Team:TU Delft-Leiden/Modeling/CodeRepository

From 2014.igem.org

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<h3>Landmine Module</h3>  
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<h3>Curli Module</h3>
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<p><a href="https://static.igem.org/mediawiki/2014/b/be/TUDelft_2014_Curli_Server_celllevel.m">The curli gene and cell level code.</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/5/51/Delft2014_StandardActivation.m">Standard Activation</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/9/90/TUDelft_2014_Colony_ComputePersistenceLength.m">Find the persistence length of a curli.</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/8/84/Delft2014_CooperativeActivation.m">Cooperative Activation</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/b/b3/TUDelft_2014_Curli_Colony_FitDensity.m">Fit the density from the cell to the colony level.</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/f/f8/Delft2014_PromoterModel.m">Promoter Model Fitter</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/d/dd/TUDelft_2014_Curli_colonylevel_Light.m">Calculate if there is percolation as function of time.</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/2/2c/TUDelft_2014_Colony_Calculate_Resistance.m">Simulate an experiment on the colony level.</a></p>
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<h3>EET Module</h3>
<h3>EET Module</h3>
<h4>Flux Balance Analysis </h4>
<h4>Flux Balance Analysis </h4>
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<p><a href="https://2014.igem.org/File:FBA_constructed_model.zip">FBA Constructed Model</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/0/0a/TU_Delft_2014_FBA_constructed_model.zip">FBA Constructed Model</a></p>
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<p><a href="https://2014.igem.org/File:Comp_with_without_EET.m">Comparison with and without EET</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/f/ff/TU_Delft_2014_Comp_with_without_EET.m">Comparison with and without EET</a></p>
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<p><a href="https://2014.igem.org/File:FBA.m">FBA</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/0/04/TU_Delft_2014_FBA.m">FBA</a></p>
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<p><a href="https://2014.igem.org/File:FBA_Uptake_without_EET.m">FBA Uptake without EET</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/1/11/TU_Delft_2014_FBA_Uptake_without_EET.m">FBA Uptake without EET</a></p>
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<p><a href="https://2014.igem.org/File:Robustness_Analysis_EET.m">Robustness Analysis EET</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/b/b9/TU_Delft_2014_Robustness_Analysis_EET.m">Robustness Analysis EET</a></p>
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<p><a href="https://2014.igem.org/File:Robustness_Analysis_Uptake.m">Robustness Analysis Uptake</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/5/5e/TU_Delft_2014_Robustness_Analysis_Uptake.m">Robustness Analysis Uptake</a></p>
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<p><a href="https://2014.igem.org/File:FVA.m">FVA</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/6/62/TU_Delft_2014_FVA.m">FVA</a></p>
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<p><a href="https://2014.igem.org/File:Phase_Plane_Analysis.m">Phase Plane Analysis FBA</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/1/1f/TU_Delft_2014_Phase_Plane_Analysis.m">Phase Plane Analysis FBA</a></p>
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<p><a href="https://2014.igem.org/File:Phase_Plane_Analysis_Min_Max.m">Phase Plane Analysis FVA</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/d/db/TU_Delft_2014_Phase_Plane_Analysis_Min_Max.m">Phase Plane Analysis FVA</a></p>
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<h4>EET Complex Assembly </h4>
<h4>EET Complex Assembly </h4>
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<p><a href="https://static.igem.org/mediawiki/2014/6/60/Delft2014_EETpathway_assembly.m">EET Pathway Assembly</a></p>
<p><a href="https://static.igem.org/mediawiki/2014/6/60/Delft2014_EETpathway_assembly.m">EET Pathway Assembly</a></p>
<p><a href="https://static.igem.org/mediawiki/2014/6/6b/Delft2014_EETPathway_assembly_solver.m">EET Pathway Assembly Solver</a></p>
<p><a href="https://static.igem.org/mediawiki/2014/6/6b/Delft2014_EETPathway_assembly_solver.m">EET Pathway Assembly Solver</a></p>
<p><a href="https://static.igem.org/mediawiki/2014/b/ba/Delft2014_EETpathway_assembly_simple.m">EET Pathway Assembly (Simple)</a></p>
<p><a href="https://static.igem.org/mediawiki/2014/b/ba/Delft2014_EETpathway_assembly_simple.m">EET Pathway Assembly (Simple)</a></p>
<p><a href="https://static.igem.org/mediawiki/2014/8/84/Delft2014_EETpathway_assembly_simple_solver.m">EET Pathway Assembly Solver (Simple)</a></p>
<p><a href="https://static.igem.org/mediawiki/2014/8/84/Delft2014_EETpathway_assembly_simple_solver.m">EET Pathway Assembly Solver (Simple)</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/7/7e/Delft2014_EETvsdALA.m.m">EET Pathway Assembly Solver (Simple) for varying d-ALA concentration</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/7/7e/Delft2014_EETvsdALA.m">EET Pathway Assembly Solver (Simple) for varying d-ALA concentration</a></p>
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<h3>Curli Module</h3>
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<h3>Landmine Module</h3>  
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<p><a href="https://static.igem.org/mediawiki/2014/5/51/Delft2014_StandardActivation.m">Standard Activation</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/8/84/Delft2014_CooperativeActivation.m">Cooperative Activation</a></p>
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<p><a href="https://static.igem.org/mediawiki/2014/f/f8/Delft2014_PromoterModel.m">Promoter Model Fitter</a></p>
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Latest revision as of 00:12, 18 October 2014


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