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| + | <h2>Mdfa Antiporter</h2> |
| + | </div> |
| + | <h3><b>BACKGROUND</b></h3> |
| + | <p> The resistance of Escherichia coli to many drugs simultaneously (multidrug resistance) often involves the expression of membrane transporters (Mdrs);MdfA,the known bacterial MDR transporters probably utilize the membrane potential(Δψ) and/or the proton gradient (ΔpH) as the driving force for drug export <sup>(1, 2, 3)</sup>.</p> |
| + | <p> In <i>Escherichia coli</i>, Mdfa are identified to function in maintenance of a stable cytoplasmic pH under conditions of alkaline stress. </p> |
| + | <p> This process is mainly activated by the cross membrane proton electrochemical gradient .changing the electrochemical electric potential of proton built by respiration chain to the cross membrane Na<sup>+</sup> electrochemical potential. From research about the Na<sup>+</sup>/ H<sup>+</sup> antiporter of E.coli, mdfa can pump Na<sup>+</sup> out of cell when it pumps H<sup>+</sup> into cell and ATP is consumed through the process. <sup>(4)</sup> |
| + | <div class="row"> |
| + | <div class="col-xs-offset-2" > <img width="700" height="360" src="https://static.igem.org/mediawiki/2014/3/3d/SzuM1.jpg"> </div> |
| + | </div> |
| + | <p>Secondary structure model of MdfA <sup>(5)</sup>. TMSs of 19 to 21 hydrophobic amino acid residues were chosen based on the hydropathyprofile. Positively charged residues are in bold-face type, and the transport protein’s consensus footprint (11, 14) is emphasized in the loop between TMS 2 and TMS3 (numbers at top of panel C indicate TMSs).</p> |
| + | <h3>METHOD</h3> |
| + | <p> The sequence of Mdfa was from GenBank. After primer design, pcr and gene sequencing, we linked Mdfa to a strong promoter and RBS(BBa_K608002). Then the product, Mdfa device(BBa_K1350006) has been done. <sup>(6)</sup> We both single digested and double digested the Mdfa+pSB1C3(BBa_K1350005) and promoter+RBS+Mdfa+pSB1C3(BBa_K1350006)to testify if we have inserted the Mdfa and promoter+RBS +Mdfa successfully.</p> |
| + | <h3>RESULT</h3> |
| + | <div class="row"> |
| + | <div class="col-xs-offset-4"> <img src="https://static.igem.org/mediawiki/2014/1/13/SzuM2.jpg"> </div> |
| + | </div> |
| + | <p> Figure 1. Restriction digestion plasmid gel picture</p> |
| + | <p>Mdfa is known as 1233 bp.The Mdfa part from double digestion of Mdfa+pSB1C3 is smaller than the promoter+RBS+Mdfa part from double digestion of promoter+Mdfa+pSB1C3.</p> |
| + | <div class="row"> |
| + | <div class="col-xs-offset-4" > <img width="300" height="230" src="https://static.igem.org/mediawiki/2014/f/f6/SzuM4.jpg"> </div> |
| + | <div class="col-xs-offset-4"> <img width="300" height="230" src="https://static.igem.org/mediawiki/2014/5/57/SzuM3.jpg"> </div> |
| + | </div> |
| + | <p align="center">Figure 2.Growth contrast in high pH picture</p> |
| + | <p> Culture four concentration gradients of E-coli (Mdfa transformed) and E-coli (BBa_K608002 transformed) in high pH conditions. The dilution proportion from left to right respectively is zero, doubling,10-fold,100-fold. The E-coli transformed Mdfa proves to grow more normally than none Mdfa E-coli.</p> |
| + | <div class="row"> |
| + | <div class="col-xs-4 "> <img width="300" height="245" src="https://static.igem.org/mediawiki/2014/2/26/SzuM5.jpg"> </div> |
| + | <div class="col-xs-4 "> <img src="https://static.igem.org/mediawiki/2014/5/56/SzuM6.png"> </div> |
| + | <div class="col-xs-4"> <img src="https://static.igem.org/mediawiki/2014/b/ba/SzuM7.png"> </div> |
| + | </div> |
| + | <div class="row"> |
| + | <div class="col-xs-offset-2 col-xs-4"> <img src="https://static.igem.org/mediawiki/2014/4/4a/SzuM8.png"> </div> |
| + | <div class="col-xs-4"> <img src="https://static.igem.org/mediawiki/2014/3/3f/SzuM9.png"> </div> |
| + | </div> |
| + | <p align="center"> Figure 3. Chart of OD value of Mdfa device and control group in different pH</p> |
| + | <p align="center">Using OD values to validate the growth of E-coli (with Mdfa) and E-coli (with a promoter and RBS). </p> |
| + | <p align="center">Compared with the E-coli with a promoter, E-coli with Mdfa grow more actively in pH9.0 to pH9.5. In the pH9.75 to pH10, none of them grow </p> |
| + | <h3>Conclusion</h3> |
| + | <p> The result shows Mdfa does work actively in E-coli ,helping tolerate the high pH conditions in a range from pH 9.0 to Ph 9.5.</p> |
| + | <h3>DISCUSSION</h3> |
| + | BBa_K608002 by iGEM11_Freiburg 2011 is a strong Promoter and strong RBS and it is not related to tolerating alkaline stress, so it will be a good no-treatment control group. |
| + | </p> |
| + | <h5><i>REFERENCES</i></h5> |
| + | <ul style="font-size:small"> |
| + | <li>1. Bolhuis, H., G. Poelarends, H. W. van Veen, B. Poolman, A. J. M. Driessen, |
| + | and W. N. Konings. 1995. The lactococcallmrP gene encodes a proton |
| + | motive force-dependent drug transporter. J. Biol. Chem. 270:26092–26098. </li> |
| + | <li>2. Grinius, L. L., and E. B. Goldberg. 1994. Bacterial multidrug resistance is |
| + | due to a single membrane protein which functions as a drug pump. J. Biol. |
| + | Chem. 269:29998–30004. </li> |
| + | <li>3. Grinius, L. L., and E. B. Goldberg. 1994. Bacterial multidrug resistance is |
| + | due to a single membrane protein which functions as a drug pump. J. Biol. |
| + | Chem. 269:29998–30004. </li> |
| + | <li>. Etana Padan and Eitan Bibi.. Alkaline pH homeostasis in bacteria: New insights. 2005 |
| + | Nov;1717(2):67-88 </li> |
| + | <li>5.MdfA, an Escherichia coli multidrug resistance protein with an extraordinarily broad spectrum of drug recognition.Edgar R1, Bibi E. J Bacteriol. 1997 Apr;179(7):2274-80.</li> |
| + | <li>6. mdfA multidrug efflux system protein [ Escherichia coli str. K-12 substr. MG1655 ]. NC_000913.3</li> |
| + | </ul> |
| + | </article> |
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- | <div class="related-title"> <h2>Mdfa Antiporter</h2></div>
| + | |
- | <h3><b>BACKGROUND</b></h3>
| + | |
- | <p> The resistance of Escherichia coli to many drugs simultaneously (multidrug resistance) often involves the expression of membrane transporters (Mdrs);MdfA,the known bacterial MDR transporters probably utilize the membrane potential(Δψ) and/or the proton gradient (ΔpH) as the driving force for drug export <sup>(1, 2, 3)</sup>.</p>
| + | |
- | <p> In <i>Escherichia coli</i>, Mdfa are identified to function in maintenance of a stable cytoplasmic pH under conditions of alkaline stress. </p>
| + | |
- | <p> This process is mainly activated by the cross membrane proton electrochemical gradient .changing the electrochemical electric potential of proton built by respiration chain to the cross membrane Na<sup>+</sup> electrochemical potential. From research about the Na<sup>+</sup>/ H<sup>+</sup> antiporter of E.coli, mdfa can pump Na<sup>+</sup> out of cell when it pumps H<sup>+</sup> into cell and ATP is consumed through the process. <sup>(4)</sup>
| + | |
- |
| + | |
- | <div class="row">
| + | |
- | <div class="col-xs-offset-1">
| + | |
- | <img src="https://static.igem.org/mediawiki/2014/3/3d/SzuM1.jpg">
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | <p>Secondary structure model of MdfA <sup>(5)</sup>. TMSs of 19 to 21 hydrophobic amino acid residues were chosen based on the hydropathyprofile. Positively charged residues are in bold-face type, and the transport protein’s consensus footprint (11, 14) is emphasized in the loop between TMS 2 and TMS3 (numbers at top of panel C indicate TMSs).</p>
| + | |
- | | + | |
- | <h3>METHOD</h3>
| + | |
- | <p> The sequence of Mdfa was from GenBank. After primer design, pcr and gene sequencing, we linked Mdfa to a strong promoter and RBS(BBa_K608002). Then the product, Mdfa device(BBa_K1350006) has been done. <sup>(6)</sup>
| + | |
- | We both single digested and double digested the Mdfa+pSB1C3(BBa_K1350005) and promoter+RBS+Mdfa+pSB1C3(BBa_K1350006)to testify if we have inserted the Mdfa and promoter+RBS +Mdfa successfully.</p>
| + | |
- | | + | |
- | <h3>RESULT</h3>
| + | |
- | <div class="row">
| + | |
- | <div class="col-xs-offset-4">
| + | |
- | <img src="https://static.igem.org/mediawiki/2014/1/13/SzuM2.jpg">
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | <p> Figure 1. Restriction digestion plasmid gel picture</p>
| + | |
- |
| + | |
- | <p>Mdfa is known as 1233 bp.The Mdfa part from double digestion of Mdfa+pSB1C3 is smaller than the promoter+RBS+Mdfa part from double digestion of promoter+Mdfa+pSB1C3.</p>
| + | |
- |
| + | |
- |
| + | |
- | <div class="row">
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- | <p>  Figure 2.Growth contrast in high pH picture</p>
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- | <p> Culture four concentration gradients of E-coli (Mdfa transformed) and E-coli (BBa_K608002 transformed) in high pH conditions. The dilution proportion from left to right respectively is zero, doubling,10-fold,100-fold. The E-coli transformed Mdfa proves to grow more normally than none Mdfa E-coli.</p>
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- | <p>   Figure 3. Chart of OD value of Mdfa device and control group in different pH</p>
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- | <p> Using OD values to validate the growth of E-coli (with Mdfa) and E-coli (with a promoter and RBS). </p>
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- | <p> Compared with the E-coli with a promoter, E-coli with Mdfa grow more actively in pH9.0 to pH9.5. In the pH9.75 to pH10, none of them grow </p>
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- | <h3>Conclusion</h3>
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- | <p> The result shows Mdfa does work actively in E-coli ,helping tolerate the high pH conditions in a range from pH 9.0 to Ph 9.5.</p>
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- | <h3>DISCUSSION</h3>
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- | BBa_K608002 by iGEM11_Freiburg 2011 is a strong Promoter and strong RBS and it is not related to tolerating alkaline stress, so it will be a good no-treatment control group. </p>
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- | <h5><i>REFERENCES</i></h5>
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- | <ul style="font-size:small">
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- | <li>1. Bolhuis, H., G. Poelarends, H. W. van Veen, B. Poolman, A. J. M. Driessen,
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- | and W. N. Konings. 1995. The lactococcallmrP gene encodes a proton
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- | motive force-dependent drug transporter. J. Biol. Chem. 270:26092–26098.
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- | </li>
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- | <li>2. Grinius, L. L., and E. B. Goldberg. 1994. Bacterial multidrug resistance is
| + | |
- | due to a single membrane protein which functions as a drug pump. J. Biol.
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- | Chem. 269:29998–30004.
| + | |
- | </li>
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- | <li>3. Grinius, L. L., and E. B. Goldberg. 1994. Bacterial multidrug resistance is
| + | |
- | due to a single membrane protein which functions as a drug pump. J. Biol.
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- | Chem. 269:29998–30004.
| + | |
- | </li>
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- | <li>. Etana Padan and Eitan Bibi.. Alkaline pH homeostasis in bacteria: New insights. 2005
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- | Nov;1717(2):67-88
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- | </li>
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- | <li>5.MdfA, an Escherichia coli multidrug resistance protein with an extraordinarily broad spectrum of drug recognition.Edgar R1, Bibi E. J Bacteriol. 1997 Apr;179(7):2274-80.</li>
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- | <li>6. mdfA multidrug efflux system protein [ Escherichia coli str. K-12 substr. MG1655 ]. NC_000913.3</li>
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- | </ul>
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- | </article>
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