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| | <ul class="menu"> | | <ul class="menu"> |
| | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union"> Home </a> </li> | | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union"> Home </a> </li> |
| - | <li class="menu"> Project | + | <li class="menu-project"> Project |
| | <ul class="menu"> | | <ul class="menu"> |
| | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/TdT_project">De Novo Synthesis </a></li> | | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/TdT_project">De Novo Synthesis </a></li> |
| - | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Telomere_project">Programmable Lifespan</a> </li> | + | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Telomere_project">Programmable Lifespan Timer</a> </li> |
| | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Biohack_project">Biohacker Kit </a></li> | | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Biohack_project">Biohacker Kit </a></li> |
| | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Hardware">OpenSource Hardware </a> </li> | | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Hardware">OpenSource Hardware </a> </li> |
| | + | <!--<li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Modeling">Modeling </a> </li>--> |
| | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Parts">BioBrick Parts </a></li> | | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Parts">BioBrick Parts </a></li> |
| - | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Modeling">Modeling </a> </li>
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| | </ul> | | </ul> |
| | </li> | | </li> |
| - | <li class="menu"> <a class="menu" href="https://igem.org/Safety/Safety_Form?team_id=1354">Safety</a> </li> | + | <li class="menu-safety"> Social |
| - | <li class="menu"><a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Outreach"> Outreach </a></li> | + | <ul class="menu"> |
| - | <li class="menu"> Notebook | + | <li class="menu"><a class="menu" href="https:// 2014.igem.org /Team:Cooper_Union/Safety ">Safety</ a> </li> |
| | + | <li class="menu"><a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Ethics">Ethics</a> </li> |
| | + | <li class="menu"><a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Outreach">Outreach </a> </li> |
| | + | </ul> |
| | + | </li> |
| | + | <li class="menu-notebook"> Notebook |
| | <ul class="menu"> | | <ul class="menu"> |
| | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Protocols">Commonly Used Protocols </li> | | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/Protocols">Commonly Used Protocols </li> |
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| | </ul> | | </ul> |
| | </li> | | </li> |
| - | <li class="menu"> Team | + | <li class="menu-team"> Team |
| | <ul class="menu"> | | <ul class="menu"> |
| | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/biofanfic">Members </a> </li> | | <li class="menu"> <a class="menu" href="https://2014.igem.org/Team:Cooper_Union/biofanfic">Members </a> </li> |
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| | </div> | | </div> |
| | + | <br> |
| | + | <hr> |
| | + | <br> |
| | <div class="text"> | | <div class="text"> |
| | <!-----Add content below----> | | <!-----Add content below----> |
| | + | <br><br> |
| | + | <h2>Tested, Submitted BioBrick Parts</h2><br> |
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| | + | <div id='groupparts' style='min-height:100px;width:700px;'><div style='width:300px;margin:2px;padding:20px;color:gray;border:1px solid gray'>Loading.....</div></div><script>$('#groupparts').load('/cgi/api/groupparts.cgi', { t:'iGEM014', g:'Cooper_Union' },function(){ $('#groupparts .tablesorter').tablesorter();} );</script> |
| | | | |
| - | <!--Parts Submitted to the Registry --> | + | <br><br> |
| - | <tr><td > <h3> Parts Submitted to the Registry </h3></td> | + | <h2>Planned Parts</h2> |
| - | <td ></td > | + | |
| - | <td > <h3>What information do I need to start putting my parts on the Registry? </h3></td>
| + | |
| - | </tr>
| + | |
| - | <tr>
| + | |
| - | <td width="45%" valign="top">
| + | |
| - | <p>
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| - | An important aspect of the iGEM competition is the use and creation of standard biological parts. Each team will make new parts during iGEM and will submit them to the <a href="http://partsregistry.org"> Registry of Standard Biological Parts</a>. The iGEM software provides an easy way to present the parts your team has created. The "groupparts" tag will generate a table with all of the parts that your team adds to your team sandbox.
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| - | <p> | + | The scope of our project may be vast, but we only submitted parts we were able to successfully characterize. A lot of other components were considered from each sub-project that did not make it due to time constraints (and a bit of Murphy's Law). |
| - | <strong>Note that if you want to document a part you need to document it on the <a href="http://partsregistry.org Registry"> Registry</a>, not on your team wiki.</strong> Future teams and other users and are much more likely to find parts on the Registry than on your team wiki. | + | <br><br>For De Novo Project, primers for truncated TdT enzymes with the BioBrick prefixes were synthesized and used. Referring to the literature, first 81bp, 429bp, and 450bp of TdT were deleted to see the change in efficiency of the TdT's enzymatic function. <br><br>The Programmable Lifespan Timer had a collection of genes knocked out, including EST2, MAK31 and RAD52<br><br> |
| - | </p> | + | This summer, four more inputs and outputs were built by The Cooper Union Summer STEM iGEM high school students. The promoters they used were induced by the presence of arsenic, arabinose, lactone and glucose, and the outputs were RFP, YFP, blue chromoprotein, and turquoise chromoprotein. Some of these systems were designed for practical, real world applications - to detect poisons or help control diabetes by measuring glucose levels. |
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| - | <p>
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| - | Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without a need to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.
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| - | </p>
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| | + | <!-- |
| | + | xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx |
| | + | DO NOT EDIT BELOW HERE |
| | + | xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx --> |
| | + | </div> |
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| - | <h3>When should you put parts into the Registry?</h3> | + | <br> |
| | + | <br> |
| | + | <hr> |
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| - | <p>
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| - | As soon as possible! We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better recall you will have of all details surrounding your parts. Remember you don't need to send us the DNA to create an entry for a part on the Registry. However, you must send us the sample/DNA before the Jamboree. Only parts for which you have sent us samples/DNA are eligible for awards and medal requirements.
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| - | </p>
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| - | </td>
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| | | | |
| - | <td > </td>
| + | </div> |
| - | <td width="45%" valign="top">
| + | |
| | | | |
| - | <p>
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| - | The information needed to initially create a part on the Registry is:
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| - | </p>
| |
| - | <ol>
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| | | | |
| - | <li>Part Name</li>
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| - | <li>Part type</li>
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| - | <li>Creator</li>
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| - | <li>Sequence</li>
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| - | <li>Short Description (60 characters on what the DNA does)</li>
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| - | <li>Long Description (Longer description of what the DNA does)</li>
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| - | <li>Design considerations</li>
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| - | </ol>
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| | | | |
| - | <p>
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| - | We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. Check out part <a href="http://parts.igem.org/Part:BBa_K404003">BBa_K404003</a> for an excellent example of a highly characterized part.
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| - | </p>
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| | | | |
| - | <p> | + | <div class="cu-footer"> |
| - | You can add parts to the Registry at our <a href=" http:// parts.igem.org/ Add_a_Part_to_the_Registry"> Add a Part to the Registry</a> link. | + | <div class="bottom-left"> |
| - | </p> | + | <a href=" https:// 2014.igem.org/ Team:Cooper_Union" span="The Cooper Union: μToolbox"> <img src="https://static.igem.org/mediawiki/2014/b/bd/CU_2014_logo.png" height="150" /></a ></ div> |
| - | </td> | + | <div class="bottom-center"> |
| - | </tr> | + | <a href="https://2014.igem.org/Team:Cooper_Union/Project" class="black" > |
| | + | <img src="https://static.igem.org/mediawiki/2014/2/27/CU_2014_LogoP.png" height="100" style="vertical-align: top;" title="Projects" /> |
| | + | <span>Projects</span> |
| | + | </a> |
| | + | <a href="https://2014.igem.org/Team:Cooper_Union/Social" class="red" > |
| | + | <img src="https://static.igem.org/mediawiki/2014/b/b2/CU_2014_logoS.png" height="100" style="vertical-align: top;" title="Social" /> |
| | + | <span>Social</span> |
| | + | </a> |
| | + | <a href="https://2014.igem.org/Team:Cooper_Union/Notebook" class="green" > |
| | + | <img src="https://static.igem.org/mediawiki/2014/d/da/CU_2014_LogoN.png" height="100" style="vertical-align: top;" title="Notebook" /> |
| | + | <span>Notebook</span> |
| | + | </a> |
| | + | <a href="https://2014.igem.org/Team:Cooper_Union/biofanfic"class="blue"> |
| | + | <img src="https://static.igem.org/mediawiki/2014/3/38/CU_2014_LogoT.png" height="100" style="vertical-align: top;" title="Team" /> |
| | + | <span>Team</span> |
| | + | </a> |
| | + | </div> |
| | + | <div class="bottom-right"> |
| | + | <a href="http://www.cooper.edu" target="_blank" span="The Cooper Union"><img src="https://static.igem.org/mediawiki/2014/9/90/CU_2014_Cooper_union_logo.png" height="150" /></a> |
| | + | </div> |
| | + | </div> |
| | | | |
| | | | |
| - | <tr> <td colspan="3" height="15px"> </td></tr>
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| | | | |
| - | <tr><td colspan="3" > <h3> Parts Table</h3></td></tr>
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| | | | |
| - | | + | </body> |
| - | <tr><td width="45%" colspan="3" valign="top">
| + | |
| - | Any parts your team has created will appear in this table below:</td></tr>
| + | |
| - | | + | |
| - | </table> | + | |
| | </html> | | </html> |
| - |
| |
| - | <groupparts>iGEM014 Cooper_Union</groupparts>
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