Team:Cambridge-JIC

From 2014.igem.org

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<?php
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{{:Team:Cambridge-JIC/Templates/header_prototype3}}
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/**
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<html lang="en">
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* MediaWiki SimpleCalendar Extension
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<head>
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* {{php}}{{Category:Extensions|SimpleCalendar}}
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<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
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* @package MediaWiki
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    <style>
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* @subpackage Extensions
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#contentSub, #footer-box, #catlinks, #search-controls, #p-logo, .printfooter, .firstHeading,.visualClear {display: none;} /*-- hides default wiki settings --*/
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* @author Aran Dunkley [http://www.organicdesign.co.nz/nad User:Nad]
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</style>
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* @licence GNU General Public Licence 2.0 or later
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</head>
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*/
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    <body>
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    <div class="intro-header">
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define('SIMPLECALENDAR_VERSION','1.2.4, 2007-10-18');
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        <div class="container">
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            <div class="row">
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$wgExtensionFunctions[] = 'wfSetupSimpleCalendar';
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                <div class="col-lg-9">
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$wgHooks['LanguageGetMagic'][] = 'wfCalendarLanguageGetMagic';
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                    <div class="intro-message">
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$wgExtensionCredits['parserhook'][] = array(
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                    </div>
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'name'        => 'Simple Calendar',
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                </div>
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'author'      => '[http://www.organicdesign.co.nz/nad User:Nad]',
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            </div>
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'description' => 'A simple calendar extension',
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        </div>
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'url'        => 'http://www.mediawiki.org/wiki/Extension:Simple_Calendar',
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        <!-- /.container -->
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'version'    => SIMPLECALENDAR_VERSION
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    </div>
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);
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    <!-- /.intro-header -->
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function wfCalendarLanguageGetMagic(&$magicWords,$langCode = 0) {
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$magicWords['calendar'] = array(0,'calendar');
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return true;
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}
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-
 
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function wfSetupSimpleCalendar() {
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global $wgParser;
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$wgParser->setFunctionHook('calendar','wfRenderCalendar');
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return true;
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}
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# Renders a table of all the individual month tables
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function wfRenderCalendar(&$parser) {
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$parser->mOutput->mCacheTime = -1;
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-
$argv = array();
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foreach (func_get_args() as $arg) if (!is_object($arg)) {
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if (preg_match('/^(.+?)\\s*=\\s*(.+)$/',$arg,$match)) $argv[$match[1]]=$match[2];
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}
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if (isset($argv['format']))    $f = $argv['format']; else $f = '%e %B %Y';
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if (isset($argv['dayformat'])) $df = $argv['dayformat']; else $df = false;
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if (isset($argv['title']))    $p = $argv['title'].'/'; else $p = '';
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if (isset($argv['query']))    $q = $argv['query'].'&action=edit'; else $q = 'action=edit';
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if (isset($argv['year']))      $y = $argv['year']; else $y = date('Y');
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if (isset($argv['month'])) {
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$m = $argv['month'];
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return wfRenderMonth(strftime('%m',strtotime("$y-$m-01")),$y,$p,$q,$f,$df);
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} else $m = 1;
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$table = "{| class=\"calendar\"\n";
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for ($rows = 3; $rows--; $table .= "|-\n")
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for ($cols = 0; $cols < 4; $cols++)
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$table .= '|'.wfRenderMonth($m++,$y,$p,$q,$f,$df)."\n";
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return "$table\n|}\n";
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}
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# Return a calendar table of the passed month and year
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function wfRenderMonth($m,$y,$prefix = '',$query = '',$format = '%e %B %Y',$dayformat = false) {
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$thisDay  = date('d');
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$thisMonth = date('n');
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$thisYear  = date('Y');
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if (!$d = date('w',$ts = mktime(0,0,0,$m,1,$y))) $d = 7;
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$month = wfMsg(strtolower(strftime('%B',$ts)));
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$days = array();
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foreach (array('M','T','W','T','F','S','S') as $i => $day)
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$days[] = $dayformat ? wfMsg(strftime($dayformat,mktime(0,0,0,2,$i,2000))) : $day;
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$table = "\n{| class=\"month\"\n|- class=\"heading\"\n|colspan=\"7\"|$month\n|- class=\"dow\"\n";
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$table .= '|'.join('||',$days)."\n";
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if ($d > 1) $table .= "|-".str_repeat("\n|&nbsp;\n",$d-1);
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for ($i = $day = $d; $day < 32; $i++) {
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$day = $i - $d + 1;
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if ($day < 29 or checkdate($m,$day,$y)) {
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if ($i%7 == 1) $table .= "\n|-\n";
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$t = ($day == $thisDay and $m == $thisMonth and $y == $thisYear) ? ' class="today"' : '';
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$ttext = $prefix.trim(strftime($format,mktime(0,0,0,$m,$day,$y)));
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$title = Title::newFromText($ttext);
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if (is_object($title)) {
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$class = $title->exists() ? 'day-active' : 'day-empty';
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$url = $title->getFullURL($title->exists() ? '' : $query);
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} else $url = $ttext;
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$table .= "|$t|[$url <span class='$class'>$day</span>]\n";
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}
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}
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return "$table\n|}";
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}
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 {{CSS/Main}}
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<html>
 
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<!--main content -->
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    <div class="content-section-a">
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<table width="70%" align="center">
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        <div class="container">
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            <div class="row">
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                <div class="col-lg-3 col-lg-offset-0 col-sm-push-7  col-sm-6">
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                    <img class="img-responsive" src="https://static.igem.org/mediawiki/2014/5/5e/Round_coin.png" width="300px" alt="">
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                </div>
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                <div class="col-lg-7 col-sm-pull-3  col-sm-6">
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                    <hr class="section-heading-spacer">
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                    <div class="clearfix"></div>
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                    <h2 class="section-heading">mösbi - a plant biosensor for everyone</h2>
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                    <p class="lead"><b>mӧsbi</b> stands for <b>m</b>archantia <b>o</b>pen-<b>s</b>ource <b>bi</b>osensor. mӧsbi encapsulates the team's vision of creating a user-friendly, open-source biosensor using the liverwort <i>Marchantia polymorpha</i>. With its sturdy genetic framework and modularity, mӧsbi represents a new step in popularising synthetic biology and making it accessible to a large audience. Click <a href="https://2014.igem.org/Team:Cambridge-JIC/Project/Overview">here</a> to find out more.</p>
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                </div>
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            </div>
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        </div>
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        <!-- /.container -->
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    </div>
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<!--welcome box -->
 
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<!--
 
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<tr>
 
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<td style="border:1px solid black;" colspan="3" align="center" height="150px" bgColor=#FF404B>
 
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<h1 >WELCOME TO iGEM 2014! </h1>
 
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<p>Your team has been approved and you are ready to start the iGEM season!
 
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<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
 
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<br>
 
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<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:Cambridge-JIC&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
 
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</td>
 
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</tr>
 
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-->
 
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<tr> <td colspan="3"  height="5px"> </td></tr>
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    <!-- /.content-section-b -->
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<!-- end welcome box -->
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    <div class="content-section-b">
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<tr>  
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        <div class="container">
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            <div class="row">
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                <div class="col-lg-7 col-lg-offset-0 col-sm-push-3 col-sm-6">
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                    <hr class="section-heading-spacer">
 +
                    <div class="clearfix"></div>
 +
                    <h2 class="section-heading"><i>Marchantia polymorpha</i> as a new chassis</h2>
 +
                    <p class="lead"> <i><b>Marchantia polymorpha</b></i> is our novel, eukaryotic multicellular chassis. Being a liverwort, it is one of the most primitive land plants around. Its small size and relative genetic simplicity make it easy to work with and an exciting new model organism in synthetic biology. Content to grow on agar plates, marchantia can be bioengineered in a standard lab with minimal extra equipment. Click <a href="https://2014.igem.org/Team:Cambridge-JIC/Marchantia/Background">here</a> to find out more about the plant and our work to develop the chassis; and <a href="https://2014.igem.org/Team:Cambridge-JIC/Guide">here</a> to learn how to get started using <i>Marchantia</i> in your own iGEM project.</p>
 +
                </div>
 +
                <div class="col-lg-3 col-sm-pull-7 col-sm-6">
 +
                    <img class="img-responsive" src="https://static.igem.org/mediawiki/2014/0/07/Cambridge_JIC_Archeg_Fingers_Round.png" alt="" width="300px">
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                </div>
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            </div>
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        </div>
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        <!-- /.container -->
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    </div>
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    <!-- /.content-section-b -->
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<!--navigation menu -->
 
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<td align="center" colspan="3">
 
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<table width="100%">
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    <div class="content-section-a">
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<tr heigth="15px"></tr>
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        <div class="container">
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<tr heigth="75px">  
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            <div class="row">
 +
                <div class="col-lg-3 col-lg-offset-0 col-sm-push-7 col-sm-6">
 +
                    <img class="img-responsive" src="https://static.igem.org/mediawiki/2014/7/72/Round_petri.png" alt="" width="300px">
 +
                </div>
 +
                <div class="col-lg-7 col-sm-pull-3  col-sm-6">
 +
                    <hr class="section-heading-spacer">
 +
                    <div class="clearfix"></div>
 +
                    <h2 class="section-heading">Results</h2>
 +
                    <p class="lead">We successfully transformed hundreds of individual plants, resulting in the first expression of chromoproteins in <i>Marchantia</i>, and probably the first expression of chromoproteins in any plant. We successfully built an arduino-controlled growth chamber, characterised an enzyme new to iGEM and amended the community's knowledge of an existing registry entry. A known <i>Marchantia</i> promoter was also added to the registry, along with 27 candidate promoters from the <i>Marchantia</i>genome. They are part of a <i>Marchantia</i> starter kit part collection that also includes terminators, direction sequences, etc. Finally, we submitted an RFC with collaboration of two other iGEM teams, establishing a unified Type IIS based grammar for plant synthetic biologist: PlantSyntax. Click <a href="https://2014.igem.org/Team:Cambridge-JIC/Results/Lab">here</a> for more result details, and <a href="https://2014.igem.org/Team:Cambridge-JIC/ExecSummary">here</a> for our executive summary.</p>
 +
                </div>
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            </div>
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        </div>
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        <!-- /.container -->
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    </div>
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    <!-- /.content-section-b -->
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<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
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    <div class="content-section-b">
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<a href="https://2014.igem.org/Team:Cambridge-JIC"style="color:#000000">Home </a> </td>
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        <div class="container">
 +
            <div class="row">
 +
                <div class="col-lg-5 col-lg-offset-0 col-sm-push-5  col-sm-6">
 +
                    <hr class="section-heading-spacer">
 +
                    <div class="clearfix"></div>
 +
                    <h2 class="section-heading">Our team</h2>
 +
                    <p class="lead">We are 9 Cambridge science undergraduates from various backgrounds and with all kinds of fascinating and curious interests. Click <a href="https://2014.igem.org/Team:Cambridge-JIC/Team">here</a> to learn more about the team.</p>
 +
                </div>
 +
                <div class="col-lg-5 col-sm-pull-5  col-sm-6">
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                    <img class="img-responsive" src="https://static.igem.org/mediawiki/2014/e/ea/Marchy_Forest_Cambridge-JIC.jpg" alt="">
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                </div>
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            </div>
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        </div>
 +
        <!-- /.container -->
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    </div>
 +
    <!-- /.content-section-b -->
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<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
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<a href="https://2014.igem.org/Team:Cambridge-JIC/Team"style="color:#000000"> Team </a> </td>
 
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<td style="border:1px solid black;" align="center"  height ="45px"  onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
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<a href="https://igem.org/Team.cgi?year=2014&team_name=Cambridge-JIC"style="color:#000000"> Official Team Profile </a></td>
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</body>
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<td style="border:1px solid black;" align="center"  height ="45px"  onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
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</html>
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<a href="https://2014.igem.org/Team:Cambridge-JIC/TimeLine"style="color:#000000"> TimeLine </a></td>
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<td style="border:1px solid black" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
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<a href="https://2014.igem.org/Team:Cambridge-JIC/Project"style="color:#000000"> Project</a></td>
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<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
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<a href="https://2014.igem.org/Team:Cambridge-JIC/Parts"style="color:#000000"> Parts</a></td>
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<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
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<a href="https://2014.igem.org/Team:Cambridge-JIC/Modeling"style="color:#000000"> Modeling</a></td>
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<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
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<a href="https://2014.igem.org/Team:Cambridge-JIC/Notebook"style="color:#000000"> Notebook</a></td>
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<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
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<a href="https://2014.igem.org/Team:Cambridge-JIC/Safety"style=" color:#000000"> Safety </a></td>
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<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
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<a href="https://2014.igem.org/Team:Cambridge-JIC/Attributions"style="color:#000000"> Attributions </a></td>
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<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
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<!--requirements section -->
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<tr><td colspan="3"> <h3> Requirements </h3></td></tr>
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<tr>
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<td width="45%"  valign="top">
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<p> Please be sure to keep these links, your audience will want to find your: </p>
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<!-- Links to other team pages -->
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<ul>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC">Home</a> </li>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC/Team">Team</a> </li>
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<li><a href="https://igem.org/Team.cgi?year=2013&team_name=Cambridge-JIC">Official Team Profile</a> </li>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC/Project">Project</a> </li>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC/Parts">Parts</a> </li>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC/Modeling">Modeling</a> </li>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC/Notebook">Notebook</a> </li>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC/Safety">Safety</a> </li>
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<li><a href="https://2014.igem.org/Team:Cambridge-JIC/Attributions">Attributions</a> </li>
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</ul>
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</td>
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<td > </td>
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<td width="45%">
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<p>There are a few wiki requirements teams must follow:</p>
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<ul>
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<li>All pages, images and files must be hosted on the <a href ="https://2014.igem.org/Special:Upload">  2014.igem.org server</a>. </li>
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<li>All pages must be created under the team’s name space.</li>
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<li>As part of your documentation, keep the links from the menu to the left. </li>
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<li>Do not use flash in wiki code. </li>
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<li>The <a href="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png"> iGEM logo </a> should be placed on the upper part of every page and should link to <a href="https://2014.igem.org/Main_Page">2014.igem.org</a>.</li>
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</ul>
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<p>Visit the <a href="https://2014.igem.org/Wiki_How-To"> Wiki How To page </a> for a complete list of requirements, tips and other useful information. </p>
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<!--tips  -->
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<tr><td colspan="3" > <h3> Tips  </h3></td></tr>
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<tr>
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<td width="45%" valign="top">
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<p>We are currently working on providing teams with some easy to use design templates.
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<br> In the meantime you can also view other team wikis for inspiration! Here are some very good examples</p>
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<ul>
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<li> <a href="https://2013.igem.org/Team:SDU-Denmark/"> 2013 SDU Denmark </a> </li>
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<li> <a href="https://2013.igem.org/Team:SYSU-China">2013 SYSU China</a> </li>
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<li> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_ATCG"> 2013 Shenxhen BGIG ATCG </a></li>
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<li> <a href="https://2013.igem.org/Team:Colombia_Uniandes">2013 Colombia Unianades </a></li>
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<li> <a href="https://2013.igem.org/Team:Lethbridge">2013 Lethbridge</a></li>
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</ul>
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<p>For a full wiki list, you can visit <a href="https://igem.org/Team_Wikis?year=2013">iGEM 2013 web sites </a> and <a href="https://igem.org/Team_Wikis?year=2012">iGEM 2012 web sites</a>  lists. </p>
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</td>
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<td> </td>
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<td width="45%">
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<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
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<ul>
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<li>State your accomplishments! Tell people what you have achieved from the start. </li>
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<li>Be clear about what you are doing and what you plan to do.</li>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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Latest revision as of 01:17, 18 October 2014

Cambridge iGEM 2014

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mösbi - a plant biosensor for everyone

mӧsbi stands for marchantia open-source biosensor. mӧsbi encapsulates the team's vision of creating a user-friendly, open-source biosensor using the liverwort Marchantia polymorpha. With its sturdy genetic framework and modularity, mӧsbi represents a new step in popularising synthetic biology and making it accessible to a large audience. Click here to find out more.

Marchantia polymorpha as a new chassis

Marchantia polymorpha is our novel, eukaryotic multicellular chassis. Being a liverwort, it is one of the most primitive land plants around. Its small size and relative genetic simplicity make it easy to work with and an exciting new model organism in synthetic biology. Content to grow on agar plates, marchantia can be bioengineered in a standard lab with minimal extra equipment. Click here to find out more about the plant and our work to develop the chassis; and here to learn how to get started using Marchantia in your own iGEM project.

Results

We successfully transformed hundreds of individual plants, resulting in the first expression of chromoproteins in Marchantia, and probably the first expression of chromoproteins in any plant. We successfully built an arduino-controlled growth chamber, characterised an enzyme new to iGEM and amended the community's knowledge of an existing registry entry. A known Marchantia promoter was also added to the registry, along with 27 candidate promoters from the Marchantiagenome. They are part of a Marchantia starter kit part collection that also includes terminators, direction sequences, etc. Finally, we submitted an RFC with collaboration of two other iGEM teams, establishing a unified Type IIS based grammar for plant synthetic biologist: PlantSyntax. Click here for more result details, and here for our executive summary.

Our team

We are 9 Cambridge science undergraduates from various backgrounds and with all kinds of fascinating and curious interests. Click here to learn more about the team.

Retrieved from "http://2014.igem.org/Team:Cambridge-JIC"