Team:KAIT Japan/Notebook
From 2014.igem.org
(Difference between revisions)
Minamiuuhu (Talk | contribs) |
|||
(32 intermediate revisions not shown) | |||
Line 54: | Line 54: | ||
<br> | <br> | ||
__NOTOC__ | __NOTOC__ | ||
- | = | + | =<font size ="7">Notebook</font>= |
- | + | ||
- | + | ||
- | + | ||
<br> | <br> | ||
<br> | <br> | ||
- | =='''<font size="6">Creating parts of | + | =='''<font size="6">Creating parts of GFP and HlyA</font>'''== |
:<big>'''Date:8/22'''</big> The refinement of DNA and PCR and Electrophoresis | :<big>'''Date:8/22'''</big> The refinement of DNA and PCR and Electrophoresis | ||
:<big>'''Date:8/25'''</big> PCR and Electrophoresis and Restriction | :<big>'''Date:8/25'''</big> PCR and Electrophoresis and Restriction | ||
Line 67: | Line 64: | ||
:<big>'''Date:8/26'''</big> Blue white Selection and Electrophoresis(8/25 Restriction) and DNA Extraction | :<big>'''Date:8/26'''</big> Blue white Selection and Electrophoresis(8/25 Restriction) and DNA Extraction | ||
:<big>'''Date:8/27'''</big> Electrophoresed the DNA that We did refinement on August 26 to confirmed it | :<big>'''Date:8/27'''</big> Electrophoresed the DNA that We did refinement on August 26 to confirmed it | ||
- | :<big>'''Date: | + | :<big>'''Date:8/28'''</big> Check the HlyA and GFP for colony PCR |
- | + | :<big>'''Date:8/29'''</big> DNA purify the HlyA and GFP | |
- | + | :<big>'''Date:8/29'''</big> Ligation product and check for PCR | |
- | + | :<big>'''Date:9/1'''</big> Build replica the HlyA and GFP | |
+ | :<big>'''Date:9/1'''</big> Restriction enzyme treatment the HlyA and GFP | ||
+ | :<big>'''Date:9/2'''</big> Restriction enzyme treatment the HlyA and GFP in 9/1 was NANOSEP | ||
+ | :<big>'''Date:9/3'''</big> Ligation and PCR, DNA purification the HlyA and GFP | ||
+ | :<big>'''Date:9/4'''</big> Restriction enzyme treatment the HlyA and GFP | ||
+ | :<big>'''Date:9/5'''</big> Restriction enzyme treatment the vector | ||
+ | :<big>'''Date:9/5'''</big> Ligation the vector and insert. So transformation. | ||
+ | :<big>'''Date:9/9'''</big> Check the HiyA and GFP replica.Ligation and transformation the vector and insert DNA. | ||
+ | :<big>'''Date:9/10'''</big> Transformation in 9/9 check the colony PCR.TA cloning the HlyA+GFP. | ||
+ | :<big>'''Date:9/11'''</big> Ligation the vector and insert DNA. | ||
+ | :<big>'''Date:9/12~9/15'''</big> Transformation the Ligation product. | ||
+ | :<big>'''Date:9/16'''</big> Noticed wrong the primer.so restart from the First. | ||
+ | :<big>'''Date:9/17'''</big> PCR the DNA abstracted for iGEM kit.It was TA cloning and restriction enzyme treatment. | ||
+ | :<big>'''Date:9/18'''</big> Ligation the GFP and HlyA. | ||
+ | :<big>'''Date:9/19'''</big> Electrophoresis the ligation the GFP+HlyA in 9/18 | ||
+ | :<big>'''Date:9/20'''</big> DNA purify and PCR | ||
+ | :<big>'''Date:9/21'''</big> PCR and DNA purify | ||
+ | :<big>'''Date:9/22'''</big> Ligation the GFP+HlyA | ||
+ | :<big>'''Date:9/23'''</big> PCR and DNA purify | ||
+ | :<big>'''Date:9/24'''</big> TA Cloning was GFP and HlyA | ||
+ | :<big>'''Date:9/26'''</big> Restriction enzyme treatment the ligation the GFP+HlyA in 9/22 | ||
+ | :<big>'''Date:9/27'''</big> Check the TA cloning of GFP+HlyA | ||
+ | :<big>'''Date:9/29'''</big> Restriction enzyme treatment the GFP+HlyA and the pSBIC3 | ||
+ | :<big>'''Date:9/29'''</big> The vector and the insert were NANOSEP and lectrophoresis | ||
+ | :<big>'''Date:9/30'''</big> The vector and the insert were ligation and transformation | ||
+ | :<big>'''Date:9/30'''</big> The GFP+HlyA was PCR and DNA purify | ||
+ | :<big>'''Date:10/1'''</big> Electrophoresis the GFP+HlyA was PCR and DNA purify in 9/30 | ||
+ | :<big>'''Date:10/2'''</big> Restriction enzyme treatment and ligation the GFP+HlyA | ||
+ | :<big>'''Date:10/3'''</big> Check the ligation in 10/2 | ||
+ | :<big>'''Date:10/3'''</big> Transformation the plasmid | ||
+ | :<big>'''Date:10/5'''</big> Colony PCR | ||
+ | :<big>'''Date:10/6'''</big> Miniprep and Electrophoresis | ||
Line 81: | Line 109: | ||
:<big>'''Date:8/25'''</big> PCR and Electrophoresis(Changed to Taq HOTSTER from EX taq.) | :<big>'''Date:8/25'''</big> PCR and Electrophoresis(Changed to Taq HOTSTER from EX taq.) | ||
:<big>'''Date:8/26'''</big> PCR and Electrophoresis(Using a mutation primer.) | :<big>'''Date:8/26'''</big> PCR and Electrophoresis(Using a mutation primer.) | ||
- | :<big>'''Date:8/27'''</big> First Variation introduction (with Prime STAR Max) | + | :<big>'''Date:8/27'''</big> First Variation introduction (with Prime STAR Max) |
- | :<big>'''Date:9/ | + | :<big>'''Date:9/2'''</big> PCR and Electrophoresis |
- | :<big>'''Date:9/ | + | :<big>'''Date:9/5~9/8'''</big> PCR and Electrophoresis |
- | + | ||
:<big>'''Date:9/9'''</big> Sequence(to To confirm whether variation happened in DNA of STAT3 ) | :<big>'''Date:9/9'''</big> Sequence(to To confirm whether variation happened in DNA of STAT3 ) | ||
- | :<big>'''Date:9/10~9/12'''</big> PCR and Electrophoresis | + | :<big>'''Date:9/10~9/12'''</big> PCR and Electrophoresis |
+ | :<big>'''Date:9/13~9/15'''</big> DNA purification and electrophoresis | ||
+ | :<big>'''Date:9/16~9/17'''</big> DNA purification and colony PCR(Failure) | ||
+ | :<big>'''Date:9/18'''</big> colony PCR(Failure) | ||
+ | :<big>'''Date:9/19~9/22'''</big> colony PCR and electrophoresis | ||
+ | :<big>'''Date:9/23'''</big> PCR and Electrophoresis(We found out that DNA polymerase was malfunction) | ||
+ | :<big>'''Date:9/24'''</big> PCR and Electrophoresis and DNA DNA purification | ||
+ | :<big>'''Date:9/25'''</big> PCR(to find annealing temperature) | ||
+ | :<big>'''Date:9/26~9/30'''</big> DNA purification and electrophoresis(to use DNA for the sequence) | ||
+ | :<big>'''Date:10/1'''</big> Dilution after Concentration measurement of DNA | ||
+ | :<big>'''Date:10/2'''</big> Sequence(to check mutation of DNA)/The variation was not found. | ||
+ | :<big>'''Date:10/4'''</big> PCR and electrophoresis | ||
+ | :<big>'''Date:10/5~10/7'''</big> Colony PCR and DNA purification | ||
+ | :<big>'''Date:10/8'''</big> Concentration measurement of DNA | ||
+ | :<big>'''Date:10/9'''</big> Sequence(to check mutation of DNA)/The variation was not found | ||
+ | |||
+ | |||
+ | |||
<br> | <br> | ||
<br> | <br> | ||
=='''<font size="6">Creating parts of IL-10α,IL-10β</font>'''== | =='''<font size="6">Creating parts of IL-10α,IL-10β</font>'''== | ||
- | 19'''</big> PCR(8/18 Miniprep) and Electrophoresis | + | :<big>'''Date:8/19'''</big> PCR(8/18 Miniprep) and Electrophoresis |
- | :<big>'''Date:8/20~8/22 | + | :<big>'''Date:8/20~8/22'''</big> PCR(Lowered 2℃ from Tm value.) and Electrophoresis |
:<big>'''Date:8/25'''</big> PCR and Electrophoresis(Changed to Taq HOTSTER from EX taq.) | :<big>'''Date:8/25'''</big> PCR and Electrophoresis(Changed to Taq HOTSTER from EX taq.) | ||
:<big>'''Date:8/26'''</big> PCR and Electrophoresis(Using a mutation primer.) | :<big>'''Date:8/26'''</big> PCR and Electrophoresis(Using a mutation primer.) | ||
:<big>'''Date:8/27'''</big> First Variation introduction (with Prime STAR Max) | :<big>'''Date:8/27'''</big> First Variation introduction (with Prime STAR Max) | ||
- | :<big>'''Date:9/ | + | :<big>'''Date:9/2'''</big> PCR |
- | :<big>'''Date:9/ | + | :<big>'''Date:9/4'''</big> Transformation |
- | :<big>'''Date:9/ | + | :<big>'''Date:9/5'''</big> Colony PCR |
- | :<big>'''Date:9/9'''</big> Sequence(to To confirm whether variation happened in DNA of IL- | + | :<big>'''Date:9/7'''</big> ColonyPCR |
- | :<big>'''Date:9/10~9/ | + | :<big>'''Date:9/8'''</big> DNA extraction and Sequence(to To confirm whether variation happened in DNA of IL-10β) |
- | :<big>'''Date:9/10 | + | :<big>'''Date:9/9'''</big> DNA sequence |
+ | :<big>'''Date:9/10'''</big> PCR and Electtrophoresis | ||
+ | :<big>'''Date:9/11'''</big> Colony PCR | ||
+ | :<big>'''Date:9/12'''</big> DNA extraction | ||
+ | :<big>'''Date:9/13'''</big> PCR and Electrophoresis | ||
+ | :<big>'''Date:9/15'''</big> ultrafiltration | ||
+ | :<big>'''Date:9/16'''</big> DNA sequence(to comfirm whether variation happened in DNA of IL-10β) | ||
+ | :<big>'''Date:9/20'''</big> PCR | ||
+ | :<big>'''Date:9/23'''</big> Colony PCR | ||
+ | :<big>'''Date:9/24'''</big> Electrophoresis | ||
+ | :<big>'''Date:9/26'''</big> ultrafiltration | ||
+ | :<big>'''Date:9/27'''</big> PCR and colony PCR | ||
+ | :<big>'''Date:9/29'''</big> Electrophoresis | ||
+ | :<big>'''Date:9/30'''</big> DNA Extraction | ||
+ | :<big>'''Date:10/1'''</big> Colony PCR and DNA extraction | ||
+ | :<big>'''Date:10/2'''</big> Electrophoresis | ||
+ | :<big>'''Date:10/3'''</big> PCR(using Prime Star MAX Premix) and Electrophoresis | ||
+ | :<big>'''Date:10/4'''</big> PCR(using Prime Star MAX Premix) and Electrophoresis | ||
+ | :<big>'''Date:10/5'''</big> Electrophoresis | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | =='''<font size="6">Creating parts of HRV,IL-5Ra,IL-5Rb,AraC,Arac Promoter</font>'''== | ||
+ | :<big>'''Date:9/16'''</big> PCR:Ara,AraPro,HRV Transformation:IL-5Ra,IL-5Rb | ||
+ | :<big>'''Date:9/17'''</big> Restriction enzyme treatment and insert to TA vector and transformation | ||
+ | :<big>'''Date:9/18'''</big> transformation | ||
+ | :<big>'''Date:9/19'''</big> miniprep and colony PCR | ||
+ | :<big>'''Date:9/20~9/22'''</big> PCR | ||
+ | :<big>'''Date:9/23'''</big> TA Cloning | ||
+ | :<big>'''Date:9/24'''</big> TA Cloning and PCR | ||
+ | :<big>'''Date:9/25'''</big> Restriction enzyme treatment and PCR | ||
+ | :<big>'''Date:9/26'''</big> Colony PCR and Ligation | ||
+ | :<big>'''Date:9/27'''</big> TA Cloning and Ligation and colony PCR | ||
+ | :<big>'''Date:9/28'''</big> PCR | ||
+ | :<big>'''Date:9/29'''</big> colony PCR and PCR and DNA refinement and Ligation | ||
+ | :<big>'''Date:9/30'''</big> DNA refinement and Ligation | ||
+ | :<big>'''Date:10/1'''</big> Restriction enzyme treatment and Ligation | ||
+ | :<big>'''Date:10/2'''</big> PCR and Ligation and DNA refinement | ||
+ | :<big>'''Date:10/3'''</big> Ligation | ||
+ | :<big>'''Date:10/4'''</big> Ligation | ||
+ | :<big>'''Date:10/7'''</big> PCR | ||
+ | :<big>'''Date:10/8'''</big> PCR and Restriction enzyme | ||
+ | :<big>'''Date:10/9'''</big> DNA refinement and Restriction enzyme | ||
+ | :<big>'''Date:10/10'''</big> Phoshatase treatment | ||
+ | :<big>'''Date:10/11'''</big> DNA refinement and Ligation and Restriction enzyme treatment | ||
+ | :<big>'''Date:10/12'''</big> DNA refinement and PCR and Ligation and phoshatase treatment | ||
+ | |||
+ | |||
+ | |||
+ | |||
|} | |} |
Latest revision as of 09:44, 17 October 2014
|
|
|
|
|
|
|
|
|
Notebook
Creating parts of GFP and HlyA
Creating parts of STAT3
Creating parts of IL-10α,IL-10β
Creating parts of HRV,IL-5Ra,IL-5Rb,AraC,Arac Promoter
|