Team:Brasil-SP/Notebook/CharacterizationAssemblies
From 2014.igem.org
(15 intermediate revisions not shown) | |||
Line 1: | Line 1: | ||
- | {{ | + | {{:Team:Brasil-SP/Templates/Header}} |
<html> | <html> | ||
<head> | <head> | ||
+ | <style> | ||
+ | b.dashed {border-style: dashed;} | ||
+ | </style> | ||
+ | <style> | ||
+ | b:hover { | ||
+ | border:2px; #d7ccea; | ||
+ | border-style: dashed; | ||
+ | |||
+ | } | ||
+ | </style> | ||
<!--main content --> | <!--main content --> | ||
Line 23: | Line 33: | ||
<table width="70%" align="center"> | <table width="70%" align="center"> | ||
<td colspan="2" align = center> | <td colspan="2" align = center> | ||
+ | |||
+ | <!-- imagemap1--> | ||
<style type="text/css"> | <style type="text/css"> | ||
- | .map_image { display: block; width: | + | .map_image { display: block; width: 336px; height: 166px; position: relative; background-position: 0 0; background-repeat: no-repeat; } |
.map_image .map_link { display: block; position: absolute; text-indent: -999em; overflow: hidden; } | .map_image .map_link { display: block; position: absolute; text-indent: -999em; overflow: hidden; } | ||
- | .map_image #map_link_0 { width: | + | .map_image #map_link_0 { width: 304px; height: 156px; top: 5px; left: 1px; } |
</style> | </style> | ||
- | <div class="map_image" style="background-image: url('https://static.igem.org/mediawiki/2014/ | + | <div class="map_image" style="background-image: url('https://static.igem.org/mediawiki/2014/5/59/KI_w_2.png');"> |
- | < | + | <b class="map_link" id="map_link_0" title="" href="https://static.igem.org/mediawiki/2014/9/90/KI.pdf">KI</b> |
</div> | </div> | ||
- | |||
Line 39: | Line 50: | ||
<img src="https://static.igem.org/mediawiki/2014/e/ef/Glowing_E_coli.JPG" width="400px" height="200px"/> | <img src="https://static.igem.org/mediawiki/2014/e/ef/Glowing_E_coli.JPG" width="400px" height="200px"/> | ||
<p><strong>Results</strong>: After the incubation period of the transformed <em>E. coli</em> a large portion of the colonies were glowing green. So the promoter does work. Moreover, this biobrick works on <em>E. coli</em> despite the fact it was designed for <em>B. subtilis</em>.</p> | <p><strong>Results</strong>: After the incubation period of the transformed <em>E. coli</em> a large portion of the colonies were glowing green. So the promoter does work. Moreover, this biobrick works on <em>E. coli</em> despite the fact it was designed for <em>B. subtilis</em>.</p> | ||
- | <td> | + | </td> |
</table> | </table> | ||
Line 46: | Line 57: | ||
<!--Início Promoter BBa_K143015 --> | <!--Início Promoter BBa_K143015 --> | ||
- | <div align=center> | + | <div align="center"> |
<h2>Promoter BBa_K143015</h2> | <h2>Promoter BBa_K143015</h2> | ||
<p><strong>Question</strong>: How does the transcription caused by this promoter varies with the IPTG induction?</p> | <p><strong>Question</strong>: How does the transcription caused by this promoter varies with the IPTG induction?</p> | ||
+ | |||
+ | <!--imagemap2--> | ||
+ | <style type="text/css"> | ||
+ | .map_image_b { display: block; width: 660px; height: 406px; position: relative; background-position: 0 0; background-repeat: no-repeat; } | ||
+ | .map_image_b .map_link_b { display: block; position: absolute; text-indent: -999em; overflow: hidden; } | ||
+ | .map_image_b #map_link_0_b { width: 301px; height: 146px; top: 20px; left: 1px; } | ||
+ | .map_image_b #map_link_1_b { width: 280px; height: 152px; top: 16px; left: 359px; } | ||
+ | </style> | ||
+ | <div class="map_image_b" style="background-image: url('https://static.igem.org/mediawiki/2014/8/8c/KXVI_w_2.png');"> | ||
+ | <b class="map_link_b" id="map_link_0_b" title="" href="https://static.igem.org/mediawiki/2014/3/3d/KV.pdf">KV</b> | ||
+ | <b class="map_link_b" id="map_link_1_b" title="" href="https://static.igem.org/mediawiki/2014/e/ea/BIII.pdf">BIII</b> | ||
+ | </div> | ||
+ | |||
</div> | </div> | ||
Line 56: | Line 80: | ||
- | <div align=center> | + | <div align="center"> |
<h2>Tunning of the QteE Threshold</h2> | <h2>Tunning of the QteE Threshold</h2> | ||
Line 63: | Line 87: | ||
<p>This is the most difficult task of our project. Tunning the production of QteE so that we establish the correct threshold for the discretization of the Cystatin C level in serum. To attack this challenge we designed 3 circuits so that we could plot a calibration curve. In this circuits we put the transcription of the LasR and QteE under two differnt promoters, the Pveg (BBa_K823003) and PlasR (BBa_K143015).</p> | <p>This is the most difficult task of our project. Tunning the production of QteE so that we establish the correct threshold for the discretization of the Cystatin C level in serum. To attack this challenge we designed 3 circuits so that we could plot a calibration curve. In this circuits we put the transcription of the LasR and QteE under two differnt promoters, the Pveg (BBa_K823003) and PlasR (BBa_K143015).</p> | ||
+ | </div> | ||
- | + | <br> | |
- | + | <br> | |
- | + | <br> | |
- | + | <br> | |
- | + | <br> | |
- | + | <br> | |
- | + | ||
- | + | <!--imagemap3--> | |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | </div> | + | <div align=center> |
+ | |||
+ | <style type="text/css"> | ||
+ | .map_image_c { display: block; width: 800px; height: 499px; position: relative; background-position: 0 0; background-repeat: no-repeat; } | ||
+ | .map_image_c .map_link_c { display: block; position: absolute; text-indent: -999em; overflow: hidden; } | ||
+ | .map_image_c #map_link_0_c { width: 139px; height: 96px; top: 24px; left: 1px; } | ||
+ | .map_image_c #map_link_1_c { width: 398px; height: 102px; top: 20px; left: 159px; } | ||
+ | .map_image_c #map_link_2_c { width: 128px; height: 100px; top: 19px; left: 590px; } | ||
+ | .map_image_c #map_link_3_c { width: 486px; height: 107px; top: 202px; left: 55px; } | ||
+ | .map_image_c #map_link_4_c { width: 140px; height: 94px; top: 151px; left: 616px; } | ||
+ | .map_image_c #map_link_5_c { width: 577px; height: 110px; top: 376px; left: 131px; } | ||
+ | </style> | ||
+ | <div class="map_image_c" style="background-image: url('https://static.igem.org/mediawiki/2014/3/3d/KXIII_w2.png');"> | ||
+ | <b class="map_link_c" id="map_link_0_c" title="" href="https://static.igem.org/mediawiki/2014/b/b3/KII.pdf">KII</b> | ||
+ | <b class="map_link_c" id="map_link_1_c" title="" href="https://static.igem.org/mediawiki/2014/a/a3/CII.pdf">CII</b> | ||
+ | <b class="map_link_c" id="map_link_2_c" title="" href="https://static.igem.org/mediawiki/2014/9/95/KIV.pdf">KIV</b> | ||
+ | <b class="map_link_c" id="map_link_3_c" title="" href=""></b> | ||
+ | <b class="map_link_c" id="map_link_4_c" title="" href="https://static.igem.org/mediawiki/2014/9/9c/KXI.pdf">KXI</b> | ||
+ | <b class="map_link_c" id="map_link_5_c" title="" href=""></b> | ||
+ | </div> | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | <!--imagemap4--> | ||
+ | |||
+ | <style type="text/css"> | ||
+ | .map_image_d { display: block; width: 800px; height: 412px; position: relative; background-position: 0 0; background-repeat: no-repeat; } | ||
+ | .map_image_d .map_link_d { display: block; position: absolute; text-indent: -999em; overflow: hidden; } | ||
+ | .map_image_d #map_link_0_d { width: 137px; height: 82px; top: 19px; left: 1px; } | ||
+ | .map_image_d #map_link_1_d { width: 399px; height: 80px; top: 19px; left: 160px; } | ||
+ | .map_image_d #map_link_2_d { width: 131px; height: 80px; top: 18px; left: 588px; } | ||
+ | .map_image_d #map_link_3_d { width: 483px; height: 88px; top: 167px; left: 57px; } | ||
+ | .map_image_d #map_link_4_d { width: 143px; height: 80px; top: 124px; left: 610px; } | ||
+ | .map_image_d #map_link_5_d { width: 575px; height: 93px; top: 311px; left: 130px; } | ||
+ | </style> | ||
+ | <div class="map_image_d" style="background-image: url('https://static.igem.org/mediawiki/2014/f/fa/KXIV_w2.png');"> | ||
+ | <b class="map_link_d" id="map_link_0_d" title="" href="https://static.igem.org/mediawiki/2014/7/78/KIII.pdf">KIII</b> | ||
+ | <b class="map_link_d" id="map_link_1_d" title="" href="https://static.igem.org/mediawiki/2014/a/a3/CII.pdf">CII</b> | ||
+ | <b class="map_link_d" id="map_link_2_d" title="" href="https://static.igem.org/mediawiki/2014/9/95/KIV.pdf">AIV</b> | ||
+ | <b class="map_link_d" id="map_link_3_d" title="" href="https://static.igem.org/mediawiki/2014/9/95/KX.pdf">KX</b> | ||
+ | <b class="map_link_d" id="map_link_4_d" title="" href=""></b> | ||
+ | <b class="map_link_d" id="map_link_5_d" title="" href=""></b> | ||
+ | </div> | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | <!--imagemap5--> | ||
+ | |||
+ | <style type="text/css"> | ||
+ | .map_image_e { display: block; width: 800px; height: 412px; position: relative; background-position: 0 0; background-repeat: no-repeat; } | ||
+ | .map_image_e .map_link_e { display: block; position: absolute; text-indent: -999em; overflow: hidden; } | ||
+ | .map_image_e #map_link_0_e { width: 137px; height: 82px; top: 19px; left: 1px; } | ||
+ | .map_image_e #map_link_1_e { width: 399px; height: 80px; top: 19px; left: 160px; } | ||
+ | .map_image_e #map_link_2_e { width: 131px; height: 80px; top: 18px; left: 588px; } | ||
+ | .map_image_e #map_link_3_e { width: 483px; height: 88px; top: 167px; left: 57px; } | ||
+ | .map_image_e #map_link_4_e { width: 143px; height: 80px; top: 124px; left: 610px; } | ||
+ | .map_image_e #map_link_5_e { width: 575px; height: 93px; top: 311px; left: 130px; } | ||
+ | </style> | ||
+ | <div class="map_image_e" style="background-image: url('https://static.igem.org/mediawiki/2014/3/3a/KXV_w2.png');"> | ||
+ | <b class="map_link_e" id="map_link_0_e" title="" href="https://static.igem.org/mediawiki/2014/7/78/KIII.pdf">KIII</b> | ||
+ | <b class="map_link_e" id="map_link_1_e" title="" href="https://static.igem.org/mediawiki/2014/a/a3/CII.pdf">CII</b> | ||
+ | <b class="map_link_e" id="map_link_2_e" title="" href="https://static.igem.org/mediawiki/2014/e/eb/AIV.pdf">AIV</b> | ||
+ | <b class="map_link_e" id="map_link_3_e" title="" href="https://static.igem.org/mediawiki/2014/9/95/KX.pdf">KX</b> | ||
+ | <b class="map_link_e" id="map_link_4_e" title="" href=""></b> | ||
+ | <b class="map_link_e" id="map_link_5_e" title="" href=""></b> | ||
+ | </div> | ||
+ | |||
+ | <!--end huge figure--> | ||
</html> | </html> | ||
+ | |||
+ | {{:Team:Brasil-SP/Templates/Footer}} |
Latest revision as of 17:03, 13 October 2014
KI
|
Results: After the incubation period of the transformed E. coli a large portion of the colonies were glowing green. So the promoter does work. Moreover, this biobrick works on E. coli despite the fact it was designed for B. subtilis. |
Promoter BBa_K143015
Question: How does the transcription caused by this promoter varies with the IPTG induction?
Tunning of the QteE Threshold
Question:What are the concentration of QteE needed to hamper the LasR induction of the promoter PlasR?
This is the most difficult task of our project. Tunning the production of QteE so that we establish the correct threshold for the discretization of the Cystatin C level in serum. To attack this challenge we designed 3 circuits so that we could plot a calibration curve. In this circuits we put the transcription of the LasR and QteE under two differnt promoters, the Pveg (BBa_K823003) and PlasR (BBa_K143015).