-1SP)
E-3CP(D-2 XP+A-1CP SP)
preculture
F-3,F-4,H-1,H-5,J-2#1,G-5
9,27,2014
Lab member
Yoshikawa,Nakashima
Contents
TF
E-3(chemical)
miniprep
F-3,F-4,H-1,H-5,J-2(made glycerol stock)
G-5
TF
E-3CP(electroporation)
9,29,2014
Lab member
Yoshikawa,Nakashima,Nakamura,Tara,Takemura
Contents
digestion,gel extraction
A-1CP SP,pSB1C3(A-4) EP,D-2 XP,E-21 XP,G-5 EP,H-5 EP,J-2 SP
<img src=""/>
<img src=""/>
Gel making
ligation
G-5CP(G-5 EP+pSB1C3 EP)
H-5CP(H-5 EP+pSB1C3 EP)
J-5(J-2 SP+E-21 XP)
E-3(A-1CP SP+P-2 XP)
preculture
E-5,E-11,E-22
K-1,E-23',Z-1(for assay)
PCR
VF2-(ligation product of E-3)-VR
E-3 lig:1uL
VF2:1uL
VR:1uL
Taq:5uL
MilliQ:2uL
Total:10uL
extention:1m12sec
<img src=""/>
We observed the band which had expected length.
The ligtion must be OK!
9,30,2014
Lab member
Yoshikawa.Nakamura,Tsukada,Tara,Yamanaka
Contents
miniprep
E-2,E-5,E-11
digestion,gel extraction
We could not find D-2 sample(probably accidentally disposed).
So we stopped it.
colony PCR
G-5,H-5,J-5
<img src=""/>
H-5,J-5#1,2,3,4:OK!
Making M9 medium
1M MgSO4 50ml
1M CaCl2 10ml
20% glucose 50ml
digestion(cutcheck)
G-5 E,G-5 P,G-5 non-cut
<img src=""/>
Strange bands appeared.
We decided to read a sequence of this part.
10,1,2014
Lab member
Nakashima,Tara,Nakamura,Takemura
Contens
miniprep
H-5CP,G-5CP,J-5(made glycerol stock)
sequence order
E-2,E-8,E-9,E-19,F-1,F-3,F-4,G-5,H-1,H-4
H-5(VF-VR,Psigma2F-anti2R),J-2,J-4,J-5,J-6
10,2,2014
Lab member
Nakashima,Nakamura,Tara
Contents
assay
completely failed
In M9 medium, Escherichia.coli JM109 did not grow well.(doubling time:1h)
The glycerol stock needed to be put a lot.
culture
F-2,F-3,F-4(for M9 check)
PCR
G-1(F,R),G-4(F,R),G-5(F,R),H-1(F,R),H-4(F,R),H-5(F,R)
Template:1ng/uL,1uL
Making M9 medium
5*M9 24mL
20% Glu 1.2mL
MgSO4 240uL
CaCl2 12uL
Amino acid 10mL
mess up to 1L
PCR check
<img src=""/>
OK!(except G-5)
PCR
G-1,G-4,H-1,H-4
extension time:6m30sec
EpCAM nested
95C 3min-(-95C 30sec-48C 30sec-72C 3min-)*30-72C 5min-4C
preculture
E-17,E-18,F-1,F-2,F-3,F-4,Z-1(M9)
E-23'(LB)
10,3,2014
Lab member
Nakashima,Tara,Nakamura
Contents
PCR clean up and check
<img src=""/>
G-1,G-4,H-1,H-4:Band in correct position and unexpected position.
EpCAM:No band
digestion,gel extraction
<img src=""/>
<img src=""/>
G-1deg linear EP,G-4deglinear EP,H-1deg linear EP,H-4deg linear EP(A-4)
(deg:degradation tag)
PCR
EpCAM nested
94C 3min-(-94C 30sec-48C 30sec-72C 3min-)*30-72C 5min-4C
<img src=""/>
No band
gel making
ligation,TF
H-1'(H-1'linear EP+pSB1C3 EP)
H-4'(H-4'linear EP+pSB1C3 EP)
G-1'(G-1'linear EP+pSB1C3 EP)
G-4'(G-4'linear EP+pSB1C3 EP)
PCR
EpCAM nested
95C 3min-(-95C 30sec-46C 30sec-72C 3min-)*30-72C 5min-4C
<img src=""/>
No band
10,4,2014
Lab member
Yoshikawa
assay1
F-2 in 20mL culture
When OD600=0.516,we put 10% arabinose 20uL.
F-1 in 20mL culture
When OD600=0.514,we put 10% arabinose 20uL.
Z-1 in 20mL culture
When OD600=0.544,we put 10% arabinose 20uL.
O/N culture
Culture in 3mL:disposed(OD600 value did not agrees with each other.)
colony PCR
H-1deg,H-4deg,G-1eg,G-4deg
We confirmed by fluorescence.
preculture
H-1deg,H-4deg#1,G-1eg,G-4deg
10,5,2014
Lab member
Yoshikawa
Contents
miniprep
H-1deg,H-4deg#1,G-1eg,G-4deg
preculture
(M9)
E-15CP,E-17,E-18CP,I-2,F-1,2,3,4,Z-1
10,6,2014
Lab member
Yoshikawa,Nakashima,Tara
Contents
assay1,3
E-15,I-2,F-1,F-2,F-3,F-4,F-17,E-18,Z-1
Measured the OD 600 value.
Except I-2,F-2,the value is more than 1.0.
F-1,F-3,E-17,Z-1(20 fold dilution):Culture in 3mL.
The composition of M9 proved to be wrong,so disposed.
Making M9 medium
5*M9 200mL
20% Glu 10mL
amino acids 10mL
1M MgSO4 2mL
1M CaCl2 100uL
MilliQ 778mL
Total 1000mL
result of OD600
F-3(non-Chloramphenicol)
1h:0.094
2h:0.086
F-3(Chloramphenicol)
1h:0.074
2h:0.073
assay1
(tentative)
We measured the fluorescence of F-1,F-2,Z-1(culture in 20mL).
Ex:501nm
F-2:We observed a peak in 511nm.
F-1,Z-1:No peak
preculture
F-1,F-2,F-3,F-4,E-15CP,I-2,Z-1,E-17,E-18CP(M9 medium)
E-23'(LB medium)
10,7,2014
Lab member
Yoshikawa,Nakashima,Tara,Nakamura
Contents
assay
F-1,F-13,E-17,Z-1,E-15,I-2
culture in M9
except E-15,OD600 is more than 1.0.
E-15:over 0.85
F-2:only 0.3
E-23':over 2.0,culture in LB medium
All samples was cultured in 3 mL.(n=5)
F-1,Z-1:cultured in 20mL(flask)(n=1)
OD600 before subculture
E-15:1.113
E-11:0.933
E-18:1.190
E-23':forgot to measure
F-1:0.927
F-2:0.374
F-3:0.878
F-4:0.992
I-2:0.888
Z-1:1.084
PCR
J-5(F,R),J-6(F,R)
J-5:OK!
extension time
F:1800+200=2000bp,4min
R:1850+200=2050bp,4min
PCR
J-6(F,R)
J-5R
extension time:1min
10,8,2014
Lab member
Yoshikawa,Nakashima,Tara
Contents
making gel
subculture
Escherichia.coliMG1655
100 fold dilution
20mL,flask
PCR clean up and check
<img src=""/>
<img src=""/>
J-6F:low concentration
J-6R:shorter band is OK!
We decided that we made J-5,J-6
as H5deg-positive feedback circuit, and H6deg-positive feedback circuit.
sequence order
G-1deg,G-4deg,H-1deg,H-4deg
TF
(electroporation)
F-1,F-2,F-3,F-4,E-17,E-18CP,Z-1,I-2,E-15
G-1deg,G-4deg,H-1deg,h-4deg,J-4,J-4
also,2mL culture as recovery.
10,9,2014
Lab member
Yoshiakwa,Nakashima,Tara
Contents
digestion,gel extraction
E-19 XP,E-20 XP,H-1deg SP,H-4deg SP
making gel
making plate
Chloramphenicol*10
ligation
J-5deg(E-19XP+H-1degSP)
J-6deg(E-20XP+H-4degSP)
We did not have competent cell of E.coli MG1655, so put it in freezer.
preculture
F-1,E-17,E-15,Z-1,I-2:both in LB medium and M9 medium.
MG1655:LB medium
10,10,2014
Lab member
Yoshikawa,Nakashima,Tara,Yamanaka
assay1,3
I-2,E-15,Z-1,F-1,E-17(made glycerol stock,subculture in 20 fold dilution)
MG1655 did not grow, because we accidentally put antibiotics.
OD600(O/N culture)
E-15:1.795
E-17:1.781
F-1:1.937
I-2:1.886
Z-1:1.780