Template:Kyoto/Notebook/Magnetosome
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<div> | <div> | ||
- | <a name=" | + | <a name="0822" class="kyoto-jump"></a> |
<h3>8/22</h3> | <h3>8/22</h3> | ||
<h4>Miniprep</h4> | <h4>Miniprep</h4> | ||
Line 1,303: | Line 1,303: | ||
<table> | <table> | ||
<tr><th>NameⅠ</th></tr> | <tr><th>NameⅠ</th></tr> | ||
- | <tr><td>9/14 Transformation Pcon+mamL+ | + | <tr><td>9/14 Transformation Pcon+mamL+SBpSB1C3 Colony_1</td></tr> |
<tr><td>9/14 Transformation mamB+pSB1C3 Colony_9</td></tr> | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_9</td></tr> | ||
</table> | </table> | ||
Line 2,218: | Line 2,218: | ||
<h4>Western Blotting</h4> | <h4>Western Blotting</h4> | ||
<p><span class="kyoto-author">Honda</span></p> | <p><span class="kyoto-author">Honda</span></p> | ||
- | |||
- | |||
<p>Make the 20% acrilamid gel apray the following</p> | <p>Make the 20% acrilamid gel apray the following</p> | ||
<table> | <table> | ||
<tr><th>Lane</th><th>Sample</th></tr> | <tr><th>Lane</th><th>Sample</th></tr> | ||
<tr><td>1-5 9-12</td><td>Sample buffer</td></tr> | <tr><td>1-5 9-12</td><td>Sample buffer</td></tr> | ||
- | <tr><td>6</td><td>T7-RBS- | + | <tr><td>6</td><td>T7-RBS-pSB1C3(control)</td></tr> |
- | <tr><td>7</td><td>pL( | + | <tr><td>7</td><td>pL(pSB1C3)</td></tr> |
<tr><td>8</td><td>protein marker</td></tr> | <tr><td>8</td><td>protein marker</td></tr> | ||
</table> | </table> | ||
+ | <p>Electrophoresis:200V 25mA 30min</p> | ||
+ | <p>Transcription:50V 200mA 73min</p> | ||
<h4>Liquid Culture</h4> | <h4>Liquid Culture</h4> | ||
Line 2,271: | Line 2,271: | ||
</table> | </table> | ||
</div> | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0930" class="kyoto-jump"></a> | ||
+ | <h3>9/30</h3> | ||
+ | <h4>Miniprep</h4> | ||
+ | <p><span class="kyoto-author">Tatsui</span></p> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/29 Liquid Culture pLQB</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/29 Liquid Culture pLQ</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Western Blotting</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <p>Make the 20% acrilamid gel apray the following</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>Sample</th></tr> | ||
+ | <tr><td>2</td><td>Marker</td></tr> | ||
+ | <tr><td>3</td><td>pLQB</td></tr> | ||
+ | <tr><td>4</td><td>pLQ</td></tr> | ||
+ | <tr><td>5</td><td>pL</td></tr> | ||
+ | <tr><td>6</td><td>pQ-3</td></tr> | ||
+ | <tr><td>7</td><td>pQ-5</td></tr> | ||
+ | <tr><td>8</td><td>pB</td></tr> | ||
+ | <tr><td>9</td><td>GTP-His</td></tr> | ||
+ | <tr><td>10</td><td>T7-RBS-pSB1C3(control)</td></tr> | ||
+ | <tr><td>11</td><td>Sample buffer</td></tr> | ||
+ | </table> | ||
+ | <p>Electrophoresis:200V 25mA 1h30min</p> | ||
+ | <p>Transcription:50V 200mA 73min</p> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>9/22 master pLQB</td></tr> | ||
+ | <tr><td>9/22 master pQ(3)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1001" class="kyoto-jump"></a> | ||
+ | <h3>10/1</h3> | ||
+ | <h4>Ethanol Precipitation</h4> | ||
+ | <p><span class="kyoto-author">Tatsui</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>9/28 pL(pSB1C3)(VF)(Miniprep product)</td></tr> | ||
+ | <tr><td>9/28 pL(pSB1C3)(VR)(Miniprep product)</td></tr> | ||
+ | <tr><td>9/22 pB(22)(VF)(Miniprep product)</td></tr> | ||
+ | <tr><td>9/22 pB(22)(VR)(Miniprep product)</td></tr> | ||
+ | <tr><td>9/22 pB(23)(VF)</td></tr> | ||
+ | <tr><td>9/22 pB(23)(VR)</td></tr> | ||
+ | <tr><td>10/1 pQ(3)(VF)(Miniprep product)</td></tr> | ||
+ | <tr><td>10/1 pQ(3)(VR)(Miniprep product)</td></tr> | ||
+ | <tr><td>10/1 pLQB(VF)(Miniprep product)</td></tr> | ||
+ | <tr><td>10/1 pLQB(seq-1)(Miniprep product)</td></tr> | ||
+ | <tr><td>10/1 pLQB(seq-2)(Miniprep product)</td></tr> | ||
+ | <tr><td>10/1 pLQB(seq-3)(Miniprep product)</td></tr> | ||
+ | <tr><td>10/1 pLQB(seq-4)(Miniprep product)</td></tr> | ||
+ | <tr><td>10/1 pLQB(VR)(Miniprep product)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>9/22 master Plate pLQB</td></tr> | ||
+ | <tr><td>9/22 master Plate pQ(3)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/23 pQ</td><td>30</td><td>3</td><td>0</td><td>3</td><td>1</td><td>9</td><td>44</td><td>90</td></tr> | ||
+ | <tr><td>pQ(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/2 Pcon(pSB1C3)</td><td>30</td><td>0</td><td>3</td><td>3</td><td>1</td><td>9</td><td>44</td><td>90</td></tr> | ||
+ | <tr><td>9/2 Pcon(pSB1C3)(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/29 Liquid Culture pLQB</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/29 Liquid Culture pQ(3)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/29 Liquid Culture pQ(22)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/29 Liquid Culture pQ(23)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Sequence PCR</h4> | ||
+ | <table> | ||
+ | <tr><th>Target</th><th>9/28 pL(pSB1C3)(VF)(Miniprep product)</th><th>9/28 pL(pSB1C3)(VR)(Miniprep product)</th><th>9/22 pB(22)(VF)(Miniprep product)</th><th>9/22 M pB(22)(VR)</th><th>9/22 pB(23)(VF)</th><th>9/22 pB(23)(VR)</th><th>10/1 M pQ(3)(VF)</th><th>10/1 M pQ(3)(VR)</th><th>10/1 M pLQB(VF)</th><th>10/1 M pLQB(seq-1)</th><th>10/1 M pLQB(seq-2)</th><th>10/1 M pLQB(seq-3)</th><th>10/1 M pLQB(seq-4)</th><th>10/1 M pLQB(VR)</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>4.7</td><td>4.7</td><td>1.6</td><td>1.6</td><td>3.2</td><td>3.2</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td><td>5</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td></tr> | ||
+ | <tr><td>Primer(VF)/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>3.05</td><td>3.05</td><td>6.15</td><td>6.15</td><td>4.55</td><td>4.55</td><td>2.75</td><td>2.75</td><td>2.75</td><td>2.75</td><td>2.75</td><td>2.75</td><td>2.75</td><td>2.75</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td></tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>96℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>96℃</td><td>10sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>55℃</td><td>5sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>60℃</td><td>4min</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>4℃</td><td>1min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>4℃</td><td>infinity</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <p>(1)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>blank</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>1400b ladder</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>His-OE-1</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>750b ladder</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>His-OE-2</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <p>(2)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>3,6</td><td>pQ(X,P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>100b ladder</td><td>-</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/e/e4/Kyoto-1001_Gel_Extraction_No.2.jpg"> | ||
+ | |||
+ | <p>(3)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅢ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>3,6</td><td>Pcon pSB1C3(S,P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/d/dc/Kyoto-1001_Gel_Extraction_No.3_before.jpg"> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/9/99/Kyoto-1001_Gel_Extraction_No.3_after.jpg"> | ||
+ | |||
+ | <p>(4)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅣ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>3</td><td>DiDECARB-4</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>DiDECARB-5</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>DiDECARB-4(control)</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>DiDECARB-5(control)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/5/55/Kyoto-1001_Gel_Extraction_No.4_before.jpg"> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/d/d1/Kyoto-1001_Gel_Extraction_No.4_after.jpg"> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1002" class="kyoto-jump"></a> | ||
+ | <h3>10/2</h3> | ||
+ | <h4>Miniprep</h4> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>pLQB</td><td>390</td><td>1.70</td><td>1.20</td></tr> | ||
+ | <tr><td>pLQ</td><td>319</td><td>1.64</td><td>0.92</td></tr> | ||
+ | <tr><td>j04450</td><td>255</td><td>1.59</td><td>1.04</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1003" class="kyoto-jump"></a> | ||
+ | <h3>10/3</h3> | ||
+ | <h4>PCR</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Target</th><th>Volume</th></tr> | ||
+ | <tr><td>10×buffur for KOD Plus Ver.2/(µl)</td><td>5</td></tr> | ||
+ | <tr><td>2mMdNTPs/(µl)</th><td>5</td></tr> | ||
+ | <tr><td>25mM MgSO4/(µl)</td><td>3</td></tr> | ||
+ | <tr><td>VF Primer/(µl)</td><td>1.5</td></tr> | ||
+ | <tr><td>VR Primer/(µl)</td><td>1.5</td></tr> | ||
+ | <tr><td>template/(µl)</td><td>1</td></tr> | ||
+ | <tr><td>KOD-plus/(µl)</td><td>1</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>33</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>50</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>10/3 PB</td><td>39.8</td><td>1.75</td><td>0.92</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Digestion</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoRI/(µl)</th><th>Spe1/(µl)</th><th>BSA</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>10/3 Column pB</td><td>15.8</td><td>1</td><td>1</td><td>0.2</td><td>2</td><td>-</td><td>20</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>Xba1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>DiDECARB-4</td><td>10</td><td>2</td><td>2</td><td>0.4</td><td>4</td><td>21.6</td><td>40</td></tr> | ||
+ | <tr><td>DiDECARB-4(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>DiDECARB-5</td><td>10</td><td>2</td><td>2</td><td>0.4</td><td>4</td><td>21.6</td><td>40</td></tr> | ||
+ | <tr><td>DiDECARB-5(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <p><span class="kyoto-author">Tatsui</span></p> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>pSB1C3(X,P)-4</td><td>942</td><td>1.89</td><td>1.26</td></tr> | ||
+ | <tr><td>pSB1C3(X,P)-5</td><td>518</td><td>1.87</td><td>1.26</td></tr> | ||
+ | </table> | ||
+ | <div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1004" class="kyoto-jump"></a> | ||
+ | <h3>10/4</h3> | ||
+ | <h4>Digestion</h4> | ||
+ | <p><span class="kyoto-author">Tatsui</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>Xba1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/18 MP pL-pSB1C3(85)</td><td>24</td><td>1</td><td>1</td><td>0.4</td><td>4</td><td>9.6</td><td>40</td></tr> | ||
+ | <tr><td>9/18 MP pL-pSB1C3(85)(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/18 MP Bµ-pSB1C3-11-3(355)</td><td>6</td><td>1</td><td>1</td><td>0.4</td><td>4</td><td>27.6</td><td>40</td></tr> | ||
+ | <tr><td>9/18 MP Bµ-pSB1C3-11-3(355)(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <p>(1)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>10/4 Bµ pSB1C3-11-3(control)</td><td>-</td></tr> | ||
+ | <tr><td>3,4</td><td>10/4 Bµ pSB1C3-11-3(XP)</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>ladder</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <p>(2)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>ladder</td><td>-</td></tr> | ||
+ | <tr><td>3,4</td><td>10/4 pL-pSB1C3(XP)</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>10/4 pL-pSB1C3(control)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <p><span class="kyoto-author">No name</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Vector/(µL)</th><th>Insert/(µL)</th><th>Ligase/(µl)</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>9/20 Q-pSB1C3(B)</td><td>1</td><td>3</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | <tr><td>9/16 Q-pSB1C3(B)</td><td>1</td><td>3</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | <tr><td>9/20 Q-pSB1C3(B)(control)</td><td>1</td><td>0</td><td>1</td><td>5</td><td>3</td><td>10</td></tr> | ||
+ | <tr><td>9/16Q-pSB1C3(B)(control)</td><td>1</td><td>0</td><td>1</td><td>5</td><td>3</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Plasmid/(µl)</th><th>CompetentCells(DH5α)/(µl)</th></tr> | ||
+ | <tr><td>E1</td><td>2</td><td>10</td></tr> | ||
+ | <tr><td>E2</td><td>2</td><td>10</td></tr> | ||
+ | <tr><td>E3</td><td>2</td><td>10</td></tr> | ||
+ | <tr><td>E4</td><td>2</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1005" class="kyoto-jump"></a> | ||
+ | <h3>10/5</h3> | ||
+ | <h4>Ethanol Precipitation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <p>10/3 Gel Extraction PconpSB1C3(SP)</p> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>sample</th><th>Vector/(µL)</th><th>Insert/(µL)</th><th>Toyobo Ligation high/(µl)</th></tr> | ||
+ | <tr><td>10/5 PconpSB1C3(SP)+9/20pQ(3)(XP)</td><td>1</td><td>1</td><td>2</td></tr> | ||
+ | <tr><td>10/5 PconpSB1C3(SP)(control)</td><td>1</td><td>1</td><td>2</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Plasmid/(µl)</th><th>CompetentCells(DH5α)/(µl)</th></tr> | ||
+ | <tr><td>F1</td><td>2</td><td>10</td></tr> | ||
+ | <tr><td>F2</td><td>2</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</th></tr> | ||
+ | <tr><td>9-14</td><td>E1 1-6</td></th> | ||
+ | <tr><td>15-20</td><td>E2 1-6</td></th> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>E1 1-6</td></tr> | ||
+ | <tr><td>E2 1-6</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>pB PCR</td><td>57</td><td>2.06</td><td>2.39</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Digestion</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoRI/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/18 MP Bµ(pSB1C3)11-4(ES)</td><td>10</td><td>1</td><td>0</td><td>1</td><td>0</td><td>4</td><td>0.4</td><td>23.6</td><td>40</td></tr> | ||
+ | <tr><td>9/18 MP Bµ(pSB1C3)11-4(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>0</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/22 MP pQ-3(XP)</td><td>40</td><td>0</td><td>4</td><td>0</td><td>4</td><td>16</td><td>1.6</td><td>94.4</td><td>160</td></tr> | ||
+ | <tr><td>9/22 MP pQ-3(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>0</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/22 Pcon Master(SP)</td><td>10</td><td>0</td><td>0</td><td>1</td><td>1</td><td>4</td><td>0.4</td><td>23.6</td><td>40</td></tr> | ||
+ | <tr><td>9/22 Pcon Master(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>0</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/22 pB(PCR Product)(ES)</td><td>20</td><td>1</td><td>0</td><td>1</td><td>0</td><td>4</td><td>0.4</td><td>13.6</td><td>40</td></tr> | ||
+ | <tr><td>9/22 pB(PCR Product)(control)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>10/td><td>1</td><td>0</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <p><span class="kyoto-author">No Name</span></p> | ||
+ | <table> | ||
+ | <tr><th>Target</th><th>Volume</th></tr> | ||
+ | <tr><td>2×KAPA HiFi Hotstart Ready Mix/(µl)</td><td>12.5</td></tr> | ||
+ | <tr><td>Fw Primer/(µl)</td><td>0.75</td></tr> | ||
+ | <tr><td>Rv Primer/(µl)</td><td>0.75</td></tr> | ||
+ | <tr><td>Template(9/22 Mini Pcon-mamQ-3)</td><td>pick up</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>11</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>25</td></tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>98℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>98℃</td><td>20sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>60℃</td><td>15sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>30sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>72℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>12℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1006" class="kyoto-jump"></a> | ||
+ | <h3>10/6</h3> | ||
+ | |||
+ | <h4>Sequence PCR</h4> | ||
+ | <table> | ||
+ | <tr><th>Target</th><th>10/6 T7-RBS-his(pSB1C3)-1-VF(Miniprep product)</th><th>10/6 T7-RBS-his(pSB1C3)-1-VR(Miniprep product)</th><th>10/6 T7-RBS-his(pSB1C3)-2-VF(Miniprep product)</th><th>10/6 T7-RBS-his(pSB1C3)-2-VR(Miniprep product)</th><th>10/6 T7-RBS-his(pSB1C3)-3-VF(Miniprep product)</th><th>10/6 T7-RBS-his(pSB1C3)-3-VR(Miniprep product)</th><th>10/6 Q(pSB1C3)E1-1 VF(Miniprep product)</th><th>10/6 Q(pSB1C3)E1-1 VR(Miniprep product)</th><th>10/6 M Q(pSB1C3)E1-2-VF</th><th>10/6 Q(pSB1C3)E1-2-VR(Miniprep product)</th><th>10/6 M Q(pSB1C3)E1-3-VF</th><th>10/6 M Q(pSB1C3)E1-3-VR</th><th>10/6 M Q(pSB1C3)E2-1-VF</th><th>10/6 M Q(pSB1C3)E2-1-VR</th><th>10/6 Q(pSB1C3)E2-2-VF(Miniprep product)</th><th>10/6 Q(pSB1C3)E2-2-VR(Miniprep product)</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>2.2</td><td>2.2</td><td>2.5</td><td>2.5</td><td>2.5</td><td>2.5</td><td>1.85</td><td>1.85</td><td>1.1</td><td>1.1</td><td>1.7</td><td>1.7</td><td>1.8</td><td>1.8</td><td>1.7</td><td>1.7</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td></tr> | ||
+ | <tr><td>Primer/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>5.55</td><td>5.55</td><td>5.25</td><td>5.25</td><td>5.25</td><td>5.25</td><td>5.9</td><td>5.9</td><td>6.65</td><td>6.65</td><td>6.05</td><td>6.05</td><td>5.95</td><td>5.95</td><td>6.05</td><td>6.05</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td></tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>96℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>96℃</td><td>10sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>50℃</td><td>5sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>60℃</td><td>4min</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>4℃</td><td>1min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>4℃</td><td>infinity</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>T7-RBS-his(pSB1C3)-1</td><td>180</td><td>1.84</td><td>1.76</td></tr> | ||
+ | <tr><td>T7-RBS-his(pSB1C3)-2</td><td>160</td><td>1.92</td><td>1.92</td></tr> | ||
+ | <tr><td>T7-RBS-his(pSB1C3)-3</td><td>156</td><td>1.69</td><td>1.64</td></tr> | ||
+ | <tr><td>E1-1</td><td>216</td><td>1.84</td><td>2.04</td></tr> | ||
+ | <tr><td>E1-2</td><td>355</td><td>1.82</td><td>2.31</td></tr> | ||
+ | <tr><td>E1-3</td><td>238</td><td>1.81</td><td>2.11</td></tr> | ||
+ | <tr><td>E2-1</td><td>225</td><td>1.83</td><td>2.00</td></tr> | ||
+ | <tr><td>E2-2</td><td>230</td><td>1.76</td><td>1.84</td></tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <p>(1)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>10/5 Bµ(pSB1C3)(control)</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>10/5 Bµ(pSB1C3)(ES)</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>10/5 pB(ES)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/5/5e/Kyoto-1006_Gel_Extraction_No.1_before.jpg"> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/d/df/Kyoto-1006_Gel_Extraction_No.1_after.jpg"> | ||
+ | |||
+ | <p>(2)</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>pQ-3(control)</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>pQ-3(XP)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>Pcon(control)</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>Pcon(SP)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/6/6b/Kyoto-1006_Gel_Extraction_No.2_after.jpg"> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1007" class="kyoto-jump"></a> | ||
+ | <h3>10/7</h3> | ||
+ | <h4>Liquid Culture</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>pLQB(9/22)</td></tr> | ||
+ | <tr><td>pLQ(9/22)</td></tr> | ||
+ | <tr><td>pL(9/22)</td></tr> | ||
+ | <tr><td>control(T7-RBS)(9/18)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1008" class="kyoto-jump"></a> | ||
+ | <h3>10/8</h3> | ||
+ | <h4>Ligation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>sample</th><th>Insert/(µL)</th><th>Vector/(µL)</th><th>2x Ligation high/ | ||
+ | |||
+ | (µl)</th><th>MilliQ</th><th>TOTAL</th></tr> | ||
+ | <tr><td>pQ pSB1C3</td><td>1</td><td>1</td><td>2</td><td>0</td><td>4</td></tr> | ||
+ | <tr><td>pQ pSB1C3(control)</td><td>0</td><td>1</td><td>2</td><td>1</td><td>4</td></tr> | ||
+ | <tr><td>pB pSB1C3</td><td>1</td><td>1</td><td>2</td><td>0</td><td>4</td></tr> | ||
+ | <tr><td>pB pSB1C3(control)</td><td>0</td><td>1</td><td>2</td><td>1</td><td>4</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>9/22 pLQB</td></tr> | ||
+ | <tr><td>9/22 pLQ</td></tr> | ||
+ | <tr><td>9/22 pL</td></tr> | ||
+ | <tr><td>9/18 control(T7-RBS)(9/18)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Inoculation</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>10/7 pLQB</td></tr> | ||
+ | <tr><td>10/7 pLQ</td></tr> | ||
+ | <tr><td>10/7 pL</td></tr> | ||
+ | <tr><td>10/7 control</td></tr> | ||
+ | </table> | ||
+ | <p>16:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>BL21</td><td>0.224</td></tr> | ||
+ | <tr><td>LQB</td><td>0.031</td></tr> | ||
+ | <tr><td>LQ</td><td>0.061</td></tr> | ||
+ | </table> | ||
+ | <p>17:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>BL21</td><td>0.720</td></tr> | ||
+ | <tr><td>LQB</td><td>0.057</td></tr> | ||
+ | <tr><td>LQ</td><td>0.139</td></tr> | ||
+ | </table> | ||
+ | <p>18:00</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQ</td><td>0.088</td></tr> | ||
+ | <tr><td>LQB</td><td>0.211</td></tr> | ||
+ | </table> | ||
+ | <p>18:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQ</td><td>0.267</td></tr> | ||
+ | <tr><td>LQB</td><td>0.122</td></tr> | ||
+ | </table> | ||
+ | <p>19:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.216</td></tr> | ||
+ | <tr><td>LQ</td><td>0.412</td></tr> | ||
+ | </table> | ||
+ | <p>10/9 13:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB(morning)</td><td>1.657</td></tr> | ||
+ | <tr><td>LQ</td><td>1.625</td></tr> | ||
+ | <tr><td>LQB(evening)</td><td>1.014</td></tr> | ||
+ | <tr><td>-</td><td>0.064</td></tr> | ||
+ | <tr><td>LQ</td><td>1.652</td></tr> | ||
+ | <tr><td>L</td><td>2.117</td></tr> | ||
+ | <tr><td>control</td><td>2.124</td></tr> | ||
+ | </table> | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1009" class="kyoto-jump"></a> | ||
+ | <h3>10/9</h3> | ||
+ | <h4>Colony PCR</h4> | ||
+ | <table> | ||
+ | <tr><th>Target</th><th>Volume</th></tr> | ||
+ | <tr><td>2x quick tag/(µl)</td><td>15</td></tr> | ||
+ | <tr><td>VF Primer/(µl)</td><td>0.6</td></tr> | ||
+ | <tr><td>VR Primer/(µl)</td><td>0.6</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>13.8</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>30</td></tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>94℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>94℃</td><td>30sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>55℃</td><td>30sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>68℃</td><td>1min</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>68℃</td><td>7min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>4℃</td><td>infinity</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Plasmid/(µl)</th><th>CompetentCells(DH5α)/(µl)</th><th>TOTAL/(µl)</th></tr> | ||
+ | <tr><td>pQ</td><td>2</td><td>20</td><td>22</td></tr> | ||
+ | <tr><td>pB</td><td>2</td><td>20</td><td>22</td></tr> | ||
+ | <tr><td>pQ(control)</td><td>2</td><td>20</td><td>22</td></tr> | ||
+ | <tr><td>pB(control)</td><td>2</td><td>20</td><td>22</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Inoculation</h4> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>10/8 pLQB</td></tr> | ||
+ | <tr><td>10/8 pLQ</td></tr> | ||
+ | <tr><td>10/8 pL</td></tr> | ||
+ | <tr><td>10/8 control</td></tr> | ||
+ | </table> | ||
+ | <p>14:00</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.177</td></tr> | ||
+ | <tr><td>LQ</td><td>0.306</td></tr> | ||
+ | <tr><td>L</td><td>0.477</td></tr> | ||
+ | <tr><td>control</td><td>0.435</td></tr> | ||
+ | </table> | ||
+ | <p>14:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.240</td></tr> | ||
+ | <tr><td>LQ</td><td>0.351</td></tr> | ||
+ | <tr><td>L</td><td>0.641</td></tr> | ||
+ | <tr><td>control</td><td>0.640</td></tr> | ||
+ | </table> | ||
+ | <p>15:00</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.351</td></tr> | ||
+ | <tr><td>LQ</td><td>0.395</td></tr> | ||
+ | </table> | ||
+ | <p>15:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.413</td></tr> | ||
+ | <tr><td>LQ</td><td>0.397</td></tr> | ||
+ | </table> | ||
+ | <p>16:00</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.564</td></tr> | ||
+ | <tr><td>LQ</td><td>0.458</td></tr> | ||
+ | </table> | ||
+ | <p>16:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.732</td></tr> | ||
+ | <tr><td>LQ</td><td>0.518</td></tr> | ||
+ | </table> | ||
+ | <p>17:00</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQ</td><td>0.581</td></tr> | ||
+ | </table> | ||
+ | <p>17:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQ</td><td>0.458</td></tr> | ||
+ | </table> | ||
+ | <p>18:00</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQ</td><td>0.749</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1010" class="kyoto-jump"></a> | ||
+ | <h3>10/10</h3> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <p>Honda</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>PCR Product</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>2</td><td>10/9 pB(pSB1C3) Colony_1</td></tr> | ||
+ | <tr><td>3</td><td>10/9 Negative Control</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/0/0f/1010electrophoresis1.jpg"> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffur/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/15 pLQ</td><td>5</td><td>0.5</td><td>0</td><td>0</td><td>0.5</td><td>2(H)</td><td>0.5</td><td>11.5</td><td>20</td></tr> | ||
+ | <tr><td>10/2 pLQB</td><td>7</td><td>1</td><td>0</td><td>0</td><td>1</td><td>4(H)</td><td>0.5</td><td>26.5</td><td>40</td></tr> | ||
+ | <tr><td>10/2 pLQB(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(H)</td><td>0</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/2 pSB4A5</td><td>10</td><td>1</td><td>0</td><td>0</td><td>1</td><td>4(H)</td><td>0.5</td><td>26.5</td><td>40</td></tr> | ||
+ | <tr><td>9/2 pSB4A5(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(H)</td><td>0</td><td>8</td><td>10</td></tr> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>20:00~ O/N</p> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>10/6 Transformation Pcon+mamB+pSB1C3 Colony_1</td><td>LB medium(CP)*2</td></tr> | ||
+ | <tr><td>9/22 Master Plate Pcon+mamL+mamQ</td><td>LB medium(CP)*2</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>10/10 Liquid culture Pcon+mamB colony_1 </td><td>74</td><td>1.70</td><td>3.82</td></tr> | ||
+ | <tr><td>10/10 Liquid culture Pcon+mamL+mamQ </td><td>59</td><td>1.88</td><td>5.10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>2</td><td>10/10 Pcon+mamL+mamQ+mamB (Nega)</td><td>5</td></tr> | ||
+ | <tr><td>4</td><td>10/10 Pcon+mamL+mamQ+mamB (E+P)</td><td>35</td></tr> | ||
+ | <tr><td>7</td><td>10/10 Pcon+mamL+mamQ (E+P)</td><td>20</td></tr> | ||
+ | <tr><td>10</td><td>10/10 pSB4A5 (Nega)</td><td>5</td></tr> | ||
+ | <tr><td>12</td><td>10/10 pSB4A5 (E+P)</td><td>35</td></tr> | ||
+ | <tr><td>14</td><td>1kb ladder </td><td>3</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/8/84/1011gelextraction1before.jpg"> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/0/0c/1011gelextraction1after.jpg"> | ||
+ | |||
+ | <div> | ||
+ | <a name="1013" class="kyoto-jump"></a> | ||
+ | <h3>10/13</h3> | ||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffur/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>CIAP/(µl)</tr><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>10/11 Miniprep Pcon+mamL+mamQ</td><td>23</td><td>1</td><td>0</td><td>0</td><td>1</td><td>4(H)</td><td>0.5</td><td>11.5</td><td>1</td><td>41</td></tr> | ||
+ | <tr><td>10/11 Miniprep Pcon+mamL+mamQ(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(H)</td><td>0</td><td>8</td><td>0</td><td>10</td></tr> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <p>11:00~ 2hours</p> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>10/13 Digestion Pcon+mamL+mamQ(E+P)</td><td>59</td><td>1.79</td><td>-0.66</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>2*Ligation high/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>10/13 Pcon+mamL+mamQ (E+P)</td><td>2</td><td>10/11 pSB4A5 (E+P)(2 fold dilution)</td><td>2</td><td>4</td><td>8</td></tr> | ||
+ | <tr><td>10/11 Pcon+mamL+mamQ+mamB(E+P)</td><td>2</td><td>10/11 pSB4A5 (E+P)(2 fold dilution)</td><td>2</td><td>4</td><td>8</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>10/10 Ligation Pcon+mamL+mamQ+pSB4A5</td><td>6</td><td>30(2/23)</td><td>36</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>10/10 Ligation Pcon+mamL+mamQ+mamB+pSB4A5</td><td>6</td><td>30(2/23)</td><td>36</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1014" class="kyoto-jump"></a> | ||
+ | <h3>10/14</h3> | ||
+ | <h4>Liquid Culture</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>9/22 Master Plate Pcon+mamL+mamQ+mamB </td><td>LB medium(CP)</td></tr> | ||
+ | <tr><td>9/22 Master Plate Pcon+mamL+mamQ </td><td>LB medium(CP)</td></tr> | ||
+ | <tr><td>9/22 Master Plate Pcon+mamL </td><td>LB medium(CP)</td></tr> | ||
+ | <tr><td>10/6 Transformation Pcon+ mamB </td><td>LB medium(CP)</td></tr> | ||
+ | <tr><td>10/9 Transformation Pcon+ mamB </td><td>LB medium(CP)</td></tr> | ||
+ | <tr><td>10/4 Transformation mamQ+pSB1C3 (E1-3) </td><td>LB medium(CP)</td></tr> | ||
+ | <tr><td>9/18 Master Plate T7+RBS+pSB1C3</td><td>LB medium(CP)</td></tr> | ||
+ | <tr><td>10/13 Master Plate Pcon+mamL+mamQ+pSB4A5</td><td>LB medium(Amp)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <div> | ||
+ | <a name="1015" class="kyoto-jump"></a> | ||
+ | <h3>10/15</h3> | ||
+ | <h4>Inoculation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <p>10:45~</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>10/14 pLQB</td></tr> | ||
+ | <tr><td>10/14 pLQ</td></tr> | ||
+ | <tr><td>10/14 pL</td></tr> | ||
+ | <tr><td>10/14 T7-RBS</td></tr> | ||
+ | <tr><td>10/14 pLQ(4A5)</td></tr> | ||
+ | </table> | ||
+ | <p>12:30</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.096</td></tr> | ||
+ | <tr><td>LQ</td><td>0.087</td></tr> | ||
+ | <tr><td>L</td><td>0.278</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>0.253</td></tr> | ||
+ | </table> | ||
+ | <p>13:05</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.153</td></tr> | ||
+ | <tr><td>LQ</td><td>0.139</td></tr> | ||
+ | <tr><td>L</td><td>0.448</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>0.389</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>0.277</td></tr> | ||
+ | </table> | ||
+ | <p>13:46</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.275</td></tr> | ||
+ | <tr><td>LQ</td><td>0.204</td></tr> | ||
+ | <tr><td>L</td><td>0.597</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>0.516</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>0.443</td></tr> | ||
+ | </table> | ||
+ | <p>14:26</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.293</td></tr> | ||
+ | <tr><td>LQ</td><td>0.275</td></tr> | ||
+ | <tr><td>L</td><td>0.896</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>0.595</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>0.641</td></tr> | ||
+ | </table> | ||
+ | <p>14:55</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.435</td></tr> | ||
+ | <tr><td>LQ</td><td>0.434</td></tr> | ||
+ | <tr><td>L</td><td>0.914</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>0.837</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>0.863</td></tr> | ||
+ | </table> | ||
+ | <p>15:43</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>0.871</td></tr> | ||
+ | <tr><td>LQ</td><td>0.826</td></tr> | ||
+ | <tr><td>L</td><td>1.735</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>1.692</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>1.458</td></tr> | ||
+ | </table> | ||
+ | <p>16:33</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>1.112</td></tr> | ||
+ | <tr><td>LQ</td><td>1.046</td></tr> | ||
+ | <tr><td>L</td><td>0.747</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>1.819</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>1.642</td></tr> | ||
+ | </table> | ||
+ | <p>17:15</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>1.725</td></tr> | ||
+ | <tr><td>LQ</td><td>1.613</td></tr> | ||
+ | <tr><td>L</td><td>2.188</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>2.123</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>2.007</td></tr> | ||
+ | </table> | ||
+ | <p>18:20</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>1.833</td></tr> | ||
+ | <tr><td>LQ</td><td>1.712</td></tr> | ||
+ | <tr><td>L</td><td>2.194</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>2.205</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>2.127</td></tr> | ||
+ | </table> | ||
+ | <p>18:45</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>LQB</td><td>1.928</td></tr> | ||
+ | <tr><td>LQ</td><td>1.808</td></tr> | ||
+ | <tr><td>L</td><td>2.224</td></tr> | ||
+ | <tr><td>T7-RBS</td><td>2.233</td></tr> | ||
+ | <tr><td>pLQ(4A5)</td><td>2.148</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <p><span class="kyoto-author">Honda </span></p> | ||
+ | <table> | ||
+ | <tr><th>NameⅠ</th><th>NameⅡ</th></tr> | ||
+ | <tr><td>10/6 Pcon+mamB+pSB1C3 colony_1</td><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_1(seq-2+VR)</td></tr> | ||
+ | <tr><td>10/9 Pcon+mamB+pSB1C3 colony_1</td><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_2(seq-2+VR)</td></tr> | ||
+ | <tr><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_1</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1(seq-2+VR)</td></tr> | ||
+ | <tr><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_2</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2(seq-2+VR)</td></tr> | ||
+ | <tr><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3(seq-2+VR)</td></tr> | ||
+ | <tr><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4(seq-2+VR)</td></tr> | ||
+ | <tr><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3</td><td>-</td></tr> | ||
+ | <tr><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <div> | ||
+ | <a name="1016" class="kyoto-jump"></a> | ||
+ | <h3>10/16</h3> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>Colony PCR Products</td></tr> | ||
+ | <tr><td>6</td><td>1kbp ladder </td></tr> | ||
+ | <tr><td>7</td><td>10/6 Pcon+mamB+pSB1C3 colony_1</td></tr> | ||
+ | <tr><td>8</td><td>10/6 Pcon+mamB+pSB1C3 colony_2</td></tr> | ||
+ | <tr><td>9</td><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_1</td></tr> | ||
+ | <tr><td>10</td><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_2</td></tr> | ||
+ | <tr><td>11</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1</td></tr> | ||
+ | <tr><td>12</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2</td></tr> | ||
+ | <tr><td>13</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3</td></tr> | ||
+ | <tr><td>14</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4</td></tr> | ||
+ | <tr><td>15</td><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_1(seq-2+VR)</td></tr> | ||
+ | <tr><td>16</td><td>10/13 Pcon+mamL+mamQ+pSB4A5 colony_2(seq-2+VR)</td></tr> | ||
+ | <tr><td>17</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1(seq-2+VR)</td></tr> | ||
+ | <tr><td>18</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2(seq-2+VR)</td></tr> | ||
+ | <tr><td>19</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3(seq-2+VR)</td></tr> | ||
+ | <tr><td>20</td><td>10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4(seq-2+VR)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <img src="https://static.igem.org/mediawiki/2014/8/83/1016electrophoresis1.jpg"> | ||
+ | |||
+ | <h4>Inoculation</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <p>15:15~</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th></tr> | ||
+ | <tr><td>10/15 RFP-his</td></tr> | ||
+ | </table> | ||
+ | <p>17:15</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>RFP-his</td><th>0.354</th></tr> | ||
+ | </table> | ||
+ | <p>18:50</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><th>RFP-his </th><th>0.908 </th></tr> | ||
+ | </table> | ||
+ | <p>19:20</p> | ||
+ | <table> | ||
+ | <tr><th>Sample</th><th>Absorbance</th></tr> | ||
+ | <tr><td>RFP-his </td><td>0.992</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="1017" class="kyoto-jump"></a> | ||
+ | <h3>10/17</h3> | ||
+ | <h4>Western Blotting</h4> | ||
+ | <p><span class="kyoto-author">Honda</span></p> | ||
+ | <p>Make the 20% acrilamid gel apray the following</p> | ||
+ | <table> | ||
+ | <tr><th>Lane</th><th>Sample</th><th> Volume/(µl)</th></tr> | ||
+ | <tr><td>2</td><td>Sample buffer</td><th>5</th></tr> | ||
+ | <tr><td>3</td><td>protein marker</td><th>5</th></tr> | ||
+ | <tr><td>4</td><td>10/14 Pcon+mamL+mamQ+mamB+pSB1C3</td><th>5</th></tr> | ||
+ | <tr><td>5</td><td>10/14 Pcon+mamL+mamQ+pSB1C3</td><th>5</th></tr> | ||
+ | <tr><td>6</td><td>10/14 Pcon+mamB+pSB1C3</td><th>5</th></tr> | ||
+ | <tr><td>7</td><td>10/14 Pcon+mamL+pSB1C3</td><th>5</th></tr> | ||
+ | <tr><td>9</td><td>10/14 T7+RBS+pSB1C3(Nega)</td><th>5</th></tr> | ||
+ | <tr><td>10</td><td>GFP-his(protein)(10 fold dilution)</td><th>5</th></tr> | ||
+ | <tr><td>11</td><td>GFP-his(protein)(10 fold dilution)(37°C denature for 10 min.)</td><th>5</th></tr> | ||
+ | </table> | ||
+ | <p>Electrophoresis:200V 25mA 90min</p> | ||
+ | <p>Transcription:50V 200mA 73min</p> | ||
+ | |||
</div> | </div> | ||
</html> | </html> |
Latest revision as of 03:52, 18 October 2014
7/15
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J23101(Pcon) | 2 | 20(2/23) | 22 | LB(CP) |
BBa_B0032(RBS) | 2 | 20(2/23) | 22 | LB(CP) |
7/16
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_B0030(1) | 2 | 20(2/23) | 22 | LB(CP) |
BBa_B0030(2) | 2 | 20(bought) | 22 | LB(CP) |
BBa_B0032(1) | 2 | 20(2/23) | 22 | LB(CP) |
BBa_B0032(2) | 2 | 20(bought) | 22 | LB(CP) |
7/17
Colony PCR
NameⅠ | NameⅡ |
---|---|
7/16 BBa_B0030(1) Colony_1 | 7/16 BBa_B0032(1) Colony_1 |
7/16 BBa_B0030(1) Colony_2 | 7/16 BBa_B0032(1) Colony_2 |
7/16 BBa_B0030(1) Colony_3 | 7/16 BBa_B0032(1) Colony_3 |
7/16 BBa_B0030(2) Colony_1 | 7/16 BBa_B0032(2) Colony_1 |
7/16 BBa_B0030(2) Colony_2 | 7/16 BBa_B0032(2) Colony_2 |
7/16 BBa_B0030(2) Colony_3 | 7/16 BBa_B0032(2) Colony_3 |
Negative Control | - |
- | - |
Liquid Culture
Name | medium |
---|---|
7/16 BBa_B0030(1) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0030(1) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0030(1) Colony_3 | Plusgrow medium(CP) |
7/16 BBa_B0030(2) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0030(2) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0030(2) Colony_3 | Plusgrow medium(CP) |
7/16 BBa_B0032(1) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0032(1) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0032(1) Colony_3 | Plusgrow medium(CP) |
7/16 BBa_B0032(2) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0032(2) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0032(2) Colony_3 | Plusgrow medium(CP) |
7/18
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
7/16 BBa_B0030(1) Colony_1 | 229 | 1.96 | 1.40 |
7/16 BBa_B0030(1) Colony_2 | 209 | 1.95 | 1.50 |
7/16 BBa_B0030(1) Colony_3 | 108 | 2.12 | 2.12 |
7/16 BBa_B0030(2) Colony_1 | - | - | - |
7/16 BBa_B0030(2) Colony_2 | 174 | 2.02 | 1.56 |
7/16 BBa_B0030(2) Colony_3 | 158 | 2.01 | 1.68 |
7/16 BBa_B0032(1) Colony_1 | 179 | 2.00 | 2.06 |
7/16 BBa_B0032(1) Colony_2 | - | - | - |
7/16 BBa_B0032(1) Colony_3 | 221 | 1.90 | 1.37 |
7/16 BBa_B0032(2) Colony_1 | 225 | 1.89 | 1.37 |
7/16 BBa_B0032(2) Colony_2 | 270 | 1.98 | 1.63 |
7/16 BBa_B0032(2) Colony_3 | 194 | 1.89 | 1.33 |
7/30
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffur/(µl) | BSA/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
7/16 BBa_B0030(2) Colony_1 | 1 | 0.3 | 0 | 0 | 0 | 1(H) | 0 | 7.7 | 10 |
7/16 BBa_B0030(2) Colony_1 | 1 | 0 | 0.3 | 0 | 0 | 1(M) | 1 | 6.7 | 10 |
7/16 BBa_B0030(2) Colony_1 | 1 | 0 | 0 | 0.3 | 0 | 1(M) | 0 | 7.7 | 10 |
7/16 BBa_B0030(2) Colony_1 | 1 | 0 | 0 | 0 | 0.3 | 1(H) | 0 | 7.7 | 10 |
7/16 BBa_B0030(2) Colony_1(Nega) | 1 | 0 | 0 | 0 | 0 | 1(M) | 0 | 8 | 10 |
Electrophoresis
Lane | Restriction Enzyme Digestion Products |
---|---|
1 | 7/30 BBa_B0030(2) Colony_1(E CUT) |
2 | 7/30 BBa_B0030(2) Colony_1(X CUT) |
3 | 7/30 BBa_B0030(2) Colony_1(S CUT) |
4 | 7/30 BBa_B0030(2) Colony_1(P CUT) |
5 | 7/30 BBa_B0030(2) Colony_1(Nega) |
6 | 1kbp ladder |
7/31
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_E0240(RBS-GFP-DT) | 2 | 20 | 22 | LB(CP) |
J23100(Pcon) | 2 | 20 | 22 | LB(AMP) |
Liquid Culture
Name | medium |
---|---|
7/31 J23100(Pcon) Colony_1 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_2 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_3 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_4 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_5 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_6 | Plusgrow medium(AMP) |
Restriction Enzyme Digestion
7/18 RBS Sample | DNA/(µl) | EcoR1/(µl) | Spe1/(µl) | Pst1/(µl) | Xba1/(µl) | Buffur/(µl) | BSA/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
BBa_B0032 | 5 | 0.3 | 0 | 0 | 0 | 1(H) | 0 | 3.7 | 10 |
BBa_B0032 | 5 | 0 | 0.3 | 0 | 0 | 1(M) | 0 | 3.7 | 10 |
BBa_B0032 | 5 | 0 | 0 | 0.3 | 0 | 1(H) | 0 | 3.7 | 10 |
BBa_B0032 | 5 | 0 | 0 | 0 | 0.3 | 1(M) | 1 | 2.7 | 10 |
BBa_B0032(Nega) | 5 | 0 | 0 | 0 | 0 | 1(M) | 0 | 4 | 10 |
8/1
Electrophoresis
Lane | Restriction Enzyme Digestion Products |
---|---|
1 | 1kb ladder |
2 | 7/31 BBa_B0032(E CUT) |
3 | 7/31 BBa_B0032(S CUT)Error |
4 | - |
5 | - |
6 | 7/31 BBa_B0032(P CUT) |
7 | 7/31 BBa_B0032(X CUT) |
8 | 7/31 BBa_B0032(Nega) |
PCR
BBa_E0240(RBS-GFP-DT) | Volume |
---|---|
10×buffur/(µl) | 5 |
2mMdNTPs/(µl) | 5 |
25mM MgSO4/(µl) | 2 |
VF Primer/(µl) | 1.5 |
VR Primer/(µl) | 1.5 |
template/(µl) | 0.5 |
KOD-plus/(µl) | 1 |
MilliQ/(µl) | 33.5 |
TOTAL/(µl) | 50 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 94℃ | 2min | 1time |
Denature | 94℃ | 15sec | 30cycle |
Annealing | 55℃ | 30sec | 30cycle |
Extension | 68℃ | 1min | 30cycle |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Product | 80 | 1.91 | 1.78 |
8/2
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
7/31 J23100(Pcon) Colony_1 | 145 | 2.11 | 3.09 |
7/31 J23100(Pcon) Colony_2 | - | - | - |
7/31 J23100(Pcon) Colony_3 | 160 | 2.01 | 3.13 |
7/31 J23100(Pcon) Colony_4 | 140 | 1.87 | 2.70 |
7/31 J23100(Pcon) Colony_5 | 105 | 2.39 | 5.90 |
7/31 J23100(Pcon) Colony_6 | 180 | 1.90 | 1.37 |
8/20
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
7/31 BBa_E0240(RBS-GFD-DT) | 2 | 20 | 22 | LB(CP) |
BBa_I732095 | 2 | 20 | 22 | LB(CP) |
8/21
Colony PCR
NameⅠ |
---|
8/20 BBa_I732095 Colony_1 |
8/20 BBa_I732095 Colony_2 |
8/20 BBa_I732095 Colony_3 |
Negative control |
Electrophoresis
Lane | PCR Product |
---|---|
1 | 1kb ladder |
2 | 8/21 BBa_I732095 Colony_1 |
3 | 8/21 BBa_I732095 Colony_2 |
4 | 8/21 BBa_I732095 Colony_3 |
5 | Negative Control |
Liquid Culture
Name | medium |
---|---|
8/20 BBa_I732095 Colony_1 | Plusgrow medium(CP) |
8/20 BBa_I732095 Colony_2 | Plusgrow medium(CP) |
8/20 BBa_I732095 Colony_3 | Plusgrow medium(CP) |
8/22
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/20 BBa_I732095 Colony_1 | 430 | 1.68 | 2.13 |
8/20 BBa_I732095 Colony_2 | 255 | 1.87 | 1.81 |
8/20 BBa_I732095 Colony_3 | 215 | 1.78 | 1.35 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Spe1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
8/22 BBa_I732095 Colony_1 | 4.7 | 1 | 1 | 3(H) | 20.3 | 30 |
8/22 BBa_I732095 Colony_2 | 7.8 | 1 | 1 | 3(H) | 17.2 | 30 |
8/22 BBa_I732095 Colony_3 | 9.3 | 1 | 1 | 3(H) | 15.7 | 30 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB3C5) | 2 | 20 | 22 | LB(CP) |
8/25
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB2K3) | 2 | 20 | 22 | LB(KAN) |
BBa_C0051(pSB1A2) | 2 | 20 | 22 | LB(AMP) |
Liquid Culture
Name | medium |
---|---|
8/22 BBa_J04450(pSB3C5) | Plusgrow medium(CP)*5 |
8/26
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/25 BBa_J04450(pSB3C5) | 575 | 1.37 | 1.37 |
Liquid Culture
Name | medium |
---|---|
8/25 BBa_J04450(pSB2K3) | Plusgrow medium(KAN)*5 |
8/25 BBa_J0051(pSB1A2) | Plusgrow medium(AMP)*2 |
8/27
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/26 BBa_J04450(pSB2K3) | 1045 | 1.43 | 1.11 |
8/26 BBa_J0051(pSB1A2) | 790 | 1.39 | 0.90 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB3T5) | 2 | 20 | 22 | LB(TET) |
8/29
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/28 BBa_J04450(pSB3T5) | 180 | 1.60 | 1.67 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB4A5) | 2 | 20 | 22 | LB(AMP) |
9/1
Colony PCR
NameⅠ |
---|
- |
- |
- |
9/1 pSB4A5 Colony_1 |
9/1 pSB4A5 Colony_2 |
Negative Control |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Pst1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
8/28 Miniprep pSB3T5 | 25 | 2 | 2 | 6(H) | 25 | 60 |
Negative control_1 | 3.7 | 0 | 0 | 1(H) | 5.3 | 10 |
8/22 Miniprep I732095 | 14 | 3 | 3 | 9(H) | 61 | 90 |
Negative control_2 | 1.5 | 0 | 0 | 1(H) | 7.5 | 10 |
8/27 Miniprep pSB2K3 | 6 | 3 | 3 | 9(H) | 69 | 90 |
Negative control_3 | 1 | 0 | 0 | 1(H) | 8 | 10 |
8/2 Miniprep Pcon Colony_3 | 20 | 1.5 | 1.5 | 5(H) | 17 | 45 |
Negative control_4 | 4 | 0 | 0 | 1(H) | 5 | 10 |
8/2 Miniprep Pcon Colony_1 | 20 | 1.5 | 1.5 | 5(H) | 17 | 45 |
Negative control_5 | 4 | 0 | 0 | 1(H) | 5 | 10 |
Liquid Culture
Name | medium |
---|---|
8/29 BBa_J04450(pSB4A5) Colony_1 | Plusgrow medium(AMP)*2 |
8/1 Pcon Colony_1 | Plusgrow medium(AMP)*2 |
8/27 pSB3T5 Colony_1 | Plusgrow medium(TET)*2 |
9/2
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/29 BBa_J04450(pSB4A5) Colony_1 | 210 | 1.61 | 1.18 |
8/1 Pcon Colony_1 | 215 | 1.79 | 1.87 |
8/27 pSB3T5 Colony_1 | 215 | 1.58 | 0.92 |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 9/1 pSB3T5 Colony_1 (Nega) | 10 |
2 | 9/1 pSB3T5 Colony_1 (E+P)(Confirmation) | 5 |
3 | 9/1 pSB3T5 Colony_1 (E+P)(Extraction) | 55 |
4 | 1kb ladder | 3 |
5 | 9/1 I732095 (Nega) | 10 |
6 | 9/1 I732095 (E+P)(Confirmation) | 5 |
7 | 9/1 I732095 (E+P)(Extraction) | 85 |
8 | 1kb ladder | 3 |
9 | 9/1 pSB2K3 (Nega) | 10 |
10 | 9/1 pSB2K3 (E+P)(Confirmation) | 5 |
11 | 9/1 pSB2K3 (E+P)(Extraction) | 85 |
Lane | Sample | Volume/(µl) |
---|---|---|
1 | 9/1 Pcon Colony_3 (E+P)(Confirmation) | 5 |
2 | 9/1 Pcon Colony_3 (E+P)(Extraction) | 20 |
3 | 9/1 Pcon Colony_3 (E+P)(Extraction) | 20 |
4 | 9/1 Pcon Colony_3 (Nega) | 10 |
5 | 1kb ladder | 3 |
6 | 9/1 Pcon Colony_1 (E+P)(Confirmation) | 5 |
7 | 9/1 Pcon Colony_1 (E+P)(Extraction) | 20 |
8 | 9/1 Pcon Colony_1 (E+P)(Extraction) | 20 |
9 | 9/1 Pcon Colony_1 (Nega) | 10 |
9/3
Concentration Measurement
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
pSB2K3 | 40 | 1.48 | 0.10 |
Pcon Colony_1 | 30 | 1.76 | 0.62 |
pSB3T5 | 50 | 2.35 | 0.50 |
pSB1C3 | 65 | 2.14 | 0.10 |
Pcon Colony_3 | 45 | 1.56 | 0.58 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
Pcon | 2.1 | pSB1C3 | 1.5 | 1 | 5 | 0.4 | 10 |
-(Negative Control) | 0 | pSB1C3 | 1.5 | 1 | 5 | 2.5 | 10 |
Pcon | 1.3 | pSB2K3 | 2.5 | 1 | 5 | 0.2 | 10 |
-(Negative Control) | 0 | pSB2K3 | 2.5 | 1 | 5 | 1.5 | 10 |
Pcon | 10 | pSB3T5 | 2.3 | 1 | 5 | 0.7 | 10 |
-(Negative Control) | 0 | pSB3T5 | 2.3 | 1 | 5 | 1.7 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/3 Ligation Pcon+pSB1C3 | 3 | 15 | 18 | LB(CP) |
9/3 Ligation pSB1C3(Negative Control) | 8 | 10 | 18 | LB(CP) |
9/3 Ligation Pcon+pSB2K3 | 3 | 15 | 18 | LB(KAN) |
9/3 Ligation pSB2K3(Negative Control) | 8 | 10 | 18 | LB(KAN) |
9/3 Ligation Pcon+pSB3T5 | 3 | 15 | 18 | LB(TET) |
9/3 Ligation pSB3T5(Negative Control) | 2 | 10 | 12 | LB(TET) |
9/4
Colony PCR
NameⅠ | NameⅡ | NameⅢ | NameⅣ |
---|---|---|---|
- | 9/3 pSB1C3(Nega) Colony_7 | 9/3 Pcon+pSB3T5 Colony_5 | 9/3 Pcon+pSB2K3 Colony_1 |
- | 9/3 pSB1C3(Nega) Colony_8 | 9/3 Pcon+pSB3T5 Colony_6 | 9/3 Pcon+pSB2K3 Colony_2 |
9/3 pSB1C3(Nega) Colony_1 | 9/3 Pcon+pSB3T5 Colony_1 | 9/3 Pcon+pSB3T5 Colony_7 | 9/3 Pcon+pSB2K3 Colony_3 |
9/3 pSB1C3(Nega) Colony_2 | 9/3 Pcon+pSB3T5 Colony_2 | 9/3 Pcon+pSB3T5 Colony_8 | 9/3 Pcon+pSB2K3 Colony_4 |
9/3 pSB1C3(Nega) Colony_3 | 9/3 Pcon+pSB3T5 Colony_3 | 9/3 Pcon+pSB3T5 Colony_9 | 9/3 Pcon+pSB2K3 Colony_5 |
9/3 pSB1C3(Nega) Colony_4 | 9/3 Pcon+pSB3T5 Colony_4 | 9/3 Pcon+pSB3T5 Colony_10 | 9/3 Pcon+pSB2K3 Colony_6 |
9/3 pSB1C3(Nega) Colony_5 | 9/3 pSB1C3(Nega) Colony_9 | 9/3 pSB3T5(Nega) Colony_1 | 9/3 Pcon+pSB2K3 Colony_7 |
9/3 pSB1C3(Nega) Colony_6 | 9/3 pSB1C3(Nega) Colony_10 | 9/3 pSB3T5(Nega) Colony_2 | 9/3 Pcon+pSB2K3 Colony_8 |
NameⅤ | NameⅥ | NameⅦ | NameⅧ |
---|---|---|---|
9/3 Pcon+pSB2K3 Colony_9 | 9/3 Pcon+pSB1C3 Colony_2 | 9/3 Pcon+pSB1C3 Colony_10 | 9/3 pSB1C3(Nega) Colony_8 |
9/3 Pcon+pSB2K3 Colony_10 | 9/3 Pcon+pSB1C3 Colony_3 | 9/3 pSB1C3(Nega) Colony_1 | 9/3 pSB1C3(Nega) Colony_9 |
9/3 pSB2K3(Nega) Colony_1 | 9/3 Pcon+pSB1C3 Colony_4 | 9/3 pSB1C3(Nega) Colony_2 | 9/3 pSB1C3(Nega) Colony_10 |
9/3 pSB2K3(Nega) Colony_2 | 9/3 Pcon+pSB1C3 Colony_5 | 9/3 pSB1C3(Nega) Colony_3 | 9/3 pSB1C3(Nega) Colony_11 |
9/3 pSB2K3(Nega) Colony_3 | 9/3 Pcon+pSB1C3 Colony_6 | 9/3 pSB1C3(Nega) Colony_4 | - |
9/3 pSB2K3(Nega) Colony_4 | 9/3 Pcon+pSB1C3 Colony_7 | 9/3 pSB1C3(Nega) Colony_5 | - |
9/3 pSB2K3(Nega) Colony_5 | 9/3 Pcon+pSB1C3 Colony_8 | 9/3 pSB1C3(Nega) Colony_6 | - |
9/3 Pcon+pSB1C3 Colony_1 | 9/3 Pcon+pSB1C3 Colony_9 | 9/3 pSB1C3(Nega) Colony_7 | - |
NameⅨ | NameⅩ |
---|---|
9/3 Pcon+pSB1C3 Colony_11 | 8/22 Miniprep I732095 Colony_3 |
Negative Control | - |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Pst1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
8/27 Miniprep pSB2K3 | 2 | 1 | 1 | 3(H) | 23 | 30 |
8/27 Miniprep pSB2K3(Nega) | 1 | 0 | 0 | 1(H) | 8 | 10 |
9/2 Miniprep pSB3T5 | 10 | 1 | 1 | 3(H) | 15 | 30 |
9/2 Miniprep pSB3T5(Nega) | 3 | 0 | 0 | 1(H) | 6 | 10 |
9/2 Miniprep pSB4A5 | 10 | 1 | 1 | 3(H) | 15 | 30 |
9/2 Miniprep pSB4A5(Nega) | 3 | 0 | 0 | 1(H) | 6 | 10 |
8/22 Miniprep pSB1C3 Colony_2 | 2 | 1 | 1 | 1(H) | 5 | 10 |
9/5
Electrophoresis
Lane | Colony PCR ProductsⅠ | Lane | Colony PCR ProductsⅠ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 pSB1C3(Nega) Colony_7 |
2 | - | 11 | 9/4 pSB1C3(Nega) Colony_8 |
3 | - | 12 | 9/4 pSB1C3(Nega) Colony_9 |
4 | 9/4 pSB1C3(Nega) Colony_1 | 13 | 9/4 pSB1C3(Nega) Colony_10 |
5 | 9/4 pSB1C3(Nega) Colony_2 | 14 | 9/4 Pcon+pSB2K3 Colony_1 |
6 | 9/4 pSB1C3(Nega) Colony_3 | 15 | 9/4 Pcon+pSB2K3 Colony_2 |
7 | 9/4 pSB1C3(Nega) Colony_4 | 16 | 9/4 Pcon+pSB2K3 Colony_3 |
8 | 9/4 pSB1C3(Nega) Colony_5 | 17 | 1kb ladder |
9 | 9/4 pSB1C3(Nega) Colony_6 |
Lane | Colony PCR ProductsⅡ | Lane | Colony PCR ProductsⅡ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 pSB3T5(Nega) Colony_2 |
2 | 9/4 Pcon+pSB2K3 Colony_4 | 11 | 9/4 Pcon+pSB2K3 Colony_1 |
3 | 9/4 Pcon+pSB2K3 Colony_5 | 12 | 9/4 Pcon+pSB2K3 Colony_2 |
4 | 9/4 Pcon+pSB2K3 Colony_6 | 13 | 9/4 Pcon+pSB2K3 Colony_3 |
5 | 9/4 Pcon+pSB2K3 Colony_7 | 14 | 9/4 Pcon+pSB2K3 Colony_4 |
6 | 9/4 Pcon+pSB2K3 Colony_8 | 15 | 9/4 Pcon+pSB2K3 Colony_5 |
7 | 9/4 Pcon+pSB2K3 Colony_9 | 16 | 9/4 Pcon+pSB2K3 Colony_6 |
8 | 9/4 Pcon+pSB3T5 Colony_10 | 17 | 1kb ladder |
9 | 9/4 pSB3T5(Nega) Colony_1 |
Lane | Colony PCR ProductsⅢ | Lane | Colony PCR ProductsⅢ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 pSB2K3(Nega) Colony_5 |
2 | 9/4 Pcon+pSB2K3 Colony_7 | 11 | 9/4 pSB1C3(Nega) Colony_1 |
3 | 9/4 Pcon+pSB2K3 Colony_8 | 12 | 9/4 pSB1C3(Nega) Colony_2 |
4 | 9/4 Pcon+pSB2K3 Colony_9 | 13 | 9/4 pSB1C3(Nega) Colony_3 |
5 | 9/4 Pcon+pSB2K3 Colony_10 | 14 | 9/4 pSB1C3(Nega) Colony_4 |
6 | 9/4 pSB2K3(Nega) Colony_1 | 15 | 9/4 pSB1C3(Nega) Colony_5 |
7 | 9/4 pSB2K3(Nega) Colony_2 | 16 | 9/4 pSB1C3(Nega) Colony_6 |
8 | 9/4 pSB2K3(Nega) Colony_3 | 17 | 1kb ladder |
9 | 9/4 pSB2K3(Nega) Colony_4 |
Lane | Colony PCR ProductsⅣ | Lane | Colony PCR ProductsⅣ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 Pcon+pSB1C3 Colony_5 |
2 | 9/4 pSB1C3(Nega) Colony_7 | 11 | 9/4 Pcon+pSB1C3 Colony_6 |
3 | 9/4 pSB1C3(Nega) Colony_8 | 12 | 9/4 Pcon+pSB1C3 Colony_7 |
4 | 9/4 pSB1C3(Nega) Colony_9 | 13 | 9/4 Pcon+pSB1C3 Colony_8 |
5 | 9/4 pSB1C3(Nega) Colony_10 | 14 | 9/4 Pcon+pSB1C3 Colony_9 |
6 | 9/4 Pcon+pSB1C3 Colony_1 | 15 | 9/4 Pcon+pSB1C3 Colony_10 |
7 | 9/4 Pcon+pSB1C3 Colony_2 | 16 | 8/22 Miniprep BBa_I732095 Colony_3 |
8 | 9/4 Pcon+pSB1C3 Colony_3 | 17 | 1kb ladder |
9 | 9/4 Pcon+pSB1C3 Colony_4 |
Lane | Colony PCR ProductsⅤ |
---|---|
1 | 1kb ladder |
2 | 9/4 Pcon+pSB1C3 Colony_11 |
3 | 9/4 Negative Control |
4 | 8/22 Miniprep BBa_I732095 Colony_3 |
5 | - |
6 | - |
7 | - |
8 | - |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | 9/4 pSB2K3(E+P) | 5 |
3 | - | - |
4 | 9/4 pSB2K3(E+P) | 25 |
5 | - | - |
6 | 9/4 pSB2K3(Nega) | 10 |
Lane | Restriction Enzyme Digestion ProductⅡ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | 9/4 pSB3T5(E+P) | 5 |
3 | - | - |
4 | 9/4 pSB3T5(E+P) | 25 |
5 | - | - |
6 | 9/4 pSB3T5(Nega) | 10 |
Lane | Restriction Enzyme Digestion ProductⅢ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | 9/4 pSB4A5(E+P) | 5 |
3 | - | - |
4 | 9/4 pSB4A5(E+P) | 25 |
5 | - | - |
6 | 9/4 pSB4A5(Nega) | 10 |
Lane | Restriction Enzyme Digestion ProductⅣ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | - | - |
3 | - | - |
4 | 9/4 pSB1C3(E+P) | 10 |
5 | - | - |
6 | - | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/4 pSB2K3(E+P) | 36 | 1.25 | 0.24 |
9/4 pSB3T5(E+P) | 10 | 1.00 | -/td> |
9/4 pSB4A5(E+P) | 40 | - | 0.01 |
9/4 pSB1C3(E+P) | 75 | 1.35 | 0.14 |
9/8
Cloning PCR
Target | mamB | mamQ | mamL |
---|---|---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 | 12.5 | 12.5 |
Fw Primer/(µl) | 1.5(mamB) | 1.5(mamQ) | 1.5(mamL) |
Rv Primer/(µl) | 1.5(mamB) | 1.5(mamQ) | 1.5(mamL) |
AMB-1 Genome/(µl) | 1 | 1 | 1 |
MilliQ/(µl) | 10 | 10 | 10 |
TOTAL/(µl) | 25 | 25 | 25 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 5min | 1time |
Denature | 98℃ | 20sec | 25cycle |
Annealing | 65℃ | 15sec | 25cycle |
Extension | 72℃ | 5min | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 4℃ | - | - |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
Pcon | 1 | pSB3T5 | 10 | 1 | 11 | 0 | 22 |
-(Negative Control) | 0 | pSB1C3 | 3 | 0 | 3 | 0 | 6 |
Electrophoresis
Lane | Cloning PCR Products |
---|---|
1 | 1kb ladder |
2 | 9/8 Cloning PCR (AMB-1 mamB) |
3 | 9/8 Cloning PCR (AMB-1 mamQ) |
4 | 9/8 Cloning PCR (AMB-1 mamL) |
5 | 1kb ladder |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/8 Ligation Pcon+pSB3T5 | 3 | 30 | 33 | LB(TET) |
9/8 Ligation pSB3T5(Negative Control) | 3 | 30 | 33 | LB(TET) |
Liquid Culture
Name | medium |
---|---|
9/3 Transformation Pcon+pSB1C3 Colony_8 | Plusgrow medium(CP)*2 |
9/9
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/8 Cloning PCR (AMB-1 mamB) | 165 | 1.54 | 1.57 |
9/8 Cloning PCR (AMB-1 mamQ) | 250 | 1.69 | 1.92 |
9/8 Cloning PCR (AMB-1 mamL) | 190 | 1.56 | 1.79 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/8 Liquid Culture Pcon+pSB1C3 | 90 | 1.65 | 1.17 |
Colony PCR
NameⅠ |
---|
- |
9/8 Transformation Pcon+pSB3T5 Colony_1 |
9/8 Transformation Pcon+pSB3T5 Colony_2 |
9/8 Transformation Pcon+pSB3T5 Colony_3 |
9/8 Transformation Pcon+pSB3T5 Colony_4 |
9/8 Transformation Pcon+pSB3T5 Colony_5 |
9/8 Transformation pSB3T5(Nega) Colony_1 |
Negative control |
Electrophoresis
Lane | Cloning PCR Products |
---|---|
1 | 1kb ladder |
2 | 9/8 Colony PCR Pcon+pSB3T5 Colony_1 |
3 | 9/8 Colony PCR Pcon+pSB3T5 Colony_2 |
4 | 9/8 Colony PCR Pcon+pSB3T5 Colony_3 |
5 | 9/8 Colony PCR Pcon+pSB3T5 Colony_4 |
6 | 9/8 Colony PCR Pcon+pSB3T5 Colony_5 |
7 | 9/8 Colony PCR pSB3T5(Nega) Colony_1 |
8 | 9/8 Colony PCR Nega |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Pst1/(µl) | Spe1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
9/9 Miniprep Pcon+pSB1C3 | 22 | 1 | 1 | 3(H) | 3 | 30 |
9/9 Miniprep Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 1(H) | 8 | 10 |
8/2 Miniprep Pcon Colony_4 | 14 | 1 | 1 | 3(H) | 11 | 30 |
8/2 Miniprep Pcon Colony_4(Nega) | 1 | 0 | 0 | 1(H) | 8 | 10 |
9/10
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | 9/10 Digestion Pcon+pSB1C3(S+P) | - |
4 | - | - |
5 | 9/10 Digestion Pcon+pSB1C3(Nega) | - |
6 | - | - |
7 | Pcon(X+P) | - |
8 | - | - |
9 | Pcon(Nega) | - |
10 | 1kb ladder | - |
11 | - | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Pcon(X+P) | 70 | 1.40 | 0.13 |
PCR
Target | E+X+RBS+mamB+S | X+RBS+mamL+His+S+P | X+RBS+mamQ+His+S+P |
---|---|---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 | 12.5 | 12.5 |
Fw Primer/(µl) | 0.75(E+X+RBS+mamB) | 0.75(X+RBS+mamL) | 0.75(X+RBS+mamQ) |
Rv Primer/(µl) | 0.75(S+mamB) | 0.75(P+S+His+mamL) | 0.75(P+S+His+mamQ) |
9/9 DNA Purification Product/(µl) | Trace | Trace | Trace |
MilliQ/(µl) | 11 | 11 | 11 |
TOTAL/(µl) | 25 | 25 | 25 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 5min | 1time |
Denature | 98℃ | 20sec | 25cycle |
Annealing | 60℃ | 15sec | 25cycle |
Extension | 72℃ | 15sec | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
Electrophoresis
Lane | Cloning PCR Products |
---|---|
1 | 1kb ladder |
2 | 9/10 PCR E+X+RBS+mamB+S(922bp) |
3 | 9/10 PCR X+RBS+mamL+His+S+P(340bp) |
4 | - |
5 | 1kb ladder |
6 | 9/10 PCR X+RBS+mamQ+His+S+P(953bp) |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/10 PCR E+X+RBS+mamB+S | 200 | 1.84 | 2.15 |
9/10 PCR X+RBS+mamL+His+S+P | 120 | 1.69 | 1.84 |
9/10 PCR X+RBS+mamQ+His+S+P | 200 | 1.70 | 2.16 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Pst1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
9/10 PCR E+X+RBS+mamB+S | 10 | 1 | 1 | 3(H) | 15 | 30 |
9/10 PCR X+RBS+mamL+His+S+P | 16.7 | 1 | 1 | 3(H) | 8.3 | 30 |
9/10 PCR X+RBS+mamQ+His+S+P | 10 | 1 | 1 | 3(H) | 15 | 30 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
9/10 DNA Purification mamQ | 1 | YCplac111 | 1 | 1 | 5 | 2 | 10 |
9/10 DNA Purification mamL | 1 | YCplac111 | 1 | 1 | 5 | 2 | 10 |
9/10 DNA Purification mamB | 1 | YCplac111 | 1 | 1 | 5 | 2 | 10 |
Control | 0 | YCplac111 | 1 | 1 | 5 | 2 | 9 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/10 Ligation mamQ+YCplac111 | - | - | - | - |
9/10 Ligation mamL+YCplac111 | - | - | - | - |
9/10 Ligation mamB+YCplac111 | - | - | - | - |
9/11
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/10 Digestion mamB(X+P) | 65 | 1.68 | 0.51 |
9/10 Digestion mamL(X+P) | 30 | 1.95 | 0.81 |
9/10 Digestion mamQ(X+P) | 60 | 1.65 | 1.22 |
Electrophoresis
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
- | - | - | - | - | - | - | - |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/11 Ligation mamL | 2 | 10 | 12 | - |
9/11 Ligation mamQ | 1 | 5 | 6 | - |
Liquid Culture
Name | medium |
---|---|
9/8 Master Pcon+pSB1C3 Colony_3 | Plusgrow medium(CP) |
9/10 Transformation mamL+YCplac111 | Plusgrow medium(AMP) |
9/10 Transformation mamQ+YCplac111 | Plusgrow medium(AMP) |
9/12
Colony PCR
NameⅠ |
---|
Electrophoresis
Lane | Colony PCR Products |
---|---|
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/11 Liquid Culture Pcon+pSB1C3 | 110 | 1.83 | 2.63 |
9/11 Liquid Culture mamL+YCplac111 | 300 | 1.75 | 2.38 |
9/11 Liquid Culture mamQ+YCplac111 | 160 | 1.81 | 2.37 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Pst1/(µl) | Spe1/(µl) | Buffur/(µl) | BSA | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|
9/12 Miniprep mamL+YCplac111 | 6.7 | 1 | 1 | 0 | 3(H) | 3 | 15.3 | 30 |
9/12 Miniprep mamQ+YCplac111 | 12.5 | 1 | 1 | 0 | 3(H) | 3 | 9.5 | 30 |
9/12 Miniprep Pcon+pSB1C3 | 18.1 | 0 | 1 | 1 | 3(H) | 0 | 6.9 | 30 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
9/12 Digestion mamB(E+S) | 3 | 9/8 Digestion pSB1C3(E+S) | 1 | 1 | 5 | 0 | 10 |
9/10 mamB | 0.5 | YCplac111 | 1 | 1 | 5 | 2.5 | 10 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB(E+S) | 50 | 1.75 | 2.04 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/12 Ligation mamB+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/12 Ligation mamB+YCplac111 | 1 | 10 | 11 | LB(AMP) |
Colony PCR
NameⅠ | NameⅡ |
---|---|
9/11 Transformation mamL+pSB1A2 Colony_1 | 9/11 Transformation mamL+pSB1A2 Colony_9 |
9/11 Transformation mamL+pSB1A2 Colony_2 | 9/11 Transformation mamL+pSB1A2 Colony_10 |
9/11 Transformation mamL+pSB1A2 Colony_3 | 9/11 Transformation mamQ+pSB1A2 Colony_1 |
9/11 Transformation mamL+pSB1A2 Colony_4 | 9/11 Transformation mamQ+pSB1A2 Colony_2 |
9/11 Transformation mamL+pSB1A2 Colony_5 | 9/11 Transformation mamQ+pSB1A2 Colony_3 |
9/11 Transformation mamL+pSB1A2 Colony_6 | 9/11 Transformation mamQ+pSB1A2 Colony_4 |
9/11 Transformation mamL+pSB1A2 Colony_7 | 9/11 Transformation mamQ+pSB1A2 Colony_5 |
9/11 Transformation mamL+pSB1A2 Colony_8 | 9/11 Transformation mamQ+pSB1A2 Colony_6 |
Electrophoresis
Lane | Colony PCR ProductsⅠ | Lane | Colony PCR ProductsⅠ |
---|---|---|---|
1 | 9/12 mamL+pSB1A2 Colony_1 | 10 | 9/12 mamL+pSB1A2 Colony_9 |
2 | 9/12 mamL+pSB1A2 Colony_2 | 11 | 9/12 mamL+pSB1A2 Colony_10 |
3 | 9/12 mamL+pSB1A2 Colony_3 | 12 | 9/12 mamQ+pSB1A2 Colony_1 |
4 | 9/12 mamL+pSB1A2 Colony_4 | 13 | 9/12 mamQ+pSB1A2 Colony_2 |
5 | 9/12 mamL+pSB1A2 Colony_5 | 14 | 9/12 mamQ+pSB1A2 Colony_3 |
6 | 9/12 mamL+pSB1A2 Colony_6 | 15 | 9/12 mamQ+pSB1A2 Colony_4 |
7 | 9/12 mamL+pSB1A2 Colony_7 | 16 | 9/12 mamQ+pSB1A2 Colony_5 |
8 | 9/12 mamL+pSB1A2 Colony_8 | 17 | 9/12 mamQ+pSB1A2 Colony_6 |
9 | 1kb ladder |
Colony PCR
NameⅠ |
---|
9/11 Transformation mamL+pSB1A2 Green_1 |
9/11 Transformation mamL+pSB1A2 Green_2 |
9/11 Transformation mamL+pSB1A2 Green_3 |
9/11 Transformation mamL+pSB1A2 Green_4 |
9/11 Transformation mamL+pSB1A2 Green_5 |
9/11 Transformation mamL+pSB1A2 Black_7 |
9/11 Transformation mamL+pSB1A2 Black_8 |
9/11 Transformation mamQ+pSB1A2 Black_1 |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | 9/12 mamL+pSB1A2 Green_1 |
2 | 9/12 mamL+pSB1A2 Green_2 |
3 | 9/12 mamL+pSB1A2 Green_3 |
4 | 9/12 mamL+pSB1A2 Green_4 |
5 | 9/12 mamL+pSB1A2 Green_5 |
6 | 9/12 mamL+pSB1A2 Black_7 |
7 | 9/12 mamL+pSB1A2 Black_8 |
8 | 9/12 mamQ+pSB1A2 Black_1 |
9 | 1kb ladder |
Liquid Culture
Name | medium |
---|---|
9/11 Transformation mamQ+pSB1A2 Colony_1 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_2 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_3 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_4 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_5 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_6 | Plusgrow medium(AMP) |
9/13
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/12 Liquid Culture mamQ+pSB1A2 Colony_1 Error | - | - | - |
9/12 Liquid Culture mamQ+pSB1A2 Colony_2 Error | - | - | - |
9/12 Liquid Culture mamQ+pSB1A2 Colony_3 Error | - | - | - |
9/12 Liquid Culture mamQ+pSB1A2 Colony_4 | 80 | 2.02 | 2.76 |
9/12 Liquid Culture mamQ+pSB1A2 Colony_5 | 70 | 2.13 | 3.41 |
9/12 Liquid Culture mamQ+pSB1A2 Colony_6 | 110 | 1.96 | 1.70 |
9/12 Liquid Culture Pcon+pSB1C3 | 110 | 1.96 | 1.70 |
PCR Labeling and Sequence
Target | 9/13 mamQ+pSB1A2 Colony_4 | 9/13 mamQ+pSB1A2 Colony_5 | 9/13 mamQ+pSB1A2 Colony_6 | Pcon+pSB1A2 | 9/13 mamQ+pSB1A2 Colony_4 | 9/13 mamQ+pSB1A2 Colony_5 | 9/13 mamQ+pSB1A2 Colony_6 |
---|---|---|---|---|---|---|---|
Template/(µl) | 5 | 4 | 6 | 4 | 5 | 6 | 4 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer/(µl) | 0.5(VF) | 0.5(VF) | 0.5(VF) | 0.5(VF) | 0.5(VR) | 0.5(VR) | 0.5(VR) |
MilliQ/(µl) | 2.75 | 1.75 | 3.75 | 3.75 | 2.75 | 1.75 | 3.75 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Target | 9/12 mamQ+YCplac111 | 9/12 mamL+YCplac111 | 9/12 mamQ+YCplac111 | 9/12 mamL+YCplac111 | 9/12 mamQ+YCplac111 |
---|---|---|---|---|---|
Template/(µl) | 3 | 1.5 | 3 | 1.5 | 3 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer/(µl) | 0.5(M13F) | 0.5(M13F) | 0.5(M13R) | 0.5(M13R) | 0.5(seqpLQB-2) |
MilliQ/(µl) | 4.75 | 6.25 | 4.75 | 6.25 | 4.75 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | 9/12 Digestion mamQ+YCpla111(X+P)(992bp) | - |
4 | - | - |
5 | - | - |
6 | - | - |
7 | 9/12 Digestion mamL+YCpla111(X+P)(340bp) | - |
8 | - | - |
9 | 9/12 Digestion Pcon+pSB1C3(Nega)(5600bp) | - |
10 | - | - |
11 | 9/12 Digestion Pcon+pSB1C3(S+P)(2070bp) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/12 Digestion mamL+YCpla111(X+P) | 10 | 1.00 | 0.70 |
9/12 Digestion Pcon+pSB1C3(S+P) | 150 | 1.25 | 0.71 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | EcoR1/(µl) | Buffur/(µl) | BSA | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/13 Miniprep mamQ+pSB1A2 Colony_4 | 12.5 | 0.5 | 0 | 0.5 | 0 | 1.7(M) | 1.6 | 0 | 16.8 |
9/13 Miniprep mamQ+pSB1A2 Colony_5 | 14.3 | 0.5 | 0 | 0.5 | 0 | 1.9(M) | 1.86 | 0 | 19.06 |
9/13 Miniprep mamQ+pSB1A2 Colony_6 | 9.1 | 0.5 | 0 | 0.5 | 0 | 1.5(M) | 1.5 | 1.9 | 15 |
9/13 Miniprep mamQ+pSB1A2 Colony_6(Nega) | 3 | 0 | 0 | 0 | 0 | 0.5(M) | 0.5 | 1 | 5 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
9/13 Gel Extraction mamL(X+P) | 3 | Pcon+pSB1C3(S+P) | 1 | 1 | 5 | 0 | 10 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/12 Liquid Culture Pcon+pSB1C3 | 240 | 1.78 | 1.59 |
9/14
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 3 |
2 | - | - |
3 | 9/13 mamQ Colony_4(X+P) | 16.8 |
4 | - | - |
5 | 1kb ladder | 3 |
6 | - | - |
7 | 9/13 mamQ Colony_5(X+P) | 19.06 |
8 | - | - |
9 | 9/13 mamQ Colony_6(Nega) | 5 |
10 | - | - |
11 | 9/13 mamQ Colony_6(X+P) | 15 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamB(E+S) | 4 | pSB1C3(E+S) | 3 | 1 | 8 | 0 | 16 |
mamL(X+P) | 3.3 | pSB1C3(E+S) | 0.7 | 1 | 5 | 0 | 10 |
PCR
Target | E+X+RBS+mamB+S |
---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 |
Fw Primer/(µl) | 0.75(E+X+RBS+mamB) |
Rv Primer/(µl) | 0.75(S+mamB) |
9/9 DNA Purification Product/(µl) | Trace |
MilliQ/(µl) | 11 |
TOTAL/(µl) | 25 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 5min | 1time |
Denature | 98℃ | 20sec | 25cycle |
Annealing | 60℃ | 15sec | 25cycle |
Extension | 72℃ | 15sec | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/14 Ligation Pcon+mamL+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/14 Ligation Pcon+mamL+pSB1C3(Nega) | 1 | 10 | 11 | LB(CP) |
9/14 Ligation mamB+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/15
Colony PCR
NameⅠ | NameⅡ |
---|---|
9/14 Transformation mamB+pSB1C3 Colony_1 | 9/14 Transformation mamB+pSB1C3 Colony_9 |
9/14 Transformation mamB+pSB1C3 Colony_2 | 9/14 Transformation mamB+pSB1C3 Colony_10 |
9/14 Transformation mamB+pSB1C3 Colony_3 | 9/14 Transformation mamB+pSB1C3 Colony_11 |
9/14 Transformation mamB+pSB1C3 Colony_4 | 9/14 Transformation mamB+pSB1C3 Colony_12 |
9/14 Transformation mamB+pSB1C3 Colony_5 | 9/14 Transformation mamB+pSB1C3 Colony_13 |
9/14 Transformation mamB+pSB1C3 Colony_6 | 9/14 Transformation mamB+pSB1C3 Colony_14 |
9/14 Transformation mamB+pSB1C3 Colony_7 | 9/14 Transformation mamB+pSB1C3 Colony_15 |
9/14 Transformation mamB+pSB1C3 Colony_8 | - |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | 9/14 mamB+pSB1C3 Colony_1 |
2 | 9/14 mamB+pSB1C3 Colony_2 |
3 | 9/14 mamB+pSB1C3 Colony_3 |
4 | 9/14 mamB+pSB1C3 Colony_4 |
5 | 9/14 mamB+pSB1C3 Colony_5 |
6 | 9/14 mamB+pSB1C3 Colony_6 |
7 | 9/14 mamB+pSB1C3 Colony_7 |
8 | 9/14 mamB+pSB1C3 Colony_8 |
9 | 1kb ladder |
10 | 9/14 mamB+pSB1C3 Colony_9 |
11 | 9/14 mamB+pSB1C3 Colony_10 |
12 | 9/14 mamB+pSB1C3 Colony_11 |
13 | 9/14 mamB+pSB1C3 Colony_12 |
14 | 9/14 mamB+pSB1C3 Colony_13 |
15 | 9/14 mamB+pSB1C3 Colony_14 |
16 | 9/14 mamB+pSB1C3 Colony_15 |
Colony PCR
NameⅠ |
---|
9/14 Transformation Pcon+mamL+SBpSB1C3 Colony_1 |
9/14 Transformation mamB+pSB1C3 Colony_9 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
mamB+YCplac111 | 1 | 10 | 11 | LB(AMP) |
Pcon+mamL+pSB1C3 | 1 | 10 | 11 | LB(CP) |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB+pSB1C3 Colony_9 | - | - | - |
mamB+pSB1C3 Colony_10 | - | - | - |
mamB+pSB1C3 Colony_11 | - | - | - |
mamL+pSB1A2 Colony_1 | 170 | 1.74 | 1.41 |
mamL+pSB1A2 Colony_2 | 140 | 1.95 | 1.43 |
mamL+pSB1A2 Colony_3 | 135 | 1.95 | 1.60 |
mamL+pSB1A2 Colony_4 | - | - | - |
mamL+pSB1A2 Colony_5 | - | - | - |
mamL+pSB1A2 Colony_6 | - | - | - |
Liquid Culture
Name | medium |
---|---|
9/14 Transformation Pcon+mamL+pSB1C3 Colony_1 | Plusgrow medium(CP) |
9/14 Transformation mamB+pSB1C3 Colony_9 | Plusgrow medium(CP) |
9/14 Transformation mamB+pSB1C3 Colony_10 | Plusgrow medium(CP) |
9/14 Transformation mamB+pSB1C3 Colony_11 | Plusgrow medium(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | MilliQ/(µl) | Buffur/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/15 DNA Purification mamB | 25 | 1 | 0 | 1 | 0 | 0 | 0 | 3(H) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_1 | 11.8 | 0 | 1 | 0 | 1 | 3 | 10.2 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_1(Nega) | 0.6 | 0 | 0 | 0 | 0 | 1 | 8.4 | 1(M) | 10 |
9/15 Mniprep mamL+pSB1A2 Colony_2 | 14.3 | 0 | 1 | 0 | 1 | 3 | 7.7 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_2(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 8.3 | 1(M) | 10 |
9/15 Mniprep mamL+pSB1A2 Colony_3 | 14.8 | 0 | 1 | 0 | 1 | 3 | 7.2 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_3(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 8.3 | 1(M) | 10 |
9/15 Mniprep mamL+pSB1A2 Colony_4 | 13.3 | 0 | 1 | 0 | 1 | 3 | 8.7 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_4(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 8.3 | 1(M) | 10 |
9/13 Pcon+pSB1C3 | 20 | 0 | 0 | 1 | 1 | 0 | 5 | 3(H) | 30 |
9/13 Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 6 | 3(H) | 10 |
PCR
Target | mamB Colony_10 | mamB Colony_11 |
---|---|---|
2×PrimeSTAR Max Premix/(µl) | 25 | 25 |
Fw mamB Mutation Primer/(µl) | 1 | 1 |
Rv mamB Mutation Primer/(µl) | 1 | 1 |
9/15 Miniprep mamB+pSB1C3/(µl) | Colony_10(Trace) | Colony_11(Trace) |
MilliQ/(µl) | 23 | 23 |
TOTAL/(µl) | 50 | 50 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 2min | 1time |
Denature | 98℃ | 10sec | 30cycle |
Annealing | 55℃ | 15sec | 30cycle |
Extension | 72℃ | 15sec | 30cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
9/16
PCR Labeling and Sequence
Target | 9/15 Pcon+mamL+pSB1C3 | 9/15 mamL+pSB1A2 Colony_1 | 9/15 mamL+pSB1A2 Colony_2 | 9/15 mamL+pSB1A2 Colony_3 | 9/15 mamL+pSB1A2 Colony_4 | 9/15 mamB+pSB1C3 Colony_9 | 9/15 mamB+pSB1C3 Colony_10 | 9/15 mamB+pSB1C3 Colony_11 |
---|---|---|---|---|---|---|---|---|
Template/(µl) | 1.8 | 2.35 | 2.9 | 3.0 | 3.0 | 1.14 | 1.2 | 1.2 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer(VF)/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
MilliQ/(µl) | 5.95 | 5.4 | 4.85 | 4.75 | 4.75 | 6.61 | 6.55 | 6.55 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Target | 9/15 Pcon+mamL+pSB1C3 | 9/15 mamL+pSB1A2 Colony_1 | 9/15 mamL+pSB1A2 Colony_2 | 9/15 mamL+pSB1A2 Colony_3 | 9/15 mamB+pSB1C3 Colony_9 | 9/15 mamB+pSB1C3 Colony_10 | 9/15 mamB+pSB1C3 Colony_11 |
---|---|---|---|---|---|---|---|
Template/(µl) | 1.8 | 2.35 | 2.9 | 3.0 | 1.14 | 1.2 | 1.2 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer(VR)/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
MilliQ/(µl) | 5.95 | 5.4 | 4.85 | 4.75 | 6.61 | 6.55 | 6.55 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 55℃ | 5sec | 30cycle |
Extension | 72℃ | 4min | 30cycle |
Final elongation | 72℃ | 1min | 1time |
Final hold | 4℃ | - | - |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | 1kb ladder | - |
3 | 9/15 mamL Colony_1(X+P) | - |
4 | - | - |
5 | 9/15 mamL Colony_2(Nega) | - |
6 | - | - |
7 | 9/15 mamL Colony_2(X+P) | - |
8 | 1kb ladder | - |
9 | 1kb ladder | - |
10 | 9/15 mamL Colony_3(Nega) | - |
11 | 9/15 mamL Colony_3(X+P) | - |
Lane | Restriction Enzyme Digestion ProductⅡ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | - | - |
4 | 9/15 mamQ(X+P) | - |
5 | - | - |
6 | 9/15 mamQ(Nega) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamL Colony_1 | 45 | 1.69 | 0.60 |
mamL Colony_2 | 60 | 1.33 | 0.70 |
mamL Colony_3 | 40 | 1.76 | 0.08 |
mamQ | 65 | 1.35 | 0.83 |
Dephosphorylation
Sample/(µL) | |
---|---|
9/15 Digestion Pcon+pSB1C3(S+P) | - |
9/15 Gel Extraction Pcon+pSB1C3(S+P) | - |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/15 Mutation PCR mamB+pSB1C3 Colony_10 | 225 | 1.64 | 1.74 |
9/15 Mutation PCR mamB+pSB1C3 Colony_11 | 205 | 1.59 | 1.76 |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | 9/15 Digestion Pcon+pSB1C3(S+P) | - |
4 | - | - |
5 | 1kb ladder | - |
6 | - | - |
7 | 9/15 Gel Extraction Pcon+pSB1C3(S+P) | - |
8 | - | - |
9 | 1kb ladder | - |
10 | - | - |
11 | - | - |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/16 DNA Purification mamB+pSB1C3 Colony_10 | 1 | 10 | 11 | LB(CP) |
9/16 DNA Purification mamB+pSB1C3 Colony_11 | 1 | 10 | 11 | LB(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | MilliQ/(µl) | Buffur/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/15 mamQ+pSB1A2 Colony_4 | 26.7 | 0 | 2 | 0 | 2 | 6 | 17.3 | 6(M) | 60 |
9/15 mamQ+pSB1A2 Colony_4(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 7.3 | 1(M) | 10 |
9/15 Pcon+mamL+pSB1C3 | 15 | 0 | 0 | 2 | 2 | 0 | 35 | 6(H) | 60 |
9/15 Pcon+mamL+pSB1C3(Nega) | 0.5 | 0 | 0 | 0 | 0 | 0 | 8.5 | 1(H) | 10 |
PCR
Target | E+Pcon+X+RBS+mamB+His+S(*2) |
---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 |
Fw E+Pcon+X+RBS+mamB/(µl) | 0.75 |
Rv S+His+mamB/(µl) | 0.75 |
9/9 DNA Purification mamB/(µl) | Trace |
MilliQ/(µl) | 11 |
TOTAL/(µl) | 25 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/15 mamB+pSB1C3 Colony_9 | 350 | 1.68 | 1.81 |
9/15 mamB+pSB1C3 Colony_10 | 325 | 1.65 | 1.50 |
9/15 mamB+pSB1C3 Colony_11 | 340 | 1.67 | 1.68 |
Pcon+mamL+pSB1C3 | 220 | 1.75 | 2.09 |
9/17
Colony PCR
NameⅠ |
---|
9/16 Transformation Mutation mamB Colony_11_1 |
9/16 Transformation Mutation mamB Colony_11_2 |
9/16 Transformation Mutation mamB Colony_11_3 |
9/16 Transformation Mutation mamB Colony_11_4 |
9/16 Transformation Mutation mamB Colony_10_1 |
9/16 Transformation Mutation mamB Colony_10_2 |
9/16 Transformation Mutation mamB Colony_10_3 |
9/16 Transformation Mutation mamB Colony_10_4 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/15 Pcon+pSB1C3 Colony_3 | 110 | 1.66 | 1.48 |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | 9/16 Mutation PCR Pcon+mamB+His | - |
2 | Pcon+mamL(Nega) | - |
3 | Pcon+mamL(S+P) | - |
4 | 1kb ladder | - |
5 | 9/16 Mutation PCR Pcon+mamB+His | - |
6 | - | - |
7 | mamQ+pSB1A2 Colony_4(X+P) | - |
8 | 1kb ladder | - |
9 | mamQ(Nega) | - |
10 | - | - |
11 | mamQ+pSB1A2 Colony_4(X+P) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Pcon+mamB+His | 245 | 1.87 | 2.10 |
mamQ+pSB1A2 Colony_4(X+P) | 35 | 1.87 | 0.580 |
Pcon+mamL(S+P) | 285 Error | 1.14 | 0.85 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamQ(X+P) | 3 | Pcon+mamL(S+P) | 1 | 1 | 5 | 0 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/17 Ligation Pcon+mamL+mamQ+pSB1C3 | 1 | 10 | 11 | LB(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Spe1/(µl) | Xba1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/17 Gel Extraction Pcon+mamB+His | 16.3 | 2 | 2 | 0 | 0 | 0 | 6(H) | 33.7 | 60 |
9/17 Gel Extraction Pcon+mamB+His(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(H) | 8 | 10 |
9/17 Miniprep Pcon+pSB1C3 | 36.4 | 0 | 2 | 0 | 2 | 0 | 6(H) | 13.6 | 60 |
9/17 Miniprep Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(H) | 8 | 10 |
Liquid Culture
Name | medium |
---|---|
Mutation mamB Colony_10_3 | Plusgrow medium(CP) |
Mutation mamB Colony_10_4 | Plusgrow medium(CP) |
Mutation mamB Colony_11_3 | Plusgrow medium(CP) |
Mutation mamB Colony_11_4 | Plusgrow medium(CP) |
mamQ+pSB1A2 Colony_4 | Plusgrow medium(AMP)*2 |
Pcon+mamL Colony_1 | Plusgrow medium(CP)*3.5 |
9/18
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/17 Liquid Culture Mutation mamB Colony_10_3 | 355 | 1.69 | 2.02 |
9/17 Liquid Culture Mutation mamB Colony_10_4 | 265 | 1.52 | 1.55 |
9/17 Liquid Culture Mutation mamB Colony_11_3 | 355 | 1.62 | 1.77 |
9/17 Liquid Culture Mutation mamB Colony_11_4 | 250 | 1.62 | 1.51 |
9/17 Liquid Culture mamQ+pSB1A2 Colony_4 | 290 | 1.41 | 1.10 |
9/17 Liquid Culture Pcon+mamL+pSB1C3 Colony_1 | 85 | 1.47 | 1.56 |
PCR Labeling and Sequence
Target | 9/18 Miniprep Mutation mamB Colony_10_3 | 9/18 Miniprep Mutation mamB Colony_10_4 | 9/18 Miniprep Mutation mamB Colony_11_3 | 9/18 Miniprep Mutation mamB Colony_11_4 | 9/18 Miniprep Mutation mamB Colony_10_3 | 9/18 Miniprep Mutation mamB Colony_10_4 | 9/18 Miniprep Mutation mamB Colony_11_3 | 9/18 Miniprep Mutation mamB Colony_11_4 |
---|---|---|---|---|---|---|---|---|
Template/(µl) | 1.1 | 1.5 | 1.1 | 1.6 | 1.1 | 1.5 | 1.1 | 1.6 |
Big dye/(µl) | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
5×Buffer/(µl) | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Primer/(µl) | 0.16(VF) | 0.16(VF) | 0.16(VF) | 0.16(VF) | 0.16(VR) | 0.16(VR) | 0.16(VR) | 0.16(VR) |
MilliQ/(µl) | 5.74 | 5.34 | 5.74 | 5.24 | 5.74 | 5.34 | 5.74 | 5.24 |
TOTAL/(µl) | 10 | 10 | 10 | 10 | 10 | 10 | 10 | 10 |
Target | 9/18 Miniprep Mutation mamB Colony_10_3 | 9/18 Miniprep Mutation mamB Colony_10_4 | 9/18 Miniprep Mutation mamB Colony_11_3 | 9/18 Miniprep Mutation mamB Colony_11_4 |
---|---|---|---|---|
Template/(µl) | 1.1 | 1.5 | 1.1 | 1.6 |
Big dye/(µl) | 2 | 2 | 2 | 2 |
5×Buffer/(µl) | 1 | 1 | 1 | 1 |
Primer/(µl) | 0.16(pQLB seq_2) | 0.16(pQLB seq_2) | 0.16(pQLB seq_2) | 0.16(pQLB seq_2) |
MilliQ/(µl) | 5.74 | 5.34 | 5.74 | 5.24 |
TOTAL/(µl) | 10 | 10 | 10 | 10 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 50℃ | 5sec | 30cycle |
Extension | 60℃ | 4min | 30cycle |
Final elongation | 4℃ | 1min | 1time |
Final hold | 4℃ | - | - |
Colony PCR
NameⅠ | NameⅡ |
---|---|
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_1 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_9 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_2 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_10 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_3 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_11 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_4 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_12 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_5 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_13 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_6 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_14 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_7 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_15 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_8 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_16 |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_1 |
2 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_2 |
3 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_3 |
4 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_4 |
5 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_5 |
6 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_6 |
7 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_7 |
8 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_8 |
9 | 1kb ladder |
10 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_9 |
11 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_10 |
12 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_11 |
13 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_12 |
14 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_13 |
15 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_14 |
16 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_15 |
17 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_16 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/17 Digestion Pcon+mamB+His(E+S) | 165 | - | - |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 1kb ladder | - |
3 | 9/17 Digestion Pcon+pSB1C3(Nega) | - |
4 | 9/17 Digestion Pcon+pSB1C3(S+P) | - |
5 | - | - |
6 | - | - |
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | - | - |
3 | 1kb ladder | - |
4 | 9/17 Digestion Pcon+pSB1C3(S+P) | - |
5 | - | - |
6 | - | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/17 Digestion Pcon+pSB1C3 | - | - | - |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 10*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamQ(X+P) | 6 | 9/18 Gel Extraction Pcon+pSB1C3(S+P) | Trace | 0.5 | 1 | 2.5 | 10 |
9/18 DNA Purification Pcon+mamB+His(E+S) | 5 | 9/14 pSB3T5(E+S) | 2 | 0.5 | 1 | 1.5 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/18 Ligation Pcon+mamQ+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/18 Ligation Pcon+mamB+His+pSB3T5 | 1 | 10 | 11 | LB(TET) |
Liquid Culture
Name | medium |
---|---|
pSB3T5 | Plusgrow medium(TET)*2 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 | Plusgrow medium(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/18 Miniprep Mutation mamB Colony_10_3 | 11.2 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 80 |
9/18 Miniprep Mutation mamB Colony_10_3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_10_4 | 15.1 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 52.1 | 80 |
9/18 Miniprep Mutation mamB Colony_10_4(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_11_3 | 11.2 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 80 |
9/18 Miniprep Mutation mamB Colony_11_3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_11_4 | 16 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 51.2 | 80 |
9/18 Miniprep Mutation mamB Colony_11_4(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep mamQ+pSB1A2 | 34.5 | 0 | 5 | 0 | 5 | 2 | 20(D) | 133.5 | 200 |
9/18 Miniprep mamQ+pSB1A2(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/17 Miniprep Pcon+pSB1C3 | 40 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 27.2 | 80 |
9/17 Miniprep Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(B) | 8 | 10 |
9/18 Miniprep Pcon+mamL+pSB1C3 | 47 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 20.2 | 80 |
9/18 Miniprep Pcon+mamL+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(B) | 8 | 10 |
9/19
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/18 Liquid Culture pSB3T5 | 115 | 1.52 | 1.22 |
9/18 Liquid Culture Pcon+mamL+mamQ+pSB1C3 | 75 | 1.59 | 1.20 |
PCR Labeling and Sequence
Target | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 |
---|---|---|---|---|
Template/(µl) | 3.5 | 3.5 | 3.5 | 3.5 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 |
Primer/(µl) | 0.5(VF) | 0.5(VR) | 0.5(seq_1) | 0.5(seq_2) |
MilliQ/(µl) | 4.25 | 4.25 | 4.25 | 4.25 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 50℃ | 5sec | 30cycle |
Extension | 60℃ | 4min | 30cycle |
Final elongation | 4℃ | 1min | 1time |
Final hold | 4℃ | - | - |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | - | - |
3 | 9/18 Digestion Mutation mamB Colony_10_3(X+P) | 40 |
4 | 9/18 Digestion Mutation mamB Colony_10_3(Nega) | 10 |
5 | 1kb ladder | - |
6 | - | - |
7 | 9/18 Digestion Mutation mamB Colony_10_3(X+P) | 40 |
8 | - | - |
9 | 1kb ladder | - |
10 | 9/18 Digestion Mutation mamB Colony_10_4(Nega) | 10 |
11 | 9/18 Digestion Mutation mamB Colony_10_4(X+P) | 40 |
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | 9/18 Digestion mamQ+pSB1A2(X+P) | 200 |
2 | - | - |
3 | - | - |
4 | - | - |
5 | - | - |
6 | - | - |
Lane | SampleⅢ | Volume/(µl) |
---|---|---|
1 | 100b ladder | - |
2 | 9/18 Digestion Pcon+pSB1C3(Nega) | 10 |
3 | 9/18 Digestion Pcon+pSB1C3(S+P) | 80 |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB Colony_10_3(X+P) | - | - | - |
mamB Colony_10_4(X+P) | - | - | - |
mamQ+pSB1A2(X+P) | - | - | - |
Pcon+pSB1C3(S+P) | - | - | - |
Colony PCR
NameⅠ |
---|
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_1 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_2 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_3 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_4 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_5 |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | - |
2 | - |
3 | Pcon+mamQ+pSB1C3 Colony_1 |
4 | Pcon+mamQ+pSB1C3 Colony_2 |
5 | Pcon+mamQ+pSB1C3 Colony_3 |
6 | Pcon+mamQ+pSB1C3 Colony_4 |
7 | Pcon+mamQ+pSB1C3 Colony_5 |
8 | - |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 34.7 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 32.5 | 80 |
9/19 Miniprep pSB3T5 | 53.3 | 2 | 0 | 2 | 0 | 0.8 | 8(B) | 14 | 80 |
9/19 Miniprep pSB3T5(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(B) | 8 | 10 |
PCR
Target | Pcon+mamB+His |
---|---|
KOD Plus/(µl) | 1 |
10×Buffer/(µl) | 5 |
2mM dNTPS/(µl) | 5 |
25mM MgSO4/(µl) | 3 |
Fw Primer(E+Pcon+X+RBS+mamB)/(µl) | 2 |
Rv Primer(S+His+mamB)/(µl) | 2 |
Template/(µl) | 0.5 |
MilliQ/(µl) | 31.5 |
Total/(µl) | 50 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 2min | 1time |
Denature | 98℃ | 10sec | 25cycle |
Annealing | 55℃ | 15sec | 25cycle |
Extension | 72℃ | 1min | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/18 Digestion mamL+pSB1C3(S+P) | 55 | 1.66 | 1.66 |
9/19 PCR Pcon+mamB+His | 150 | 1.63 | 1.52 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/19 DNA Purification Pcon+mamB+His | 20 | 1 | 0 | 1 | 0 | 0.8 | 8(B) | 49.2 | 80 |
Liquid Culture
Name | medium |
---|---|
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_1 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_2 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_3 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_4 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_5 | Plusgrow medium(TET) |
Colony PCR
NameⅠ |
---|
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_1 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_2 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_3 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_4 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_5 |
9/20
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | - |
2 | 100b ladder |
3 | Pcon+mamQ+pSB1C3 Colony_1 |
4 | Pcon+mamQ+pSB1C3 Colony_2 |
5 | Pcon+mamQ+pSB1C3 Colony_3 |
6 | Pcon+mamQ+pSB1C3 Colony_4 |
7 | Pcon+mamQ+pSB1C3 Colony_5 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/19 Liquid Culture Pcon+mamQ+pSB1C3 Colony_3 | - | - | - |
9/19 Liquid Culture Pcon+mamQ+pSB1C3 Colony_5 | - | - | - |
Colony PCR
NameⅠ |
---|
Pcon+mamB+His+pSB3T5 Colony_1(VF+VR) |
Pcon+mamB+His+pSB3T5 Colony_1(seq_4+VR) |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | - |
2 | 100b ladder |
3 | 100b ladder |
4 | Pcon+mamB+His+pSB3T5 Colony_1(VF+VR) |
5 | Pcon+mamB+His+pSB3T5 Colony_1(seq_4+VR) |
6 | 100b ladder |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/18 Miniprep Mutation mamB Colony_10_3 | 11.2 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 80 |
9/18 Miniprep Mutation mamB Colony_10_3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_10_4 | 15.1 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 83.9 |
9/18 Miniprep Mutation mamB Colony_10_4(Nega) | 1 | 1 | 0 | 1 | 0 | 0 | 1(D) | 8 | 10 |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 100b ladder | - |
3 | Digestion Mutation mamB Colony_10_3(X+P) | - |
4 | - | - |
5 | - | - |
6 | - | - |
7 | Digestion Mutation mamB Colony_11_3(X+P) | - |
8 | Digestion Mutation mamB Colony_11_3(Nega) | - |
9 | 1kb ladder | - |
10 | - | - |
11 | Digestion Mutation mamB Colony_11_3(X+P) | - |
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 100b ladder | - |
3 | 9/19 Digestion pSB3T5(Nega) | - |
4 | 9/19 Digestion pSB3T5(E+S) | - |
Lane | SampleⅢ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 100b ladder | - |
3 | Digestion Mutation mamB Colony_11_4(X+P) | - |
4 | Digestion Mutation mamB Colony_11_4(Nega) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB Colony_10_3(X+P) | 60 | - | - |
mamB Colony_11_3(X+P) | 85 | 1.38 | 2.04 |
mamB Colony_11_4(X+P) | 60 | 0.58 | 2.32 |
pSB3T5(E+S) | 70 | 0.44 | 2.04 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Pcon+mamL+mamQ(S+P) | - | - | - |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamB Colony_10_3(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
mamB Colony_10_4(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
mamB Colony_11_3(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
mamB Colony_11_4(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
pSB3T5(E+S) | 1.4 | Pcon+mamB+His(E+S) | 2.6 | 1 | 5 | 0 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_10_3 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_10_4 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_11_3 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_11_4 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamB+His | 1 | 10 | 11 | LB(TET) |
9/22
Colony PCR
NameⅠ | NameⅡ | NameⅢ | NameⅣ |
---|---|---|---|
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_1 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_2 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_3 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_4 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_5 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_6 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_7 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_8 |
NameⅤ | NameⅥ |
---|---|
9/20 Transformation Pcon+mamB+His Colony_1 | 9/19 Transformation Pcon+mamB+His Colony_1 |
9/20 Transformation Pcon+mamB+His Colony_2 | 9/19 Transformation Pcon+mamB+His Colony_2 |
9/20 Transformation Pcon+mamB+His Colony_3 | 9/19 Transformation Pcon+mamB+His Colony_3 |
9/20 Transformation Pcon+mamB+His Colony_4 | - |
9/20 Transformation Pcon+mamB+His Colony_5 | - |
Electrophoresis
Lane | Colony PCR ProductsⅠ | Colony PCR ProductsⅡ |
---|---|---|
1 | Pcon+mamL+mamQ+mamB Colony_10_3_1 | Pcon+mamL+mamQ+mamB Colony_11_3_1 |
2 | Pcon+mamL+mamQ+mamB Colony_10_3_2 | Pcon+mamL+mamQ+mamB Colony_11_3_2 |
3 | Pcon+mamL+mamQ+mamB Colony_10_3_3 | Pcon+mamL+mamQ+mamB Colony_11_3_3 |
4 | Pcon+mamL+mamQ+mamB Colony_10_3_4 | Pcon+mamL+mamQ+mamB Colony_11_3_4 |
5 | Pcon+mamL+mamQ+mamB Colony_10_3_5 | Pcon+mamL+mamQ+mamB Colony_11_3_5 |
6 | Pcon+mamL+mamQ+mamB Colony_10_3_6 | Pcon+mamL+mamQ+mamB Colony_11_3_6 |
7 | Pcon+mamL+mamQ+mamB Colony_10_3_7 | Pcon+mamL+mamQ+mamB Colony_11_3_7 |
8 | Pcon+mamL+mamQ+mamB Colony_10_3_8 | Pcon+mamL+mamQ+mamB Colony_11_3_8 |
9 | 100b ladder | 100b ladder |
10 | Pcon+mamL+mamQ+mamB Colony_10_4_1 | Pcon+mamL+mamQ+mamB Colony_11_4_1 |
11 | Pcon+mamL+mamQ+mamB Colony_10_4_2 | Pcon+mamL+mamQ+mamB Colony_11_4_2 |
12 | Pcon+mamL+mamQ+mamB Colony_10_4_3 | Pcon+mamL+mamQ+mamB Colony_11_4_3 |
13 | Pcon+mamL+mamQ+mamB Colony_10_4_4 | Pcon+mamL+mamQ+mamB Colony_11_4_4 |
14 | Pcon+mamL+mamQ+mamB Colony_10_4_5 | Pcon+mamL+mamQ+mamB Colony_11_4_5 |
15 | Pcon+mamL+mamQ+mamB Colony_10_4_6 | Pcon+mamL+mamQ+mamB Colony_11_4_6 |
16 | Pcon+mamL+mamQ+mamB Colony_10_4_7 | Pcon+mamL+mamQ+mamB Colony_11_4_7 |
17 | Pcon+mamL+mamQ+mamB Colony_10_4_8 | Pcon+mamL+mamQ+mamB Colony_11_4_8 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 10*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamB Colony_10_3(X+P) | 1 | Pcon+mamL+mamQ(S+P) | 7.5 | 0.5 | 1 | 0 | 10 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | CLAP/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|---|
9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 34.8 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 1 | 31.4 | 80 |
Colony PCR
NameⅠ | NameⅡ | NameⅢ | NameⅣ |
---|---|---|---|
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_1 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_2 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_3 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_4 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_5 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_6 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_7 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_8 |
NameⅤ |
---|
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(VF+VR) |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(seq_4+VR) |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(L_F+B_R) |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(Q_F+B_R) |
Electrophoresis
Lane | Colony PCR ProductsⅠ | Colony PCR ProductsⅡ | Colony PCR ProductsⅢ |
---|---|---|---|
1 | Pcon+mamL+mamQ+mamB Colony_10_3_1 | Pcon+mamL+mamQ+mamB Colony_11_3_1 | - |
2 | Pcon+mamL+mamQ+mamB Colony_10_3_2 | Pcon+mamL+mamQ+mamB Colony_11_3_2 | - |
3 | Pcon+mamL+mamQ+mamB Colony_10_3_3 | Pcon+mamL+mamQ+mamB Colony_11_3_3 | - |
4 | Pcon+mamL+mamQ+mamB Colony_10_3_4 | Pcon+mamL+mamQ+mamB Colony_11_3_4 | - |
5 | Pcon+mamL+mamQ+mamB Colony_10_3_5 | Pcon+mamL+mamQ+mamB Colony_11_3_5 | - |
6 | Pcon+mamL+mamQ+mamB Colony_10_3_6 | Pcon+mamL+mamQ+mamB Colony_11_3_6 | - |
7 | Pcon+mamL+mamQ+mamB Colony_10_3_7 | Pcon+mamL+mamQ+mamB Colony_11_3_7 | - |
8 | Pcon+mamL+mamQ+mamB Colony_10_3_8 | Pcon+mamL+mamQ+mamB Colony_11_3_8 | - |
9 | 100b ladder | 100b ladder | 100b ladder |
10 | Pcon+mamL+mamQ+mamB Colony_10_4_1 | Pcon+mamL+mamQ+mamB Colony_11_4_1 | 9/19 Transformation Pcon+mamB+His Colony_1 |
11 | Pcon+mamL+mamQ+mamB Colony_10_4_2 | Pcon+mamL+mamQ+mamB Colony_11_4_2 | 9/19 Transformation Pcon+mamB+His Colony_2 |
12 | Pcon+mamL+mamQ+mamB Colony_10_4_3 | Pcon+mamL+mamQ+mamB Colony_11_4_3 | 9/19 Transformation Pcon+mamB+His Colony_3 |
13 | Pcon+mamL+mamQ+mamB Colony_10_4_4 | Pcon+mamL+mamQ+mamB Colony_11_4_4 | Pcon+mamL+mamQ+mamB Colony_11_3_2(VF+VR) |
14 | Pcon+mamL+mamQ+mamB Colony_10_4_5 | Pcon+mamL+mamQ+mamB Colony_11_4_5 | Pcon+mamL+mamQ+mamB Colony_11_3_2(seq_4+VR) |
15 | Pcon+mamL+mamQ+mamB Colony_10_4_6 | Pcon+mamL+mamQ+mamB Colony_11_4_6 | Pcon+mamL+mamQ+mamB Colony_11_3_2(L_F+B_R) |
16 | Pcon+mamL+mamQ+mamB Colony_10_4_7 | Pcon+mamL+mamQ+mamB Colony_11_4_7 | Pcon+mamL+mamQ+mamB Colony_11_3_2(Q_F+B_R) |
17 | Pcon+mamL+mamQ+mamB Colony_10_4_8 | Pcon+mamL+mamQ+mamB Colony_11_4_8 | - |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Pcon+mamQ+pSB1C3 Colony_3 | 85 | 1.51 | 0.79 |
Pcon+mamQ+pSB1C3 Colony_5 | 60 | 1.94 | 1.12 |
9/27
Western Blotting
Make the 20% acrilamid gel apray the following
Lane | Sample |
---|---|
1-5 9-12 | Sample buffer |
6 | T7-RBS-pSB1C3(control) |
7 | pL(pSB1C3) |
8 | protein marker |
Electrophoresis:200V 25mA 30min
Transcription:50V 200mA 73min
Liquid Culture
Sample |
---|
pLQB(9/22 master) |
pLQ(9/22 master) |
9/29
Liquid Culture
Sample |
---|
9/22 master pLQB |
9/22 master pLQ |
9/22 master pL |
9/22 master pQ-3 |
9/22 master pQ-5 |
9/20 master pB-22 |
9/20 master pB-23 |
Fixation
Osmic acid/(ml) | Phosphate buffer/(ml) | Total/(ml) |
---|---|---|
4 | 4 | 8 |
9/30
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/29 Liquid Culture pLQB | - | - | - |
9/29 Liquid Culture pLQ | - | - | - |
Western Blotting
Make the 20% acrilamid gel apray the following
Lane | Sample |
---|---|
2 | Marker |
3 | pLQB |
4 | pLQ |
5 | pL |
6 | pQ-3 |
7 | pQ-5 |
8 | pB |
9 | GTP-His |
10 | T7-RBS-pSB1C3(control) |
11 | Sample buffer |
Electrophoresis:200V 25mA 1h30min
Transcription:50V 200mA 73min
Liquid Culture
Sample |
---|
9/22 master pLQB |
9/22 master pQ(3) |
10/1
Ethanol Precipitation
Sample |
---|
9/28 pL(pSB1C3)(VF)(Miniprep product) |
9/28 pL(pSB1C3)(VR)(Miniprep product) |
9/22 pB(22)(VF)(Miniprep product) |
9/22 pB(22)(VR)(Miniprep product) |
9/22 pB(23)(VF) |
9/22 pB(23)(VR) |
10/1 pQ(3)(VF)(Miniprep product) |
10/1 pQ(3)(VR)(Miniprep product) |
10/1 pLQB(VF)(Miniprep product) |
10/1 pLQB(seq-1)(Miniprep product) |
10/1 pLQB(seq-2)(Miniprep product) |
10/1 pLQB(seq-3)(Miniprep product) |
10/1 pLQB(seq-4)(Miniprep product) |
10/1 pLQB(VR)(Miniprep product) |
Liquid Culture
Sample |
---|
9/22 master Plate pLQB |
9/22 master Plate pQ(3) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffer/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|
9/23 pQ | 30 | 3 | 0 | 3 | 1 | 9 | 44 | 90 |
pQ(control) | 1 | 0 | 0 | 0 | 0 | 1 | 8 | 10 |
9/2 Pcon(pSB1C3) | 30 | 0 | 3 | 3 | 1 | 9 | 44 | 90 |
9/2 Pcon(pSB1C3)(control) | 1 | 0 | 0 | 0 | 0 | 1 | 8 | 10 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/29 Liquid Culture pLQB | - | - | - |
9/29 Liquid Culture pQ(3) | - | - | - |
9/29 Liquid Culture pQ(22) | - | - | - |
9/29 Liquid Culture pQ(23) | - | - | - |
Sequence PCR
Target | 9/28 pL(pSB1C3)(VF)(Miniprep product) | 9/28 pL(pSB1C3)(VR)(Miniprep product) | 9/22 pB(22)(VF)(Miniprep product) | 9/22 M pB(22)(VR) | 9/22 pB(23)(VF) | 9/22 pB(23)(VR) | 10/1 M pQ(3)(VF) | 10/1 M pQ(3)(VR) | 10/1 M pLQB(VF) | 10/1 M pLQB(seq-1) | 10/1 M pLQB(seq-2) | 10/1 M pLQB(seq-3) | 10/1 M pLQB(seq-4) | 10/1 M pLQB(VR) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Template/(µl) | 4.7 | 4.7 | 1.6 | 1.6 | 3.2 | 3.2 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer(VF)/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
MilliQ/(µl) | 3.05 | 3.05 | 6.15 | 6.15 | 4.55 | 4.55 | 2.75 | 2.75 | 2.75 | 2.75 | 2.75 | 2.75 | 2.75 | 2.75 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 55℃ | 5sec | 30cycle |
Extension | 60℃ | 4min | 30cycle |
Final elongation | 4℃ | 1min | 1time |
Final hold | 4℃ | infinity | - |
Gel Extraction
(1)
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | blank | - |
2 | 1400b ladder | - |
3 | His-OE-1 | - |
4 | 1kb ladder | - |
5 | 750b ladder | - |
6 | His-OE-2 | - |
(2)
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
3,6 | pQ(X,P) | - |
4 | 100b ladder | - |
(3)
Lane | SampleⅢ | Volume/(µl) |
---|---|---|
3,6 | Pcon pSB1C3(S,P) | - |
4 | 1kb ladder | - |
(4)
Lane | SampleⅣ | Volume/(µl) |
---|---|---|
3 | DiDECARB-4 | - |
6 | DiDECARB-5 | - |
2 | DiDECARB-4(control) | - |
5 | DiDECARB-5(control) | - |
4 | 1kb ladder | - |
10/2
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
pLQB | 390 | 1.70 | 1.20 |
pLQ | 319 | 1.64 | 0.92 |
j04450 | 255 | 1.59 | 1.04 |
10/3
PCR
Target | Volume |
---|---|
10×buffur for KOD Plus Ver.2/(µl) | 5 |
2mMdNTPs/(µl) | 5 |
25mM MgSO4/(µl) | 3 |
VF Primer/(µl) | 1.5 |
VR Primer/(µl) | 1.5 |
template/(µl) | 1 |
KOD-plus/(µl) | 1 |
MilliQ/(µl) | 33 |
TOTAL/(µl) | 50 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
10/3 PB | 39.8 | 1.75 | 0.92 |
Digestion
Sample | DNA/(µl) | EcoRI/(µl) | Spe1/(µl) | BSA | Buffer/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|
10/3 Column pB | 15.8 | 1 | 1 | 0.2 | 2 | - | 20 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Pst1/(µl) | BSA | Buffer/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|
DiDECARB-4 | 10 | 2 | 2 | 0.4 | 4 | 21.6 | 40 |
DiDECARB-4(control) | 1 | 0 | 0 | 0 | 1 | 8 | 10 |
DiDECARB-5 | 10 | 2 | 2 | 0.4 | 4 | 21.6 | 40 |
DiDECARB-5(control) | 1 | 0 | 0 | 0 | 1 | 8 | 10 |
Gel Extraction
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
pSB1C3(X,P)-4 | 942 | 1.89 | 1.26 |
pSB1C3(X,P)-5 | 518 | 1.87 | 1.26 |
10/4
Digestion
Sample | DNA/(µl) | Xba1/(µl) | Pst1/(µl) | BSA | Buffer/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|
9/18 MP pL-pSB1C3(85) | 24 | 1 | 1 | 0.4 | 4 | 9.6 | 40 |
9/18 MP pL-pSB1C3(85)(control) | 1 | 0 | 0 | 0 | 1 | 8 | 10 |
9/18 MP Bµ-pSB1C3-11-3(355) | 6 | 1 | 1 | 0.4 | 4 | 27.6 | 40 |
9/18 MP Bµ-pSB1C3-11-3(355)(control) | 1 | 0 | 0 | 0 | 1 | 8 | 10 |
Gel Extraction
(1)
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | 10/4 Bµ pSB1C3-11-3(control) | - |
3,4 | 10/4 Bµ pSB1C3-11-3(XP) | - |
6 | ladder | - |
(2)
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | ladder | - |
3,4 | 10/4 pL-pSB1C3(XP) | - |
6 | 10/4 pL-pSB1C3(control) | - |
Ligation
Sample | Vector/(µL) | Insert/(µL) | Ligase/(µl) | Buffer/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|
9/20 Q-pSB1C3(B) | 1 | 3 | 1 | 5 | 0 | 10 |
9/16 Q-pSB1C3(B) | 1 | 3 | 1 | 5 | 0 | 10 |
9/20 Q-pSB1C3(B)(control) | 1 | 0 | 1 | 5 | 3 | 10 |
9/16Q-pSB1C3(B)(control) | 1 | 0 | 1 | 5 | 3 | 10 |
Transformation
Sample | Plasmid/(µl) | CompetentCells(DH5α)/(µl) |
---|---|---|
E1 | 2 | 10 |
E2 | 2 | 10 |
E3 | 2 | 10 |
E4 | 2 | 10 |
10/5
Ethanol Precipitation
10/3 Gel Extraction PconpSB1C3(SP)
Ligation
sample | Vector/(µL) | Insert/(µL) | Toyobo Ligation high/(µl) |
---|---|---|---|
10/5 PconpSB1C3(SP)+9/20pQ(3)(XP) | 1 | 1 | 2 |
10/5 PconpSB1C3(SP)(control) | 1 | 1 | 2 |
Transformation
Sample | Plasmid/(µl) | CompetentCells(DH5α)/(µl) |
---|---|---|
F1 | 2 | 10 |
F2 | 2 | 10 |
Colony PCR
Lane | Colony PCR ProductsⅠ |
---|---|
9-14 | E1 1-6 |
15-20 | E2 1-6 |
Liquid Culture
Sample |
---|
E1 1-6 |
E2 1-6 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
pB PCR | 57 | 2.06 | 2.39 |
Digestion
Sample | DNA/(µl) | EcoRI/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/18 MP Bµ(pSB1C3)11-4(ES) | 10 | 1 | 0 | 1 | 0 | 4 | 0.4 | 23.6 | 40 |
9/18 MP Bµ(pSB1C3)11-4(control) | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 8 | 10 |
9/22 MP pQ-3(XP) | 40 | 0 | 4 | 0 | 4 | 16 | 1.6 | 94.4 | 160 |
9/22 MP pQ-3(control) | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 8 | 10 |
9/22 Pcon Master(SP) | 10 | 0 | 0 | 1 | 1 | 4 | 0.4 | 23.6 | 40 |
9/22 Pcon Master(control) | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 8 | 10 |
9/22 pB(PCR Product)(ES) | 20 | 1 | 0 | 1 | 0 | 4 | 0.4 | 13.6 | 40 |
9/22 pB(PCR Product)(control) | 1 | 0 | 0 | 0 | 10/td> | 1 | 0 | 8 | 10 |
PCR
Target | Volume |
---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 |
Fw Primer/(µl) | 0.75 |
Rv Primer/(µl) | 0.75 |
Template(9/22 Mini Pcon-mamQ-3) | pick up |
MilliQ/(µl) | 11 |
TOTAL/(µl) | 25 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 5min | 1time |
Denature | 98℃ | 20sec | 30cycle |
Annealing | 60℃ | 15sec | 30cycle |
Extension | 72℃ | 30sec | 30cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
10/6
Sequence PCR
Target | 10/6 T7-RBS-his(pSB1C3)-1-VF(Miniprep product) | 10/6 T7-RBS-his(pSB1C3)-1-VR(Miniprep product) | 10/6 T7-RBS-his(pSB1C3)-2-VF(Miniprep product) | 10/6 T7-RBS-his(pSB1C3)-2-VR(Miniprep product) | 10/6 T7-RBS-his(pSB1C3)-3-VF(Miniprep product) | 10/6 T7-RBS-his(pSB1C3)-3-VR(Miniprep product) | 10/6 Q(pSB1C3)E1-1 VF(Miniprep product) | 10/6 Q(pSB1C3)E1-1 VR(Miniprep product) | 10/6 M Q(pSB1C3)E1-2-VF | 10/6 Q(pSB1C3)E1-2-VR(Miniprep product) | 10/6 M Q(pSB1C3)E1-3-VF | 10/6 M Q(pSB1C3)E1-3-VR | 10/6 M Q(pSB1C3)E2-1-VF | 10/6 M Q(pSB1C3)E2-1-VR | 10/6 Q(pSB1C3)E2-2-VF(Miniprep product) | 10/6 Q(pSB1C3)E2-2-VR(Miniprep product) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Template/(µl) | 2.2 | 2.2 | 2.5 | 2.5 | 2.5 | 2.5 | 1.85 | 1.85 | 1.1 | 1.1 | 1.7 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
MilliQ/(µl) | 5.55 | 5.55 | 5.25 | 5.25 | 5.25 | 5.25 | 5.9 | 5.9 | 6.65 | 6.65 | 6.05 | 6.05 | 5.95 | 5.95 | 6.05 | 6.05 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 50℃ | 5sec | 30cycle |
Extension | 60℃ | 4min | 30cycle |
Final elongation | 4℃ | 1min | 1time |
Final hold | 4℃ | infinity | - |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
T7-RBS-his(pSB1C3)-1 | 180 | 1.84 | 1.76 |
T7-RBS-his(pSB1C3)-2 | 160 | 1.92 | 1.92 |
T7-RBS-his(pSB1C3)-3 | 156 | 1.69 | 1.64 |
E1-1 | 216 | 1.84 | 2.04 |
E1-2 | 355 | 1.82 | 2.31 |
E1-3 | 238 | 1.81 | 2.11 |
E2-1 | 225 | 1.83 | 2.00 |
E2-2 | 230 | 1.76 | 1.84 |
Gel Extraction
(1)
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | 10/5 Bµ(pSB1C3)(control) | - |
3 | 10/5 Bµ(pSB1C3)(ES) | - |
6 | 10/5 pB(ES) | - |
(2)
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | pQ-3(control) | - |
3 | pQ-3(XP) | - |
4 | Pcon(control) | - |
6 | Pcon(SP) | - |
10/8
Ligation
sample | Insert/(µL) | Vector/(µL) | 2x Ligation high/ (µl) | MilliQ | TOTAL |
---|---|---|---|---|---|
pQ pSB1C3 | 1 | 1 | 2 | 0 | 4 |
pQ pSB1C3(control) | 0 | 1 | 2 | 1 | 4 |
pB pSB1C3 | 1 | 1 | 2 | 0 | 4 |
pB pSB1C3(control) | 0 | 1 | 2 | 1 | 4 |
Liquid Culture
Sample |
---|
9/22 pLQB |
9/22 pLQ |
9/22 pL |
9/18 control(T7-RBS)(9/18) |
Inoculation
Sample |
---|
10/7 pLQB |
10/7 pLQ |
10/7 pL |
10/7 control |
16:30
Sample | Absorbance |
---|---|
BL21 | 0.224 |
LQB | 0.031 |
LQ | 0.061 |
17:30
Sample | Absorbance |
---|---|
BL21 | 0.720 |
LQB | 0.057 |
LQ | 0.139 |
18:00
Sample | Absorbance |
---|---|
LQ | 0.088 |
LQB | 0.211 |
18:30
Sample | Absorbance |
---|---|
LQ | 0.267 |
LQB | 0.122 |
19:30
Sample | Absorbance |
---|---|
LQB | 0.216 |
LQ | 0.412 |
10/9 13:30
Sample | Absorbance |
---|---|
LQB(morning) | 1.657 |
LQ | 1.625 |
LQB(evening) | 1.014 |
- | 0.064 |
LQ | 1.652 |
L | 2.117 |
control | 2.124 |
10/9
Colony PCR
Target | Volume |
---|---|
2x quick tag/(µl) | 15 |
VF Primer/(µl) | 0.6 |
VR Primer/(µl) | 0.6 |
MilliQ/(µl) | 13.8 |
TOTAL/(µl) | 30 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 94℃ | 2min | 1time |
Denature | 94℃ | 30sec | 30cycle |
Annealing | 55℃ | 30sec | 30cycle |
Extension | 68℃ | 1min | 30cycle |
Final elongation | 68℃ | 7min | 1time |
Final hold | 4℃ | infinity | - |
Transformation
Sample | Plasmid/(µl) | CompetentCells(DH5α)/(µl) | TOTAL/(µl) |
---|---|---|---|
pQ | 2 | 20 | 22 |
pB | 2 | 20 | 22 |
pQ(control) | 2 | 20 | 22 |
pB(control) | 2 | 20 | 22 |
Inoculation
Sample |
---|
10/8 pLQB |
10/8 pLQ |
10/8 pL |
10/8 control |
14:00
Sample | Absorbance |
---|---|
LQB | 0.177 |
LQ | 0.306 |
L | 0.477 |
control | 0.435 |
14:30
Sample | Absorbance |
---|---|
LQB | 0.240 |
LQ | 0.351 |
L | 0.641 |
control | 0.640 |
15:00
Sample | Absorbance |
---|---|
LQB | 0.351 |
LQ | 0.395 |
15:30
Sample | Absorbance |
---|---|
LQB | 0.413 |
LQ | 0.397 |
16:00
Sample | Absorbance |
---|---|
LQB | 0.564 |
LQ | 0.458 |
16:30
Sample | Absorbance |
---|---|
LQB | 0.732 |
LQ | 0.518 |
17:00
Sample | Absorbance |
---|---|
LQ | 0.581 |
17:30
Sample | Absorbance |
---|---|
LQ | 0.458 |
18:00
Sample | Absorbance |
---|---|
LQ | 0.749 |
10/10
Electrophoresis
Honda
Lane | PCR Product |
---|---|
1 | 1kb ladder |
2 | 10/9 pB(pSB1C3) Colony_1 |
3 | 10/9 Negative Control |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffur/(µl) | BSA/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/15 pLQ | 5 | 0.5 | 0 | 0 | 0.5 | 2(H) | 0.5 | 11.5 | 20 |
10/2 pLQB | 7 | 1 | 0 | 0 | 1 | 4(H) | 0.5 | 26.5 | 40 |
10/2 pLQB(Nega) | 1 | 0 | 0 | 0 | 0 | 1(H) | 0 | 8 | 10 |
9/2 pSB4A5 | 10 | 1 | 0 | 0 | 1 | 4(H) | 0.5 | 26.5 | 40 |
9/2 pSB4A5(Nega) | 1 | 0 | 0 | 0 | 0 | 1(H) | 0 | 8 | 10 |
20:00~ O/N
Liquid Culture
Name | medium |
---|---|
10/6 Transformation Pcon+mamB+pSB1C3 Colony_1 | LB medium(CP)*2 |
9/22 Master Plate Pcon+mamL+mamQ | LB medium(CP)*2 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
10/10 Liquid culture Pcon+mamB colony_1 | 74 | 1.70 | 3.82 |
10/10 Liquid culture Pcon+mamL+mamQ | 59 | 1.88 | 5.10 |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
2 | 10/10 Pcon+mamL+mamQ+mamB (Nega) | 5 |
4 | 10/10 Pcon+mamL+mamQ+mamB (E+P) | 35 |
7 | 10/10 Pcon+mamL+mamQ (E+P) | 20 |
10 | 10/10 pSB4A5 (Nega) | 5 |
12 | 10/10 pSB4A5 (E+P) | 35 |
14 | 1kb ladder | 3 |
10/13
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffur/(µl) | BSA/(µl) | MilliQ/(µl) | CIAP/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|---|
10/11 Miniprep Pcon+mamL+mamQ | 23 | 1 | 0 | 0 | 1 | 4(H) | 0.5 | 11.5 | 1 | 41 |
10/11 Miniprep Pcon+mamL+mamQ(Nega) | 1 | 0 | 0 | 0 | 0 | 1(H) | 0 | 8 | 0 | 10 |
11:00~ 2hours
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
10/13 Digestion Pcon+mamL+mamQ(E+P) | 59 | 1.79 | -0.66 |
Ligation
Insert/(µL) | Vector/(µL) | 2*Ligation high/(µl) | Total/(µl) | ||
---|---|---|---|---|---|
10/13 Pcon+mamL+mamQ (E+P) | 2 | 10/11 pSB4A5 (E+P)(2 fold dilution) | 2 | 4 | 8 |
10/11 Pcon+mamL+mamQ+mamB(E+P) | 2 | 10/11 pSB4A5 (E+P)(2 fold dilution) | 2 | 4 | 8 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
10/10 Ligation Pcon+mamL+mamQ+pSB4A5 | 6 | 30(2/23) | 36 | LB(CP) |
10/10 Ligation Pcon+mamL+mamQ+mamB+pSB4A5 | 6 | 30(2/23) | 36 | LB(CP) |
10/14
Liquid Culture
Name | medium |
---|---|
9/22 Master Plate Pcon+mamL+mamQ+mamB | LB medium(CP) |
9/22 Master Plate Pcon+mamL+mamQ | LB medium(CP) |
9/22 Master Plate Pcon+mamL | LB medium(CP) |
10/6 Transformation Pcon+ mamB | LB medium(CP) |
10/9 Transformation Pcon+ mamB | LB medium(CP) |
10/4 Transformation mamQ+pSB1C3 (E1-3) | LB medium(CP) |
9/18 Master Plate T7+RBS+pSB1C3 | LB medium(CP) |
10/13 Master Plate Pcon+mamL+mamQ+pSB4A5 | LB medium(Amp) |
10/15
Inoculation
10:45~
Sample |
---|
10/14 pLQB |
10/14 pLQ |
10/14 pL |
10/14 T7-RBS |
10/14 pLQ(4A5) |
12:30
Sample | Absorbance |
---|---|
LQB | 0.096 |
LQ | 0.087 |
L | 0.278 |
T7-RBS | 0.253 |
13:05
Sample | Absorbance |
---|---|
LQB | 0.153 |
LQ | 0.139 |
L | 0.448 |
T7-RBS | 0.389 |
pLQ(4A5) | 0.277 |
13:46
Sample | Absorbance |
---|---|
LQB | 0.275 |
LQ | 0.204 |
L | 0.597 |
T7-RBS | 0.516 |
pLQ(4A5) | 0.443 |
14:26
Sample | Absorbance |
---|---|
LQB | 0.293 |
LQ | 0.275 |
L | 0.896 |
T7-RBS | 0.595 |
pLQ(4A5) | 0.641 |
14:55
Sample | Absorbance |
---|---|
LQB | 0.435 |
LQ | 0.434 |
L | 0.914 |
T7-RBS | 0.837 |
pLQ(4A5) | 0.863 |
15:43
Sample | Absorbance |
---|---|
LQB | 0.871 |
LQ | 0.826 |
L | 1.735 |
T7-RBS | 1.692 |
pLQ(4A5) | 1.458 |
16:33
Sample | Absorbance |
---|---|
LQB | 1.112 |
LQ | 1.046 |
L | 0.747 |
T7-RBS | 1.819 |
pLQ(4A5) | 1.642 |
17:15
Sample | Absorbance |
---|---|
LQB | 1.725 |
LQ | 1.613 |
L | 2.188 |
T7-RBS | 2.123 |
pLQ(4A5) | 2.007 |
18:20
Sample | Absorbance |
---|---|
LQB | 1.833 |
LQ | 1.712 |
L | 2.194 |
T7-RBS | 2.205 |
pLQ(4A5) | 2.127 |
18:45
Sample | Absorbance |
---|---|
LQB | 1.928 |
LQ | 1.808 |
L | 2.224 |
T7-RBS | 2.233 |
pLQ(4A5) | 2.148 |
Colony PCR
NameⅠ | NameⅡ |
---|---|
10/6 Pcon+mamB+pSB1C3 colony_1 | 10/13 Pcon+mamL+mamQ+pSB4A5 colony_1(seq-2+VR) |
10/9 Pcon+mamB+pSB1C3 colony_1 | 10/13 Pcon+mamL+mamQ+pSB4A5 colony_2(seq-2+VR) |
10/13 Pcon+mamL+mamQ+pSB4A5 colony_1 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1(seq-2+VR) |
10/13 Pcon+mamL+mamQ+pSB4A5 colony_2 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2(seq-2+VR) |
10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3(seq-2+VR) |
10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4(seq-2+VR) |
10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3 | - |
10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4 | - |
10/16
Electrophoresis
Lane | Colony PCR Products |
---|---|
6 | 1kbp ladder |
7 | 10/6 Pcon+mamB+pSB1C3 colony_1 |
8 | 10/6 Pcon+mamB+pSB1C3 colony_2 |
9 | 10/13 Pcon+mamL+mamQ+pSB4A5 colony_1 |
10 | 10/13 Pcon+mamL+mamQ+pSB4A5 colony_2 |
11 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1 |
12 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2 |
13 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3 |
14 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4 |
15 | 10/13 Pcon+mamL+mamQ+pSB4A5 colony_1(seq-2+VR) |
16 | 10/13 Pcon+mamL+mamQ+pSB4A5 colony_2(seq-2+VR) |
17 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_1(seq-2+VR) |
18 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_2(seq-2+VR) |
19 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_3(seq-2+VR) |
20 | 10/13 Pcon+mamL+mamQ+mamB+pSB4A5 colony_4(seq-2+VR) |
Inoculation
15:15~
Sample |
---|
10/15 RFP-his |
17:15
Sample | Absorbance |
---|---|
RFP-his | 0.354 |
18:50
Sample | Absorbance |
---|---|
RFP-his | 0.908 |
19:20
Sample | Absorbance |
---|---|
RFP-his | 0.992 |
10/17
Western Blotting
Make the 20% acrilamid gel apray the following
Lane | Sample | Volume/(µl) |
---|---|---|
2 | Sample buffer | 5 |
3 | protein marker | 5 |
4 | 10/14 Pcon+mamL+mamQ+mamB+pSB1C3 | 5 |
5 | 10/14 Pcon+mamL+mamQ+pSB1C3 | 5 |
6 | 10/14 Pcon+mamB+pSB1C3 | 5 |
7 | 10/14 Pcon+mamL+pSB1C3 | 5 |
9 | 10/14 T7+RBS+pSB1C3(Nega) | 5 |
10 | GFP-his(protein)(10 fold dilution) | 5 |
11 | GFP-his(protein)(10 fold dilution)(37°C denature for 10 min.) | 5 |
Electrophoresis:200V 25mA 90min
Transcription:50V 200mA 73min