Team:Groningen/Template/MODULE/projects/parts/biobricktable

From 2014.igem.org

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iGEM Groningen 2014 assembled parts
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Submitted parts
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<th>EMPTY</th><th>Part</th><th>Type</th><th colspan="2">Description</th><th>Designer</th><th>Length</th>
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<th>Part</th><th>Type</th><th colspan="2">Description</th><th>Designer</th><th>Length</th>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365000">BBa_K1365000</a></td><td>Coding</td><td>nisA</td><td>Nisin precursor. Should be used in combination with the nisin gene cluster (e.g. Lactococcus lactis NZ9800).</td><td>Sandra Mous</td><td>174</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365000">BBa_K1365000</a></td><td>Coding</td><td>nisA</td><td>Nisin precursor. Should be used in combination with the other genes on the nisin operon (e.g. in <i>Lactococcus lactis</i> NZ9800).</td><td>Sandra Mous</td><td>174</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365003">BBa_K1365003</a></td><td>Coding</td><td>nisC</td><td>Protein needed in the cyclization of the nisin precursor. Part of the nisin gene cluster.</td><td>Sandra Mous</td><td>1245</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365003">BBa_K1365003</a></td><td>Coding</td><td>nisC</td><td>Protein needed in the cyclization of the nisin precursor. Part of the nisin operon.</td><td>Sandra Mous</td><td>1245</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365006">BBa_K1365020</a></td><td>composite</td><td>nisRK</td><td>Two proteins involved in the recognition of nisin and positive feedback regulation to induce the pNisA promoter. This biobrick is part of the nisin gene cluster.</td><td>Sandra Mous</td><td>2023</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365006">BBa_K1365006</a></td><td>Coding</td><td>nisRK</td><td>Two proteins involved in the recognition of nisin and positive feedback regulation to induce the PNisA promoter. This BioBrick is part of the nisin operon.</td><td>Sandra Mous</td><td>2023</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365020">BBa_K1365020</a></td><td>Coding</td><td>sfGFP</td><td>Superfolder GFP is a more table protein than more communly used GFP. It gives an higher fluorescence as well1.</td><td>Rick Elbert</td><td>1625</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365020">BBa_K1365020</a></td><td>Coding</td><td>sfGFP(Bs)</td><td>SfGFP(Bs) is a for <i>Bacillus</i> optimized version of the high performance sfGFP that works really well in <i>Lactococcus lactis</i>.<sup>4</sup></td><td>Sandra Mous</td><td>1625</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365100">BBa_K1365100</a></td><td>Device</td><td>EMPTY</td><td>Dual action system against S. aureus. System made for L. lactis and codes for nisin precursor and the biofilm degradeding enzyme DspB. The latter is fused with an USP45sp for secretion from the cell. This device has an P2 operon and this thus transcriped after binding from p-AgrA.</td><td>Rick Elbert</td><td>1625</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365100">BBa_K1365100</a></td><td>Device</td><td>P2-nisA-dspB-ssUsp45</td><td>Dual action system against <i>S. aureus</i>, made for expression in <i>L. lactis</i>. Codes for the nisin precursor NisA and the biofilm degrading enzyme DspB. The latter is fused with an USP45sp for transport out of the cell. This device has an P2 promoter and is thus transcribed after binding with p-AgrA.</td><td>Rick Elbert</td><td>1625</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365111">BBa_K1365111</a></td><td>Coding</td><td>ssUsp45-dspB</td><td>DispersinB fused to an Usp45sp. The dspB enzyme is secreted from the cell via the usp system of L. lactis2.</td><td>Rick Elbert</td><td>1170</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365111">BBa_K1365111</a></td><td>Coding</td><td>ssUsp45-dspB</td><td>DispersinB fused to an Usp45sp. The DspB enzyme is secreted from the cell via the USP system of <i>L. lactis</i>.<sup>5</sup></td><td>Rick Elbert</td><td>1170</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365120">BBa_K1365120</a></td><td>Device</td><td>EMPTY</td><td>Dual action system against P. aeruginosa. System is made for L. lactis and includes the genes for autoinducer inactivation enzyme A (AiiA) and Dispersin B (DspB).</td><td>Rick Elbert</td><td>2350</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365120">BBa_K1365120</a></td><td>Device</td><td>PLasR-aiiA-dpsB</td><td>Dual action system against <i>P. aeruginosa</i> for expression in <i>L. lactis</i> and includes the genes for the autoinducer inactivation enzyme A (AiiA) and Dispersin B (DspB).</td><td>Rick Elbert</td><td>2350</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365130">BBa_K1365130</a></td><td>Device</td><td>EMPTY</td><td>EMPTY</td><td>Rick Elbert</td><td>EMPTY</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365130">BBa_K1365130</a></td><td>Device</td><td>PLasR-aiiA-dspB-his</td><td>Same system as BBa_K1365120, but with 6x histidine tags fused to the two proteins.</td><td>Rick Elbert</td><td>2416</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365169">BBa_K1365169</a></td><td>Coding</td><td>ssUsp45-aiiA</td><td>Autoinducer inactivation enzyme A (AiiA) gene fused to signal sequence for the usp45 secretion pathway.</td><td>Rick Elbert</td><td>834</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365169">BBa_K1365169</a></td><td>Coding</td><td>ssUsp45-aiiA</td><td>Autoinducer inactivation enzyme A (AiiA) gene fused to signalsequence for the USP45 secretion pathway.</td><td>Rick Elbert</td><td>834</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365301">BBa_K1365301</a></td><td>Plasmid</td><td>pIL253<sup>3</sup></td><td>Plasmid for L. lactis including the biobrick compatible VF2 and RV primer binding sites, prefix and suffix. No illegal restriction sites.</td><td>Lisa Hielkema</td><td>6230</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365301">BBa_K1365301</a></td><td>Plasmid</td><td>pIL253</td><td>Shuttlevector for <i>L. lactis</i> and <i>B. subtilis</i>.<sup>6</sup> Includes the BioBrick compatible VF2 and RV primer binding sites, prefix and suffix. Contains no illegal restriction sites.</td><td>Lisa Hielkema</td><td>6230</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365555">BBa_K1365555</a></td><td>Compesition</td><td>RBS-sfGFP-dt</td><td>Compesition of the superfolder GFP combined with RBS and double terminator (dt). This part was used to assemble with different promoters used for characterization experiments.</td><td>Aakanksha Saraf</td><td>874</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365555">BBa_K1365555</a></td><td>Composition</td><td>RBS-sfGFP-dt</td><td>SfGFP(Bs) combined with RBS and double terminator. This part was used to assemble sfGFP(Bs) with different promoters to characterize the promoters.</td><td>Aakanksha Saraf</td><td>874</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365556">BBa_K1365556
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<td><a href="http://parts.igem.org/Part:BBa_K1365556">BBa_K1365556</a></td><td>Composition</td><td>RBS-nisA-dt</td><td>NisA combined with an RBS and double terminator. This part was assembled with different promotors for characterization experiments.</td><td>Aakanksha Saraf</td><td>328</td>
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</a></td><td>Compesition</td><td>RBS-nisA-dt</td><td>Compesition of the precursor nisA combined with an RBS and double terminator (dt). This part was assembled with a range of promotor to be used for characterization experiments.</td><td>Aakanksha Saraf</td><td>328</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365557">BBa_K1365557</a></td><td>Reporter</td><td>EMPTY</td><td>ESuperfolder GFP under a constitituve promoter. Desingend for the use in L. lactis and E. coli.PTY</td><td>Aakanksha Saraf</td><td>915</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365557">BBa_K1365557</a></td><td>Reporter</td><td>J23101-sfgfp(bs)</td><td>SfGFP(Bs) with the constitutive promoter J23101. Designed for use in <i>L. lactis</i> and <i>E. coli.</i></td><td>Aakanksha Saraf</td><td>915</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365997">BBa_K1365997</a></td><td>Device</td><td>EMPTY</td><td>AHL sensor. The LasR membrane protein is produced by this device. </td><td>Chandhuru Jagadeesan</td><td>1003</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365997">BBa_K1365997</a></td><td>Device</td><td>lasR</td><td>AHL sensor. The LasR membrane protein is produced by this device.</td><td>Chandhuru Jagadeesan</td><td>1003</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365998">BBa_K1365998</a></td><td>Signaling</td><td>EMPTY</td><td>AHL generator. This part can be used to mimic the presence of AHL producing bacteria P. aeruginosa.</td><td>Chandhuru Jagadeesan</td><td>892</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365998">BBa_K1365998</a></td><td>Signaling</td><td>lasI</td><td>AHL generator. This part can be used to mimic the presence of the AHL producing bacteria <i>P. aeruginosa</i>.</td><td>Chandhuru Jagadeesan</td><td>892</td>
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<td>EMPTY</td><td><a href="http://parts.igem.org/Part:BBa_K1365999">BBa_K1365999</a></td><td>compesition</td><td>RBS-GFP-dt</td><td>Composition of ribosome binding site, green fluorescence protein and double terminator. Brick is both L. lactis as E. coli compatible.</td><td>Chandhuru Jagadeesan</td><td>873</td>
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<td><a href="http://parts.igem.org/Part:BBa_K1365999">BBa_K1365999</a></td><td>Composition</td><td>RBS-GFP-dt</td><td>GFP with RBS and double terminator. This BioBrick is compatible with <i>L. lactis</i> and <i>E. coli</i>.</td><td>Chandhuru Jagadeesan</td><td>873</td>
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<td>EMPTY</td><td>EMPTY</td><td>EMPTY</td><td>EMPTY</td><td>EMPTY</td><td>EMPTY</td><td>EMPTY</td>
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Latest revision as of 01:27, 18 October 2014

Submitted parts
 
PartTypeDescriptionDesignerLength
BBa_K1365000CodingnisANisin precursor. Should be used in combination with the other genes on the nisin operon (e.g. in Lactococcus lactis NZ9800).Sandra Mous174
BBa_K1365003CodingnisCProtein needed in the cyclization of the nisin precursor. Part of the nisin operon.Sandra Mous1245
BBa_K1365006CodingnisRKTwo proteins involved in the recognition of nisin and positive feedback regulation to induce the PNisA promoter. This BioBrick is part of the nisin operon.Sandra Mous2023
BBa_K1365020CodingsfGFP(Bs)SfGFP(Bs) is a for Bacillus optimized version of the high performance sfGFP that works really well in Lactococcus lactis.4Sandra Mous1625
BBa_K1365100DeviceP2-nisA-dspB-ssUsp45Dual action system against S. aureus, made for expression in L. lactis. Codes for the nisin precursor NisA and the biofilm degrading enzyme DspB. The latter is fused with an USP45sp for transport out of the cell. This device has an P2 promoter and is thus transcribed after binding with p-AgrA.Rick Elbert1625
BBa_K1365111CodingssUsp45-dspBDispersinB fused to an Usp45sp. The DspB enzyme is secreted from the cell via the USP system of L. lactis.5Rick Elbert1170
BBa_K1365120DevicePLasR-aiiA-dpsBDual action system against P. aeruginosa for expression in L. lactis and includes the genes for the autoinducer inactivation enzyme A (AiiA) and Dispersin B (DspB).Rick Elbert2350
BBa_K1365130DevicePLasR-aiiA-dspB-hisSame system as BBa_K1365120, but with 6x histidine tags fused to the two proteins.Rick Elbert2416
BBa_K1365169CodingssUsp45-aiiAAutoinducer inactivation enzyme A (AiiA) gene fused to signalsequence for the USP45 secretion pathway.Rick Elbert834
BBa_K1365301PlasmidpIL253Shuttlevector for L. lactis and B. subtilis.6 Includes the BioBrick compatible VF2 and RV primer binding sites, prefix and suffix. Contains no illegal restriction sites.Lisa Hielkema6230
BBa_K1365555CompositionRBS-sfGFP-dtSfGFP(Bs) combined with RBS and double terminator. This part was used to assemble sfGFP(Bs) with different promoters to characterize the promoters.Aakanksha Saraf874
BBa_K1365556CompositionRBS-nisA-dtNisA combined with an RBS and double terminator. This part was assembled with different promotors for characterization experiments.Aakanksha Saraf328
BBa_K1365557ReporterJ23101-sfgfp(bs)SfGFP(Bs) with the constitutive promoter J23101. Designed for use in L. lactis and E. coli.Aakanksha Saraf915
BBa_K1365997DevicelasRAHL sensor. The LasR membrane protein is produced by this device.Chandhuru Jagadeesan1003
BBa_K1365998SignalinglasIAHL generator. This part can be used to mimic the presence of the AHL producing bacteria P. aeruginosa.Chandhuru Jagadeesan892
BBa_K1365999CompositionRBS-GFP-dtGFP with RBS and double terminator. This BioBrick is compatible with L. lactis and E. coli.Chandhuru Jagadeesan873