Team:BUCT-China/small-dialogpj2

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  <a class="expand-btn"><h3>PROJECT</h3></a>
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                                 <h1 style="font-size:36px; top:20px; text-align: center;"><b>overview</b></h1>
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                                 <h1 style="font-size:44px; top:30px; text-align: center;"><b>Biosensors Mining</b></h1>
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                                <p style="text-align:left; color:#333; font-size:10px">There are a population of 884 million still drink water without the previous purification all over the world. There are about 3 billion to 4 billion families lack of drinkable water. Each year about 3.5 million people's deaths are associated with insufficient water supply and sanitation condition, which occurs mainly in developing countries.</p><br><br>
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                                <p style="text-align:left; color:#333; font-size:20px">Quorum sensing was first found in Vibrio fischeri in the ocean. Microorganisms achieve information communication by releasing a signaling molecules referred as auto inducer(AI). AI will promotes related gene expression in bacteria, meanwhile regulate microbes’ biological behaviors. Bacteria use quorum sensing to coordinate certain behaviors such as biofilm formation, virulence, bioluminescence and antibiotic resistance, based on the local density of bacteria. Thus microbes can collaborate to achieve cell populations’s engineering.</p>
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<p style="text-align:left; color:#333">According to all above, the matter of water quality is a great matter of human beings’ life quality. It has always been crucial to many researchers engaging in improving and making breakthroughs on the approaches towards water quality detection. Currently chemical detection methods are more complex and time consuming; besides ,on the way of bringing the samples to the laboratory, some of the indicators may probably be changed. Another thing we may acknowledge is that chemical detection apparatus cost too much money.  </p><br><br>
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  <p style="text-align:left; color:#333; font-size:20px">In Vibrio fischeri , plux promoter regulates the expression of quorum sensing system while plux promoter is automatically regulated by AI. PluxL and pluxR respectively promote transcription to the left and right. PluxL regulates transcription of LuxR gene ;in the meantime, pluxR can also start expression of luxI and fluorescence related genes. LuxI, is responsible for production of N-acyl-homoserine-lactone (AHL) autoinducer while luxR,is activated by this autoinducer to increase transcription of the luciferase operon.</p>
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  <p style="text-align:left; color:#333; font-size:20px">The enhanced E.coli quorum sensing system we reconstructed is greatly dependent to plac promoter. Plac will serve as pluxL in this system to promote transcription. Once the transcription has been started by plac, it will extend to series genes such as luxR、pluxR and luxI downstream. Noticeably, the LuxI/LuxR genes form a functional pair, considering LuxI as the auto-inducer synthase and LuxR as the receptor. We can obtain translation products luxI to catalyze the formation of AHL.</p>
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<p style="text-align:left; color:#333; font-size:10px">Based on the matters above, this year we intended to look for a new way using biotechnology. Here come the ideas, through two kinds of approaches we may achieve rapid water quality detection. One of the approaches is so called comprehensive detection, here we mainly rely on LuxAB ,which encodes a kind of luciferase. Because anything toxic within the water may have a negative impact on the activity of luciferase, the luminescence is likely to be decreased. The other is specific detection, because only in this way can we successfully quantify specific metal ions like Hg(II). One sequence of MerR operon occupies a significant position along with quorum sensing system. In addition, we use gfp as reporter.</p><br><br>
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  <p style="text-align:left; color:#333; font-size:20px">The yield of luxI protein is very low with a tenuous concentration of cells, likewise result in the subtle concentration of AHL in periplasmic. As the amount of cells increases, the density of AHL will reach a threshold value, this can strongly accelerate the formation of one kind of complex which is composed of AHL and luxR , also the complex will firmly promotes transcription of pluxR ,hence we acquire desired expression of bioluminescence related genes as well as increasing amount of luxI、luxR、AHL, which in turn form a positive regulation. In addition, plac is a fully functional part which act as a substitution to pluxL, preventing pluxL from inhibition of the AHL-LuxR complex, what’s more, releasing the negative influence on the expression of LuxR.</p>
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<p style="text-align:left; color:#333; font-size:10px">Besides the two biosensors we built, the joint uses of microfluidic chips, automatic detection devices, photoelectric detection technology and micro total analysis systems will extremely promote biological detection method. This device can also be linked to the computer and has the ability of offline CNC screen operation, which improves the detection efficiency. What’s more, little device is convenient to carry and free from limitation of experimental conditions.</p><br><br>
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<p style="text-align:left; color:#333; font-size:10px">Biological method not only has the priority of concise operations and less consumption, but also has the advantages of high accuracy, specificity, and security.</p><br><br>
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  <p style="text-align:left; color:#333; font-size:20px">Based on this enhanced E.coli quorum sensing system, we got a innovative method for specific metal ions detection. The highlight is that we combine MerR and relevant promoter sequence pMerT to the downstream of luxI. The MerR family of metal-binding, metal-responsive proteins is unique in that they activate transcription from unusual promoters and coordinate metals through cysteine residues. They have conserved primary structures yet can effectively discriminate metals in vivo. Expression of MerR (in the absence of MerR and Hg (II) in the cell) proceeds from the PmerR promoter.  
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In the absence of Hg(II), the MerR homodimer binds to the operator region within  the divergent  promoter  with binding centered on the dyad symmetrical DNA sequence between the -35 and -10 sequences of  PmerT, slightly repressing transcription of the structural gene promoter, and repressing transcription of merR from the PmerR promoter.  
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Once the MerR homodimer has bound to merOP, recruitment of RNAP to the mer promoter occurs , and MerR has been shown to cross-link to several subunits of RNAP . </p>
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<p style="text-align:center; color:#333; font-size:20px"><img src="https://static.igem.org/mediawiki/2014/9/9e/JL1.png" alt="" align="absmiddle" /></p>
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  <p style="text-align:left; color:#333; font-size:20px">In the presence of mercuric ions, one Hg(II) per MerR homodimer coordinates in a trigonal manner to three essential cysteine residues of the MerR homodimer, two cysteines from one monomer, and one from the other. Hg(II) binding to the MerR homodimer results in both a relaxation of the DNA bends induced by apo-MerR, and both DNA distortion and an allosteric under winding of the promoter sequence by approximately 33. The under winding of the promoter DNA aligns the -10 and -35 sequences, such that RNA polymerase can recognize and bind to these sites, initiating transcription from PmerT .</p>
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<p style="text-align:center; color:#333; font-size:20px"><img src="https://static.igem.org/mediawiki/2014/f/f2/JL2.png" alt="" align="absmiddle" /></p>
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  <p style="text-align:left; color:#333; font-size:20px">The reporter gene we apply is gfp ,which also depends on the transcription of the same promoter pMerT.</p>
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  <p style="text-align:left; color:#333; font-size:20px">According to the design, we intended to make best use of the recombinant E.coli quorum sensing system to increase the bacteria density to a threshold value and produce a sufficient amount of AHL and LuxR protein, forming a continuous positive feedback. Meanwhile, there supposed to be a “switch” referred as MerR and pMerT. Only the presence of Hg(II) do drive the expression of structural genes and fluorescence related gene. Moreover, the fluorescence intensity should theoretically link a certain correlation to the concentration of Hg(II) in internal condition. For the purpose of continuous detection, what should not be ignored is that we desire enough MerR homodimer to bind to pMerT then interdict the transcription pathway. This clarifies the second aspect of recombinant E.coli quorum sensing system. Concluded, we designed this innovative system intending to get a fasten detection method towards specific metal ions in vivo.
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Latest revision as of 17:21, 17 October 2014


BUCT-CHINA

PROJECT

Biosensors Mining


Quorum sensing was first found in Vibrio fischeri in the ocean. Microorganisms achieve information communication by releasing a signaling molecules referred as auto inducer(AI). AI will promotes related gene expression in bacteria, meanwhile regulate microbes’ biological behaviors. Bacteria use quorum sensing to coordinate certain behaviors such as biofilm formation, virulence, bioluminescence and antibiotic resistance, based on the local density of bacteria. Thus microbes can collaborate to achieve cell populations’s engineering.

In Vibrio fischeri , plux promoter regulates the expression of quorum sensing system while plux promoter is automatically regulated by AI. PluxL and pluxR respectively promote transcription to the left and right. PluxL regulates transcription of LuxR gene ;in the meantime, pluxR can also start expression of luxI and fluorescence related genes. LuxI, is responsible for production of N-acyl-homoserine-lactone (AHL) autoinducer while luxR,is activated by this autoinducer to increase transcription of the luciferase operon.

The enhanced E.coli quorum sensing system we reconstructed is greatly dependent to plac promoter. Plac will serve as pluxL in this system to promote transcription. Once the transcription has been started by plac, it will extend to series genes such as luxR、pluxR and luxI downstream. Noticeably, the LuxI/LuxR genes form a functional pair, considering LuxI as the auto-inducer synthase and LuxR as the receptor. We can obtain translation products luxI to catalyze the formation of AHL.

The yield of luxI protein is very low with a tenuous concentration of cells, likewise result in the subtle concentration of AHL in periplasmic. As the amount of cells increases, the density of AHL will reach a threshold value, this can strongly accelerate the formation of one kind of complex which is composed of AHL and luxR , also the complex will firmly promotes transcription of pluxR ,hence we acquire desired expression of bioluminescence related genes as well as increasing amount of luxI、luxR、AHL, which in turn form a positive regulation. In addition, plac is a fully functional part which act as a substitution to pluxL, preventing pluxL from inhibition of the AHL-LuxR complex, what’s more, releasing the negative influence on the expression of LuxR.

Based on this enhanced E.coli quorum sensing system, we got a innovative method for specific metal ions detection. The highlight is that we combine MerR and relevant promoter sequence pMerT to the downstream of luxI. The MerR family of metal-binding, metal-responsive proteins is unique in that they activate transcription from unusual promoters and coordinate metals through cysteine residues. They have conserved primary structures yet can effectively discriminate metals in vivo. Expression of MerR (in the absence of MerR and Hg (II) in the cell) proceeds from the PmerR promoter. In the absence of Hg(II), the MerR homodimer binds to the operator region within the divergent promoter with binding centered on the dyad symmetrical DNA sequence between the -35 and -10 sequences of PmerT, slightly repressing transcription of the structural gene promoter, and repressing transcription of merR from the PmerR promoter. Once the MerR homodimer has bound to merOP, recruitment of RNAP to the mer promoter occurs , and MerR has been shown to cross-link to several subunits of RNAP .

In the presence of mercuric ions, one Hg(II) per MerR homodimer coordinates in a trigonal manner to three essential cysteine residues of the MerR homodimer, two cysteines from one monomer, and one from the other. Hg(II) binding to the MerR homodimer results in both a relaxation of the DNA bends induced by apo-MerR, and both DNA distortion and an allosteric under winding of the promoter sequence by approximately 33. The under winding of the promoter DNA aligns the -10 and -35 sequences, such that RNA polymerase can recognize and bind to these sites, initiating transcription from PmerT .

The reporter gene we apply is gfp ,which also depends on the transcription of the same promoter pMerT.

According to the design, we intended to make best use of the recombinant E.coli quorum sensing system to increase the bacteria density to a threshold value and produce a sufficient amount of AHL and LuxR protein, forming a continuous positive feedback. Meanwhile, there supposed to be a “switch” referred as MerR and pMerT. Only the presence of Hg(II) do drive the expression of structural genes and fluorescence related gene. Moreover, the fluorescence intensity should theoretically link a certain correlation to the concentration of Hg(II) in internal condition. For the purpose of continuous detection, what should not be ignored is that we desire enough MerR homodimer to bind to pMerT then interdict the transcription pathway. This clarifies the second aspect of recombinant E.coli quorum sensing system. Concluded, we designed this innovative system intending to get a fasten detection method towards specific metal ions in vivo.